Wall clock time and date at job start Tue Mar 31 2020 06:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99631 * 2 1 4 4 H 1.48504 * 109.47204 * 239.99771 * 3 2 1 5 5 H 1.48501 * 109.47522 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46943 * 119.99777 * 3 2 1 7 7 C 1.38945 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00167 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.34767 * 120.00062 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99914 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00092 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46983 * 179.97438 * 12 10 9 14 14 C 1.46900 * 110.99792 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.47237 * 324.99400 * 14 13 12 16 16 C 1.50699 * 109.47538 * 85.00065 * 14 13 12 17 17 C 1.38237 * 120.00160 * 39.72135 * 16 14 13 18 18 C 1.38230 * 119.99946 * 179.79184 * 17 16 14 19 19 C 1.38231 * 120.00348 * 0.46368 * 18 17 16 20 20 C 1.38240 * 119.99711 * 359.77277 * 19 18 17 21 21 C 1.38234 * 120.00050 * 0.02562 * 20 19 18 22 22 C 1.50697 * 109.47022 * 205.00151 * 14 13 12 23 23 C 1.36130 * 120.17534 * 339.99393 * 22 14 13 24 24 C 1.39329 * 120.99258 * 179.97438 * 23 22 14 25 25 C 1.36125 * 120.98923 * 359.97438 * 24 23 22 26 26 C 1.40501 * 119.65263 * 0.02562 * 25 24 23 27 27 C 1.40557 * 121.28769 * 179.97438 * 26 25 24 28 28 C 1.36081 * 119.65010 * 180.02562 * 27 26 25 29 29 C 1.39383 * 120.99897 * 0.02562 * 28 27 26 30 30 C 1.36094 * 120.98995 * 359.95151 * 29 28 27 31 31 C 1.40507 * 120.17539 * 159.97725 * 22 14 13 32 32 H 0.97001 * 120.00022 * 0.02562 * 1 2 3 33 33 H 0.97005 * 119.99489 * 359.97438 * 9 7 2 34 34 H 1.09001 * 109.46892 * 60.00105 * 12 10 9 35 35 H 1.08995 * 109.47102 * 300.00168 * 12 10 9 36 36 H 1.00897 * 111.00635 * 56.04811 * 13 12 10 37 37 H 1.08005 * 119.99333 * 0.02562 * 17 16 14 38 38 H 1.08003 * 119.99727 * 180.25929 * 18 17 16 39 39 H 1.08001 * 120.00354 * 179.78625 * 19 18 17 40 40 H 1.07999 * 120.00034 * 179.97438 * 20 19 18 41 41 H 1.08003 * 119.99868 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.50276 * 0.02562 * 23 22 14 43 43 H 1.07999 * 119.50947 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.17668 * 179.72489 * 25 24 23 45 45 H 1.07995 * 120.17070 * 0.02562 * 27 26 25 46 46 H 1.08000 * 119.50492 * 180.02562 * 28 27 26 47 47 H 1.08004 * 119.50833 * 179.97438 * 29 28 27 48 48 H 1.08000 * 120.16912 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6965 1.2126 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5577 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9794 -0.0005 14 6 1.4983 -7.2707 -0.0017 15 1 0.5849 -7.1894 0.5875 16 6 1.1504 -7.6524 -1.4175 17 6 2.0513 -7.4145 -2.4387 18 6 1.7339 -7.7685 -3.7367 19 6 0.5119 -8.3516 -4.0150 20 6 -0.3910 -8.5849 -2.9945 21 6 -0.0719 -8.2348 -1.6959 22 6 2.3906 -8.3265 0.5983 23 6 3.7361 -8.1296 0.6624 24 6 4.5768 -9.0940 1.2141 25 6 4.0772 -10.2611 1.7054 26 6 2.6935 -10.5001 1.6566 27 6 2.1409 -11.6931 2.1535 28 6 0.7959 -11.8901 2.0888 29 6 -0.0451 -10.9258 1.5360 30 6 0.4542 -9.7586 1.0456 31 6 1.8382 -9.5193 1.0948 32 1 -0.4850 0.8400 -0.0004 33 1 0.3534 -2.3906 0.0005 34 1 0.6176 -4.9205 -0.8903 35 1 0.6169 -4.9209 0.8896 36 1 2.8334 -5.9127 0.7808 37 1 3.0046 -6.9556 -2.2217 38 1 2.4395 -7.5865 -4.5339 39 1 0.2625 -8.6250 -5.0296 40 1 -1.3459 -9.0401 -3.2120 41 1 -0.7775 -8.4167 -0.8987 42 1 4.1580 -7.2117 0.2807 43 1 5.6407 -8.9127 1.2532 44 1 4.7414 -11.0015 2.1262 45 1 2.7802 -12.4494 2.5842 46 1 0.3737 -12.8075 2.4717 47 1 -1.1090 -11.1074 1.4966 48 1 -0.2096 -9.0204 0.6205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096455515.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:43 Heat of formation + Delta-G solvation = 42.447371 kcal Electronic energy + Delta-G solvation = -31046.992570 eV Core-core repulsion = 27031.350563 eV Total energy + Delta-G solvation = -4015.642007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.158 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.87177 -39.19198 -38.19615 -36.94697 -35.62545 -33.93218 -32.78761 -31.24507 -30.99575 -30.76579 -30.32935 -29.47380 -27.02362 -25.17845 -23.87950 -23.45825 -22.75534 -22.39664 -21.86007 -20.04934 -19.27173 -17.92901 -17.60803 -17.22160 -16.69170 -16.58869 -15.83419 -15.57725 -15.12834 -14.95185 -14.57052 -14.41366 -14.24280 -14.03181 -13.87233 -13.69145 -13.62648 -13.27736 -13.17126 -13.00180 -12.91184 -12.61273 -12.34099 -12.18327 -11.90897 -11.57163 -11.51157 -11.41555 -11.06063 -11.05011 -10.97590 -10.95967 -10.66388 -10.43995 -10.20981 -9.93310 -9.49378 -8.78900 -8.69938 -8.63395 -8.47896 -8.15568 -7.95756 -7.93629 -6.40918 -3.81818 0.40603 0.93102 1.43855 1.55255 1.94931 2.90905 3.20507 3.26193 3.30460 3.87294 3.91160 3.99570 4.01833 4.25399 4.48061 4.70963 4.75321 4.77266 4.84673 4.91687 5.01565 5.06894 5.11060 5.13269 5.21109 5.25269 5.29532 5.31029 5.40896 5.47804 5.58989 5.64507 5.75575 5.81087 5.84445 5.98924 6.00319 6.04691 6.10669 6.17693 6.19254 6.25685 6.32379 6.44887 6.53184 6.56092 6.64996 6.70710 6.73992 6.91838 7.11712 7.19822 7.55603 7.58264 8.06491 8.61605 9.18230 9.54876 10.05989 10.76752 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.011146 B = 0.002572 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.619676 B =10885.739506 C =11906.436080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.658 5.658 14 C 0.165 3.835 15 H 0.062 0.938 16 C -0.067 4.067 17 C -0.077 4.077 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.119 4.119 22 C -0.069 4.069 23 C -0.102 4.102 24 C -0.108 4.108 25 C -0.114 4.114 26 C -0.052 4.052 27 C -0.107 4.107 28 C -0.120 4.120 29 C -0.120 4.120 30 C -0.107 4.107 31 C -0.039 4.039 32 H 0.272 0.728 33 H 0.392 0.608 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.355 0.645 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.141 0.859 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 -24.298 0.489 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.228 3.772 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.292 5.292 14 C 0.055 3.945 15 H 0.079 0.921 16 C -0.068 4.068 17 C -0.095 4.095 18 C -0.144 4.144 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.137 4.137 22 C -0.069 4.069 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.131 4.131 26 C -0.052 4.052 27 C -0.125 4.125 28 C -0.138 4.138 29 C -0.138 4.138 30 C -0.124 4.124 31 C -0.040 4.040 32 H 0.082 0.918 33 H 0.225 0.775 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.177 0.823 37 H 0.151 0.849 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.159 0.841 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.133 -24.086 -0.172 24.086 hybrid contribution -0.662 0.822 0.827 1.341 sum -0.795 -23.263 0.655 23.286 Atomic orbital electron populations 1.69605 1.05936 1.28258 1.50506 1.25257 0.95626 0.99711 0.97314 0.85926 0.78771 0.80493 0.79072 1.19880 1.20985 1.19915 1.19645 0.93324 0.82218 1.47698 0.87969 1.41846 1.09208 1.04582 1.64280 1.19724 0.88338 0.84611 0.84488 1.90515 1.13679 1.87058 1.55533 1.21721 0.94340 0.90781 1.01347 1.60172 1.18711 0.98943 1.51412 1.19228 0.94879 0.88102 0.92266 0.92077 1.19619 0.94101 0.98701 0.94338 1.21086 1.00066 0.96667 0.91695 1.21194 0.96977 0.99340 0.96897 1.21106 0.94382 0.99792 0.98866 1.20990 0.99405 1.01108 0.92869 1.21011 0.96230 0.99755 0.96691 1.19606 0.94455 0.94399 0.98450 1.20956 0.92829 1.00078 0.98147 1.20903 1.00116 0.93727 0.97901 1.21009 0.93776 0.97867 1.00495 1.18044 0.93510 0.94358 0.99279 1.20993 0.95467 0.96296 0.99775 1.20816 0.93740 0.99288 0.99941 1.20829 0.99868 0.94147 0.98960 1.21231 0.94221 0.97850 0.99120 1.17857 0.93431 0.93832 0.98845 0.91821 0.77463 0.89478 0.93696 0.82339 0.84933 0.86305 0.86570 0.86455 0.86534 0.84095 0.85752 0.85782 0.85795 0.86221 0.86131 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 10 C 0.44 10.38 7.82 -10.99 -0.09 10.30 16 11 O -0.58 -15.54 15.78 5.55 0.09 -15.45 16 12 C 0.05 0.90 5.96 -4.98 -0.03 0.87 16 13 N -0.66 -10.46 4.45 -110.46 -0.49 -10.95 16 14 C 0.17 2.21 1.89 -70.02 -0.13 2.08 16 15 H 0.06 0.78 6.51 -51.93 -0.34 0.45 16 16 C -0.07 -0.90 4.61 -104.62 -0.48 -1.38 16 17 C -0.08 -1.09 9.32 -39.58 -0.37 -1.46 16 18 C -0.13 -1.60 10.05 -39.59 -0.40 -2.00 16 19 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 20 C -0.13 -1.42 10.05 -39.58 -0.40 -1.81 16 21 C -0.12 -1.42 8.78 -39.58 -0.35 -1.77 16 22 C -0.07 -0.89 4.98 -104.53 -0.52 -1.41 16 23 C -0.10 -1.29 8.81 -39.93 -0.35 -1.64 16 24 C -0.11 -1.19 9.95 -39.94 -0.40 -1.58 16 25 C -0.11 -1.18 9.77 -39.49 -0.39 -1.57 16 26 C -0.05 -0.60 5.74 -106.83 -0.61 -1.21 16 27 C -0.11 -1.03 9.77 -39.48 -0.39 -1.41 16 28 C -0.12 -1.07 9.95 -39.93 -0.40 -1.47 16 29 C -0.12 -1.13 9.95 -39.93 -0.40 -1.53 16 30 C -0.11 -1.17 8.79 -39.48 -0.35 -1.52 16 31 C -0.04 -0.49 5.74 -106.83 -0.61 -1.10 16 32 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 34 H 0.09 1.50 8.00 -51.93 -0.42 1.09 16 35 H 0.05 0.73 8.06 -51.93 -0.42 0.31 16 36 H 0.35 5.81 6.67 -39.29 -0.26 5.55 16 37 H 0.13 2.00 7.71 -52.48 -0.40 1.59 16 38 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.17 6.01 -52.48 -0.32 0.86 16 42 H 0.14 1.87 6.63 -52.49 -0.35 1.52 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 48 H 0.13 1.29 3.97 -52.49 -0.21 1.08 16 LS Contribution 397.96 15.07 6.00 6.00 Total: -1.00 -31.79 397.96 -11.98 -43.77 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -5.93 Total: 18.20 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -7.29 Total: -19.41 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.17 Total: -49.21 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.09 Total: -15.45 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.79 -11.98 -43.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096455515.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.218 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds