Wall clock time and date at job start Tue Mar 31 2020 06:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86793 * 119.99932 * 2 1 4 4 H 1.48505 * 109.47076 * 269.99665 * 3 2 1 5 5 H 1.48497 * 109.47575 * 30.00080 * 3 2 1 6 6 H 1.48501 * 109.47407 * 150.00103 * 3 2 1 7 7 C 1.38955 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99675 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99741 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99790 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99520 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00574 * 180.02562 * 10 9 7 13 13 N 1.46890 * 109.47400 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00080 * 179.97438 * 13 12 10 15 15 H 1.08994 * 109.46892 * 34.99683 * 14 13 12 16 16 C 1.50702 * 109.47008 * 275.00122 * 14 13 12 17 17 C 1.38234 * 119.99917 * 319.72638 * 16 14 13 18 18 C 1.38244 * 119.99752 * 179.81159 * 17 16 14 19 19 C 1.38239 * 119.99941 * 0.41657 * 18 17 16 20 20 C 1.38231 * 119.99776 * 359.81498 * 19 18 17 21 21 C 1.38234 * 120.00653 * 359.97438 * 20 19 18 22 22 C 1.50699 * 109.47144 * 155.00052 * 14 13 12 23 23 C 1.36122 * 120.17336 * 25.00314 * 22 14 13 24 24 C 1.39329 * 120.99059 * 180.02562 * 23 22 14 25 25 C 1.36135 * 120.98917 * 0.02562 * 24 23 22 26 26 C 1.40496 * 119.64918 * 359.97438 * 25 24 23 27 27 C 1.40549 * 121.28759 * 180.02562 * 26 25 24 28 28 C 1.36094 * 119.65575 * 179.97438 * 27 26 25 29 29 C 1.39379 * 120.99110 * 0.02874 * 28 27 26 30 30 C 1.36095 * 120.99632 * 359.95136 * 29 28 27 31 31 C 1.40498 * 120.17147 * 205.01948 * 22 14 13 32 32 H 0.97003 * 120.00376 * 0.02562 * 1 2 3 33 33 H 0.97001 * 120.00561 * 0.02562 * 9 7 2 34 34 H 1.08996 * 109.46670 * 59.99654 * 12 10 9 35 35 H 1.09000 * 109.46558 * 300.00301 * 12 10 9 36 36 H 1.00898 * 110.99939 * 303.95429 * 13 12 10 37 37 H 1.07997 * 120.00160 * 359.97438 * 17 16 14 38 38 H 1.08000 * 119.99960 * 180.20785 * 18 17 16 39 39 H 1.07997 * 119.99542 * 179.79179 * 19 18 17 40 40 H 1.07999 * 119.99898 * 179.97438 * 20 19 18 41 41 H 1.07997 * 120.00607 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.50985 * 0.04062 * 23 22 14 43 43 H 1.07998 * 119.50932 * 180.02562 * 24 23 22 44 44 H 1.07993 * 120.17200 * 179.70094 * 25 24 23 45 45 H 1.08001 * 120.17178 * 359.93364 * 27 26 25 46 46 H 1.07990 * 119.50654 * 179.97438 * 28 27 26 47 47 H 1.08003 * 119.50208 * 179.97438 * 29 28 27 48 48 H 1.07997 * 120.17705 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0016 10 6 1.9971 -3.5579 0.0026 11 8 3.2101 -3.5578 0.0031 12 6 1.2437 -4.8630 0.0032 13 7 2.1982 -5.9795 0.0037 14 6 1.4979 -7.2709 0.0049 15 1 0.5845 -7.1894 -0.5842 16 6 1.1501 -7.6523 1.4208 17 6 2.0555 -7.4249 2.4402 18 6 1.7349 -7.7713 3.7395 19 6 0.5122 -8.3530 4.0181 20 6 -0.3913 -8.5848 2.9979 21 6 -0.0725 -8.2345 1.6992 22 6 2.3902 -8.3268 -0.5951 23 6 3.7428 -8.1758 -0.5677 24 6 4.5836 -9.1410 -1.1177 25 6 4.0770 -10.2629 -1.6990 26 6 2.6858 -10.4536 -1.7461 27 6 2.1257 -11.5991 -2.3373 28 6 0.7734 -11.7502 -2.3642 29 6 -0.0677 -10.7846 -1.8140 30 6 0.4387 -9.6629 -1.2330 31 6 1.8304 -9.4719 -1.1859 32 1 -0.4851 0.8400 -0.0004 33 1 0.3533 -2.3906 0.0016 34 1 0.6174 -4.9213 -0.8869 35 1 0.6167 -4.9201 0.8930 36 1 2.8331 -5.9128 -0.7777 37 1 3.0124 -6.9742 2.2220 38 1 2.4409 -7.5905 4.5365 39 1 0.2631 -8.6266 5.0327 40 1 -1.3464 -9.0396 3.2154 41 1 -0.7782 -8.4160 0.9021 42 1 4.1706 -7.2948 -0.1126 43 1 5.6534 -8.9970 -1.0825 44 1 4.7407 -11.0003 -2.1256 45 1 2.7651 -12.3551 -2.7687 46 1 0.3456 -12.6311 -2.8194 47 1 -1.1375 -10.9288 -1.8490 48 1 -0.2253 -8.9234 -0.8104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096455516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:47 Heat of formation + Delta-G solvation = 23.949707 kcal Electronic energy + Delta-G solvation = -31023.479037 eV Core-core repulsion = 27007.034911 eV Total energy + Delta-G solvation = -4016.444126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.158 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.72697 -40.29632 -39.86465 -37.87556 -36.68567 -35.91102 -33.84619 -33.24159 -31.98512 -31.73210 -31.15058 -30.32358 -28.46536 -26.67345 -25.30024 -24.23228 -23.70202 -23.29483 -22.77918 -21.14228 -20.95383 -19.93535 -18.42674 -18.16885 -17.95675 -17.52933 -17.13418 -16.73621 -16.49266 -16.16038 -15.97967 -15.71771 -15.49037 -15.31035 -14.93276 -14.73849 -14.54395 -14.30628 -14.25634 -14.10599 -13.94889 -13.74009 -13.53322 -13.49812 -13.37702 -12.99593 -12.78134 -12.73244 -12.42873 -12.25373 -12.13255 -11.93437 -11.90604 -11.80348 -11.53496 -11.51681 -10.77275 -10.36924 -10.02837 -9.74467 -9.58373 -9.52239 -9.46415 -8.74327 -8.47531 -5.96299 -0.39416 0.11875 0.49639 0.59256 1.13446 1.36967 1.40752 1.53664 2.02993 2.11842 2.27526 2.77479 2.93952 3.18328 3.19460 3.43359 3.64295 3.85896 3.90458 3.99789 4.00597 4.12104 4.17910 4.23061 4.25019 4.32310 4.34526 4.37993 4.45814 4.51052 4.56009 4.57041 4.69226 4.70196 4.78006 4.88597 5.03928 5.13870 5.22790 5.24195 5.32466 5.39142 5.39946 5.50889 5.60408 5.61137 5.68147 5.69296 5.73699 5.92962 5.93267 6.08701 6.13648 6.17514 6.30363 6.58321 7.11126 7.54159 8.09054 8.70007 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.002582 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.413466 B =10842.980854 C =11842.210155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.333 4.333 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.442 3.558 11 O -0.619 6.619 12 C 0.068 3.932 13 N -0.665 5.665 14 C 0.173 3.827 15 H 0.069 0.931 16 C -0.077 4.077 17 C -0.101 4.101 18 C -0.138 4.138 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.082 4.082 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.108 4.108 26 C -0.072 4.072 27 C -0.111 4.111 28 C -0.122 4.122 29 C -0.116 4.116 30 C -0.125 4.125 31 C -0.057 4.057 32 H 0.278 0.722 33 H 0.396 0.604 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.349 0.651 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.135 0.865 42 H 0.122 0.878 43 H 0.140 0.860 44 H 0.152 0.848 45 H 0.149 0.851 46 H 0.149 0.851 47 H 0.145 0.855 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.501 -26.335 -1.056 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.209 5.209 10 C 0.229 3.771 11 O -0.505 6.505 12 C -0.065 4.065 13 N -0.298 5.298 14 C 0.064 3.936 15 H 0.086 0.914 16 C -0.078 4.078 17 C -0.120 4.120 18 C -0.156 4.156 19 C -0.144 4.144 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.082 4.082 23 C -0.132 4.132 24 C -0.141 4.141 25 C -0.126 4.126 26 C -0.073 4.073 27 C -0.129 4.129 28 C -0.139 4.139 29 C -0.134 4.134 30 C -0.143 4.143 31 C -0.057 4.057 32 H 0.087 0.913 33 H 0.229 0.771 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.170 0.830 37 H 0.128 0.872 38 H 0.146 0.854 39 H 0.159 0.841 40 H 0.164 0.836 41 H 0.153 0.847 42 H 0.140 0.860 43 H 0.158 0.842 44 H 0.170 0.830 45 H 0.167 0.833 46 H 0.167 0.833 47 H 0.163 0.837 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.747 -26.144 -0.386 26.205 hybrid contribution -0.200 1.332 -0.722 1.528 sum -1.947 -24.812 -1.107 24.913 Atomic orbital electron populations 1.69675 1.06848 1.29310 1.50306 1.26047 0.96547 1.02422 0.96264 0.84931 0.77885 0.76864 0.78688 1.19540 1.19509 1.19797 1.19660 0.92691 0.83945 1.49914 0.90275 1.41912 1.09299 1.04702 1.65027 1.20686 0.88206 0.85912 0.82289 1.90487 1.15619 1.87883 1.56561 1.21521 0.94002 0.88276 1.02666 1.60117 1.18677 0.99658 1.51344 1.19198 0.94912 0.86746 0.92722 0.91375 1.19690 0.94731 0.99432 0.93968 1.21046 0.99709 0.98241 0.92969 1.21402 0.98060 0.99649 0.96516 1.21435 0.93710 0.98942 1.00345 1.21377 1.00375 1.00234 0.92372 1.21244 0.95858 0.99156 0.97825 1.19574 0.94255 0.95295 0.99087 1.20926 0.93303 0.99814 0.99154 1.21090 1.00811 0.94039 0.98203 1.21343 0.93919 0.98218 0.99085 1.18381 0.93919 0.95380 0.99573 1.21330 0.96260 0.96447 0.98849 1.21214 0.93503 0.99915 0.99313 1.21198 1.01369 0.93627 0.97172 1.21283 0.93549 0.99188 1.00286 1.18064 0.94407 0.94248 0.99008 0.91283 0.77057 0.91550 0.88584 0.83044 0.87153 0.85376 0.84072 0.83644 0.84747 0.85962 0.84218 0.83010 0.83295 0.83319 0.83701 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.28 13.05 21.66 0.28 -50.00 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.33 -19.16 9.68 84.04 0.81 -18.34 16 8 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 9 N -0.57 -29.98 5.29 -306.98 -1.62 -31.60 16 10 C 0.44 21.50 7.82 87.66 0.69 22.18 16 11 O -0.62 -34.65 15.78 -3.07 -0.05 -34.70 16 12 C 0.07 2.45 5.96 85.56 0.51 2.96 16 13 N -0.66 -22.17 4.42 -503.40 -2.23 -24.40 16 14 C 0.17 4.75 1.89 43.42 0.08 4.83 16 15 H 0.07 1.74 6.22 -2.39 -0.01 1.72 16 16 C -0.08 -2.10 4.70 -19.86 -0.09 -2.20 16 17 C -0.10 -2.99 9.32 22.27 0.21 -2.78 16 18 C -0.14 -3.53 10.05 22.27 0.22 -3.30 16 19 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 20 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 21 C -0.12 -2.79 9.14 22.27 0.20 -2.59 16 22 C -0.08 -2.18 4.91 -19.81 -0.10 -2.28 16 23 C -0.11 -3.06 8.79 22.04 0.19 -2.86 16 24 C -0.12 -2.75 9.95 22.04 0.22 -2.53 16 25 C -0.11 -2.14 9.77 22.33 0.22 -1.92 16 26 C -0.07 -1.58 5.74 -21.30 -0.12 -1.70 16 27 C -0.11 -1.83 9.77 22.33 0.22 -1.61 16 28 C -0.12 -1.78 9.95 22.05 0.22 -1.56 16 29 C -0.12 -1.88 9.95 22.05 0.22 -1.66 16 30 C -0.13 -2.58 9.06 22.34 0.20 -2.37 16 31 C -0.06 -1.38 5.74 -21.30 -0.12 -1.51 16 32 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.40 19.78 7.90 -92.71 -0.73 19.04 16 34 H 0.07 2.13 8.06 -2.39 -0.02 2.11 16 35 H 0.10 3.34 8.00 -2.39 -0.02 3.32 16 36 H 0.35 12.28 6.96 -89.70 -0.62 11.65 16 37 H 0.11 3.64 7.73 -2.91 -0.02 3.61 16 38 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 39 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 41 H 0.13 2.46 6.29 -2.91 -0.02 2.44 16 42 H 0.12 3.62 6.90 -2.91 -0.02 3.60 16 43 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 44 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 45 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 46 H 0.15 1.28 8.06 -2.92 -0.02 1.26 16 47 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 48 H 0.13 2.44 4.36 -2.91 -0.01 2.42 16 Total: -1.00 -70.63 399.53 2.77 -67.86 By element: Atomic # 1 Polarization: 52.04 SS G_CDS: -0.34 Total: 51.70 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 4.70 Total: -24.33 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -3.57 Total: -106.00 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -0.05 Total: -34.70 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -70.63 2.77 -67.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096455516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.811 kcal (2) G-P(sol) polarization free energy of solvation -70.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds