Wall clock time and date at job start Tue Mar 31 2020 06:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99631 * 2 1 4 4 H 1.48504 * 109.47204 * 239.99771 * 3 2 1 5 5 H 1.48501 * 109.47522 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46943 * 119.99777 * 3 2 1 7 7 C 1.38945 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00167 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.34767 * 120.00062 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99914 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00092 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46983 * 179.97438 * 12 10 9 14 14 C 1.46900 * 110.99792 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.47237 * 324.99400 * 14 13 12 16 16 C 1.50699 * 109.47538 * 85.00065 * 14 13 12 17 17 C 1.38237 * 120.00160 * 39.72135 * 16 14 13 18 18 C 1.38230 * 119.99946 * 179.79184 * 17 16 14 19 19 C 1.38231 * 120.00348 * 0.46368 * 18 17 16 20 20 C 1.38240 * 119.99711 * 359.77277 * 19 18 17 21 21 C 1.38234 * 120.00050 * 0.02562 * 20 19 18 22 22 C 1.50697 * 109.47022 * 205.00151 * 14 13 12 23 23 C 1.36130 * 120.17534 * 339.99393 * 22 14 13 24 24 C 1.39329 * 120.99258 * 179.97438 * 23 22 14 25 25 C 1.36125 * 120.98923 * 359.97438 * 24 23 22 26 26 C 1.40501 * 119.65263 * 0.02562 * 25 24 23 27 27 C 1.40557 * 121.28769 * 179.97438 * 26 25 24 28 28 C 1.36081 * 119.65010 * 180.02562 * 27 26 25 29 29 C 1.39383 * 120.99897 * 0.02562 * 28 27 26 30 30 C 1.36094 * 120.98995 * 359.95151 * 29 28 27 31 31 C 1.40507 * 120.17539 * 159.97725 * 22 14 13 32 32 H 0.97001 * 120.00022 * 0.02562 * 1 2 3 33 33 H 0.97005 * 119.99489 * 359.97438 * 9 7 2 34 34 H 1.09001 * 109.46892 * 60.00105 * 12 10 9 35 35 H 1.08995 * 109.47102 * 300.00168 * 12 10 9 36 36 H 1.00897 * 111.00635 * 56.04811 * 13 12 10 37 37 H 1.08005 * 119.99333 * 0.02562 * 17 16 14 38 38 H 1.08003 * 119.99727 * 180.25929 * 18 17 16 39 39 H 1.08001 * 120.00354 * 179.78625 * 19 18 17 40 40 H 1.07999 * 120.00034 * 179.97438 * 20 19 18 41 41 H 1.08003 * 119.99868 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.50276 * 0.02562 * 23 22 14 43 43 H 1.07999 * 119.50947 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.17668 * 179.72489 * 25 24 23 45 45 H 1.07995 * 120.17070 * 0.02562 * 27 26 25 46 46 H 1.08000 * 119.50492 * 180.02562 * 28 27 26 47 47 H 1.08004 * 119.50833 * 179.97438 * 29 28 27 48 48 H 1.08000 * 120.16912 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6965 1.2126 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5577 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9794 -0.0005 14 6 1.4983 -7.2707 -0.0017 15 1 0.5849 -7.1894 0.5875 16 6 1.1504 -7.6524 -1.4175 17 6 2.0513 -7.4145 -2.4387 18 6 1.7339 -7.7685 -3.7367 19 6 0.5119 -8.3516 -4.0150 20 6 -0.3910 -8.5849 -2.9945 21 6 -0.0719 -8.2348 -1.6959 22 6 2.3906 -8.3265 0.5983 23 6 3.7361 -8.1296 0.6624 24 6 4.5768 -9.0940 1.2141 25 6 4.0772 -10.2611 1.7054 26 6 2.6935 -10.5001 1.6566 27 6 2.1409 -11.6931 2.1535 28 6 0.7959 -11.8901 2.0888 29 6 -0.0451 -10.9258 1.5360 30 6 0.4542 -9.7586 1.0456 31 6 1.8382 -9.5193 1.0948 32 1 -0.4850 0.8400 -0.0004 33 1 0.3534 -2.3906 0.0005 34 1 0.6176 -4.9205 -0.8903 35 1 0.6169 -4.9209 0.8896 36 1 2.8334 -5.9127 0.7808 37 1 3.0046 -6.9556 -2.2217 38 1 2.4395 -7.5865 -4.5339 39 1 0.2625 -8.6250 -5.0296 40 1 -1.3459 -9.0401 -3.2120 41 1 -0.7775 -8.4167 -0.8987 42 1 4.1580 -7.2117 0.2807 43 1 5.6407 -8.9127 1.2532 44 1 4.7414 -11.0015 2.1262 45 1 2.7802 -12.4494 2.5842 46 1 0.3737 -12.8075 2.4717 47 1 -1.1090 -11.1074 1.4966 48 1 -0.2096 -9.0204 0.6205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096455515.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:41 Heat of formation + Delta-G solvation = 25.995366 kcal Electronic energy + Delta-G solvation = -31047.705982 eV Core-core repulsion = 27031.350563 eV Total energy + Delta-G solvation = -4016.355419 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.158 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.74303 -40.29251 -39.86325 -37.89786 -36.67715 -35.91069 -33.86181 -33.24380 -31.97132 -31.73959 -31.14300 -30.35222 -28.45131 -26.67466 -25.32402 -24.24261 -23.66582 -23.32534 -22.76464 -21.14735 -20.96016 -19.93545 -18.42461 -18.19078 -17.98629 -17.49408 -17.13882 -16.73281 -16.49450 -16.16868 -15.99904 -15.72153 -15.49013 -15.32305 -14.94051 -14.72745 -14.55255 -14.30719 -14.25794 -14.10244 -13.89829 -13.77044 -13.52792 -13.48551 -13.38413 -12.98654 -12.77427 -12.73208 -12.44284 -12.24795 -12.13415 -11.93617 -11.90768 -11.79186 -11.52748 -11.51149 -10.76885 -10.36994 -10.02995 -9.74426 -9.58352 -9.52626 -9.46442 -8.74379 -8.47340 -5.96311 -0.39294 0.11873 0.49589 0.59167 1.13654 1.38892 1.40708 1.51769 2.03095 2.11773 2.27527 2.77018 2.93941 3.18258 3.19597 3.43668 3.63877 3.85248 3.88669 3.99383 4.00793 4.11894 4.18148 4.22509 4.24884 4.32512 4.34745 4.37850 4.45779 4.51675 4.56195 4.57238 4.69097 4.69825 4.77983 4.88198 5.04181 5.13794 5.22562 5.24269 5.32571 5.39027 5.39806 5.50403 5.60235 5.61188 5.68446 5.69164 5.73875 5.92745 5.93294 6.08474 6.13812 6.17415 6.29890 6.58302 7.10994 7.54136 8.08987 8.69951 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.011146 B = 0.002572 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.619676 B =10885.739506 C =11906.436080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.334 4.334 8 H 0.080 0.920 9 N -0.572 5.572 10 C 0.442 3.558 11 O -0.619 6.619 12 C 0.067 3.933 13 N -0.665 5.665 14 C 0.173 3.827 15 H 0.069 0.931 16 C -0.077 4.077 17 C -0.102 4.102 18 C -0.138 4.138 19 C -0.126 4.126 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.081 4.081 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.108 4.108 26 C -0.072 4.072 27 C -0.112 4.112 28 C -0.121 4.121 29 C -0.116 4.116 30 C -0.126 4.126 31 C -0.057 4.057 32 H 0.278 0.722 33 H 0.396 0.604 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.349 0.651 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.123 0.877 43 H 0.140 0.860 44 H 0.152 0.848 45 H 0.149 0.851 46 H 0.149 0.851 47 H 0.145 0.855 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 -26.429 0.815 26.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.463 4.463 8 H 0.098 0.902 9 N -0.209 5.209 10 C 0.229 3.771 11 O -0.506 6.506 12 C -0.065 4.065 13 N -0.299 5.299 14 C 0.064 3.936 15 H 0.086 0.914 16 C -0.078 4.078 17 C -0.120 4.120 18 C -0.156 4.156 19 C -0.144 4.144 20 C -0.143 4.143 21 C -0.141 4.141 22 C -0.081 4.081 23 C -0.135 4.135 24 C -0.141 4.141 25 C -0.126 4.126 26 C -0.072 4.072 27 C -0.129 4.129 28 C -0.139 4.139 29 C -0.134 4.134 30 C -0.144 4.144 31 C -0.057 4.057 32 H 0.087 0.913 33 H 0.229 0.771 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.170 0.830 37 H 0.128 0.872 38 H 0.146 0.854 39 H 0.159 0.841 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.141 0.859 43 H 0.158 0.842 44 H 0.170 0.830 45 H 0.167 0.833 46 H 0.167 0.833 47 H 0.163 0.837 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.807 -26.235 0.152 26.298 hybrid contribution -0.171 1.342 0.727 1.536 sum -1.979 -24.893 0.879 24.987 Atomic orbital electron populations 1.69669 1.06852 1.29384 1.50222 1.26046 0.96547 1.02425 0.96231 0.84996 0.77782 0.76631 0.78975 1.19749 1.19428 1.19605 1.19631 0.92710 0.83950 1.50035 0.90250 1.41908 1.09300 1.04697 1.65004 1.20678 0.88206 0.85907 0.82313 1.90485 1.15611 1.87881 1.56590 1.21525 0.94001 0.88278 1.02684 1.60136 1.18700 0.99676 1.51388 1.19188 0.94906 0.86765 0.92747 0.91365 1.19677 0.94778 0.99430 0.93906 1.21041 0.99748 0.98222 0.92990 1.21394 0.98082 0.99633 0.96516 1.21436 0.93680 0.98941 1.00355 1.21382 1.00384 1.00193 0.92338 1.21268 0.95801 0.99212 0.97831 1.19587 0.94366 0.94888 0.99308 1.20937 0.93346 1.00106 0.99118 1.21081 1.00778 0.93877 0.98358 1.21342 0.94014 0.97890 0.99360 1.18386 0.93977 0.95133 0.99735 1.21325 0.96338 0.95978 0.99294 1.21215 0.93532 1.00130 0.99034 1.21201 1.01339 0.93393 0.97467 1.21350 0.93695 0.98949 1.00376 1.18055 0.94494 0.93809 0.99381 0.91268 0.77054 0.88585 0.91523 0.82965 0.87222 0.85415 0.84063 0.83579 0.84612 0.85913 0.84224 0.83010 0.83307 0.83317 0.83677 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.28 13.05 21.66 0.28 -50.00 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 3 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.33 -19.22 9.68 84.04 0.81 -18.40 16 8 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 9 N -0.57 -29.96 5.29 -306.99 -1.62 -31.58 16 10 C 0.44 21.49 7.82 87.66 0.69 22.18 16 11 O -0.62 -34.63 15.78 -3.07 -0.05 -34.68 16 12 C 0.07 2.45 5.96 85.56 0.51 2.96 16 13 N -0.67 -22.23 4.45 -503.39 -2.24 -24.47 16 14 C 0.17 4.76 1.89 43.42 0.08 4.84 16 15 H 0.07 1.74 6.51 -2.39 -0.02 1.73 16 16 C -0.08 -2.10 4.61 -19.87 -0.09 -2.19 16 17 C -0.10 -3.01 9.32 22.27 0.21 -2.81 16 18 C -0.14 -3.53 10.05 22.27 0.22 -3.31 16 19 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 20 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 21 C -0.12 -2.78 8.78 22.27 0.20 -2.58 16 22 C -0.08 -2.17 4.98 -19.80 -0.10 -2.27 16 23 C -0.12 -3.16 8.81 22.04 0.19 -2.97 16 24 C -0.12 -2.76 9.95 22.04 0.22 -2.54 16 25 C -0.11 -2.16 9.77 22.33 0.22 -1.94 16 26 C -0.07 -1.58 5.74 -21.30 -0.12 -1.70 16 27 C -0.11 -1.84 9.77 22.33 0.22 -1.63 16 28 C -0.12 -1.77 9.95 22.04 0.22 -1.55 16 29 C -0.12 -1.88 9.95 22.05 0.22 -1.66 16 30 C -0.13 -2.59 8.79 22.33 0.20 -2.40 16 31 C -0.06 -1.39 5.74 -21.30 -0.12 -1.51 16 32 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.40 19.78 7.90 -92.70 -0.73 19.04 16 34 H 0.10 3.34 8.00 -2.39 -0.02 3.32 16 35 H 0.07 2.14 8.06 -2.39 -0.02 2.12 16 36 H 0.35 12.26 6.67 -89.70 -0.60 11.66 16 37 H 0.11 3.65 7.71 -2.91 -0.02 3.63 16 38 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 40 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.14 2.45 6.01 -2.91 -0.02 2.43 16 42 H 0.12 3.66 6.63 -2.91 -0.02 3.64 16 43 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 44 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 45 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 46 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 47 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 48 H 0.13 2.47 3.97 -2.91 -0.01 2.45 16 Total: -1.00 -70.63 397.96 2.77 -67.86 By element: Atomic # 1 Polarization: 52.25 SS G_CDS: -0.31 Total: 51.94 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 4.68 Total: -24.50 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -3.58 Total: -106.05 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.05 Total: -34.68 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -70.63 2.77 -67.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096455515.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.860 kcal (2) G-P(sol) polarization free energy of solvation -70.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds