Wall clock time and date at job start Tue Mar 31 2020 06:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86793 * 119.99932 * 2 1 4 4 H 1.48505 * 109.47076 * 269.99665 * 3 2 1 5 5 H 1.48497 * 109.47575 * 30.00080 * 3 2 1 6 6 H 1.48501 * 109.47407 * 150.00103 * 3 2 1 7 7 C 1.38955 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99675 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99741 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99790 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99520 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00574 * 180.02562 * 10 9 7 13 13 N 1.46890 * 109.47400 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00080 * 179.97438 * 13 12 10 15 15 H 1.08994 * 109.46892 * 34.99683 * 14 13 12 16 16 C 1.50702 * 109.47008 * 275.00122 * 14 13 12 17 17 C 1.38234 * 119.99917 * 319.72638 * 16 14 13 18 18 C 1.38244 * 119.99752 * 179.81159 * 17 16 14 19 19 C 1.38239 * 119.99941 * 0.41657 * 18 17 16 20 20 C 1.38231 * 119.99776 * 359.81498 * 19 18 17 21 21 C 1.38234 * 120.00653 * 359.97438 * 20 19 18 22 22 C 1.50699 * 109.47144 * 155.00052 * 14 13 12 23 23 C 1.36122 * 120.17336 * 25.00314 * 22 14 13 24 24 C 1.39329 * 120.99059 * 180.02562 * 23 22 14 25 25 C 1.36135 * 120.98917 * 0.02562 * 24 23 22 26 26 C 1.40496 * 119.64918 * 359.97438 * 25 24 23 27 27 C 1.40549 * 121.28759 * 180.02562 * 26 25 24 28 28 C 1.36094 * 119.65575 * 179.97438 * 27 26 25 29 29 C 1.39379 * 120.99110 * 0.02874 * 28 27 26 30 30 C 1.36095 * 120.99632 * 359.95136 * 29 28 27 31 31 C 1.40498 * 120.17147 * 205.01948 * 22 14 13 32 32 H 0.97003 * 120.00376 * 0.02562 * 1 2 3 33 33 H 0.97001 * 120.00561 * 0.02562 * 9 7 2 34 34 H 1.08996 * 109.46670 * 59.99654 * 12 10 9 35 35 H 1.09000 * 109.46558 * 300.00301 * 12 10 9 36 36 H 1.00898 * 110.99939 * 303.95429 * 13 12 10 37 37 H 1.07997 * 120.00160 * 359.97438 * 17 16 14 38 38 H 1.08000 * 119.99960 * 180.20785 * 18 17 16 39 39 H 1.07997 * 119.99542 * 179.79179 * 19 18 17 40 40 H 1.07999 * 119.99898 * 179.97438 * 20 19 18 41 41 H 1.07997 * 120.00607 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.50985 * 0.04062 * 23 22 14 43 43 H 1.07998 * 119.50932 * 180.02562 * 24 23 22 44 44 H 1.07993 * 120.17200 * 179.70094 * 25 24 23 45 45 H 1.08001 * 120.17178 * 359.93364 * 27 26 25 46 46 H 1.07990 * 119.50654 * 179.97438 * 28 27 26 47 47 H 1.08003 * 119.50208 * 179.97438 * 29 28 27 48 48 H 1.07997 * 120.17705 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0016 10 6 1.9971 -3.5579 0.0026 11 8 3.2101 -3.5578 0.0031 12 6 1.2437 -4.8630 0.0032 13 7 2.1982 -5.9795 0.0037 14 6 1.4979 -7.2709 0.0049 15 1 0.5845 -7.1894 -0.5842 16 6 1.1501 -7.6523 1.4208 17 6 2.0555 -7.4249 2.4402 18 6 1.7349 -7.7713 3.7395 19 6 0.5122 -8.3530 4.0181 20 6 -0.3913 -8.5848 2.9979 21 6 -0.0725 -8.2345 1.6992 22 6 2.3902 -8.3268 -0.5951 23 6 3.7428 -8.1758 -0.5677 24 6 4.5836 -9.1410 -1.1177 25 6 4.0770 -10.2629 -1.6990 26 6 2.6858 -10.4536 -1.7461 27 6 2.1257 -11.5991 -2.3373 28 6 0.7734 -11.7502 -2.3642 29 6 -0.0677 -10.7846 -1.8140 30 6 0.4387 -9.6629 -1.2330 31 6 1.8304 -9.4719 -1.1859 32 1 -0.4851 0.8400 -0.0004 33 1 0.3533 -2.3906 0.0016 34 1 0.6174 -4.9213 -0.8869 35 1 0.6167 -4.9201 0.8930 36 1 2.8331 -5.9128 -0.7777 37 1 3.0124 -6.9742 2.2220 38 1 2.4409 -7.5905 4.5365 39 1 0.2631 -8.6266 5.0327 40 1 -1.3464 -9.0396 3.2154 41 1 -0.7782 -8.4160 0.9021 42 1 4.1706 -7.2948 -0.1126 43 1 5.6534 -8.9970 -1.0825 44 1 4.7407 -11.0003 -2.1256 45 1 2.7651 -12.3551 -2.7687 46 1 0.3456 -12.6311 -2.8194 47 1 -1.1375 -10.9288 -1.8490 48 1 -0.2253 -8.9234 -0.8104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096455516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:48 Heat of formation + Delta-G solvation = 40.377928 kcal Electronic energy + Delta-G solvation = -31022.766656 eV Core-core repulsion = 27007.034911 eV Total energy + Delta-G solvation = -4015.731744 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.158 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.85923 -39.19797 -38.19122 -36.93150 -35.63206 -33.93081 -32.77367 -31.24698 -30.99614 -30.76071 -30.34499 -29.45123 -27.03598 -25.16806 -23.86028 -23.45210 -22.79195 -22.36723 -21.87718 -20.03837 -19.26976 -17.92473 -17.61449 -17.18859 -16.70170 -16.59695 -15.84727 -15.55851 -15.12019 -14.93914 -14.55451 -14.41603 -14.23752 -14.03429 -13.88722 -13.68424 -13.62393 -13.27115 -13.17558 -13.03641 -12.90474 -12.60608 -12.35620 -12.17865 -11.92056 -11.57048 -11.51068 -11.42393 -11.07196 -11.04840 -10.99022 -10.97348 -10.66889 -10.39087 -10.21349 -9.93992 -9.50263 -8.78877 -8.69847 -8.63873 -8.47651 -8.15198 -7.95665 -7.93604 -6.40975 -3.81702 0.40230 0.92837 1.43956 1.55373 1.94571 2.90713 3.18191 3.26862 3.32775 3.87269 3.91248 4.00324 4.01151 4.25415 4.48242 4.70831 4.75332 4.77939 4.86260 4.91380 5.01238 5.06822 5.10620 5.14085 5.21485 5.25106 5.28572 5.30695 5.40350 5.47516 5.59941 5.64244 5.75609 5.80589 5.84557 5.98915 6.00160 6.04843 6.10544 6.17285 6.19450 6.25761 6.32042 6.44833 6.53606 6.55876 6.64928 6.70366 6.74022 6.91606 7.11787 7.20077 7.55837 7.59083 8.06732 8.61710 9.18409 9.55003 10.06114 10.76789 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.002582 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.413466 B =10842.980854 C =11842.210155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.658 5.658 14 C 0.165 3.835 15 H 0.061 0.939 16 C -0.067 4.067 17 C -0.077 4.077 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.117 4.117 22 C -0.069 4.069 23 C -0.099 4.099 24 C -0.109 4.109 25 C -0.113 4.113 26 C -0.052 4.052 27 C -0.107 4.107 28 C -0.120 4.120 29 C -0.120 4.120 30 C -0.106 4.106 31 C -0.039 4.039 32 H 0.271 0.729 33 H 0.392 0.608 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.355 0.645 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.141 0.859 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.870 -24.289 -0.626 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.229 3.771 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.292 5.292 14 C 0.055 3.945 15 H 0.079 0.921 16 C -0.068 4.068 17 C -0.095 4.095 18 C -0.144 4.144 19 C -0.142 4.142 20 C -0.144 4.144 21 C -0.136 4.136 22 C -0.070 4.070 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.131 4.131 26 C -0.052 4.052 27 C -0.125 4.125 28 C -0.138 4.138 29 C -0.138 4.138 30 C -0.123 4.123 31 C -0.040 4.040 32 H 0.081 0.919 33 H 0.225 0.775 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.176 0.824 37 H 0.150 0.850 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.158 0.842 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.090 -24.079 0.042 24.080 hybrid contribution -0.684 0.834 -0.848 1.372 sum -0.773 -23.246 -0.806 23.272 Atomic orbital electron populations 1.69613 1.05938 1.28144 1.50601 1.25261 0.95628 0.99715 0.97349 0.85864 0.79262 0.80845 0.78360 1.20436 1.20928 1.19400 1.19693 0.93347 0.82208 1.47550 0.87920 1.41851 1.09208 1.04590 1.64309 1.19731 0.88340 0.84614 0.84463 1.90516 1.13679 1.87059 1.55493 1.21718 0.94343 0.90781 1.01330 1.60154 1.18692 0.98919 1.51397 1.19240 0.94879 0.88094 0.92261 0.92101 1.19627 0.94071 0.98706 0.94358 1.21083 1.00025 0.96728 0.91714 1.21197 0.96970 0.99379 0.96870 1.21104 0.94396 0.99788 0.98873 1.20991 0.99397 1.01115 0.92887 1.20987 0.96253 0.99647 0.96695 1.19599 0.94354 0.94818 0.98212 1.20945 0.92807 0.99685 0.98314 1.20910 1.00132 0.93919 0.97744 1.21010 0.93679 0.98229 1.00187 1.18040 0.93442 0.94666 0.99068 1.20998 0.95391 0.96719 0.99383 1.20817 0.93688 0.99228 1.00074 1.20830 0.99884 0.94404 0.98639 1.21161 0.94075 0.98084 0.99022 1.17867 0.93357 0.94197 0.98538 0.91882 0.77470 0.93717 0.89479 0.82371 0.84972 0.86304 0.86573 0.86467 0.86623 0.84155 0.85761 0.85779 0.85786 0.86207 0.86116 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C 0.44 10.39 7.82 -10.98 -0.09 10.31 16 11 O -0.58 -15.55 15.78 5.55 0.09 -15.46 16 12 C 0.05 0.90 5.96 -4.98 -0.03 0.87 16 13 N -0.66 -10.45 4.42 -110.46 -0.49 -10.94 16 14 C 0.17 2.21 1.89 -70.01 -0.13 2.07 16 15 H 0.06 0.78 6.22 -51.93 -0.32 0.46 16 16 C -0.07 -0.90 4.70 -104.62 -0.49 -1.39 16 17 C -0.08 -1.09 9.32 -39.58 -0.37 -1.46 16 18 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 19 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 20 C -0.13 -1.42 10.05 -39.59 -0.40 -1.82 16 21 C -0.12 -1.41 9.14 -39.58 -0.36 -1.77 16 22 C -0.07 -0.89 4.91 -104.53 -0.51 -1.41 16 23 C -0.10 -1.25 8.79 -39.94 -0.35 -1.60 16 24 C -0.11 -1.19 9.95 -39.93 -0.40 -1.58 16 25 C -0.11 -1.17 9.77 -39.49 -0.39 -1.56 16 26 C -0.05 -0.60 5.74 -106.83 -0.61 -1.21 16 27 C -0.11 -1.02 9.77 -39.48 -0.39 -1.41 16 28 C -0.12 -1.07 9.95 -39.93 -0.40 -1.47 16 29 C -0.12 -1.13 9.95 -39.93 -0.40 -1.52 16 30 C -0.11 -1.16 9.06 -39.48 -0.36 -1.51 16 31 C -0.04 -0.48 5.74 -106.83 -0.61 -1.10 16 32 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 34 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 35 H 0.09 1.50 8.00 -51.93 -0.42 1.09 16 36 H 0.35 5.84 6.96 -39.29 -0.27 5.56 16 37 H 0.13 1.97 7.73 -52.49 -0.41 1.57 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.17 6.29 -52.49 -0.33 0.84 16 42 H 0.14 1.85 6.90 -52.49 -0.36 1.49 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 48 H 0.13 1.26 4.36 -52.49 -0.23 1.04 16 LS Contribution 399.53 15.07 6.02 6.02 Total: -1.00 -31.83 399.53 -12.03 -43.85 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -5.97 Total: 18.05 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -7.32 Total: -19.35 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.18 Total: -49.22 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.09 Total: -15.46 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.83 -12.03 -43.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096455516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.231 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds