Wall clock time and date at job start Tue Mar 31 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86791 * 120.00059 * 2 1 4 4 H 1.48503 * 109.46823 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47465 * 299.99461 * 3 2 1 6 6 H 1.48503 * 109.47429 * 59.99880 * 3 2 1 7 7 C 1.38807 * 119.99584 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99874 * 164.23157 * 7 2 1 9 9 N 1.36940 * 120.00403 * 344.23393 * 7 2 1 10 10 C 1.46924 * 120.63285 * 149.40384 * 9 7 2 11 11 C 1.53201 * 108.77633 * 126.41434 * 10 9 7 12 12 C 1.53036 * 109.30937 * 54.63431 * 11 10 9 13 13 H 1.09000 * 109.45861 * 58.64638 * 12 11 10 14 14 C 1.50701 * 109.45700 * 178.61551 * 12 11 10 15 15 C 1.38243 * 119.97768 * 50.51266 * 14 12 11 16 16 C 1.38197 * 120.02698 * 180.02562 * 15 14 12 17 17 C 1.38455 * 119.97569 * 0.22774 * 16 15 14 18 18 F 1.35097 * 120.02901 * 179.72677 * 17 16 15 19 19 C 1.38465 * 119.94844 * 359.49501 * 17 16 15 20 20 C 1.38197 * 119.96857 * 0.52849 * 19 17 16 21 21 C 1.53040 * 109.53930 * 298.63731 * 12 11 10 22 22 H 1.09003 * 109.49268 * 181.31606 * 21 12 11 23 23 N 1.46497 * 109.49721 * 301.40944 * 21 12 11 24 24 C 1.34772 * 120.00136 * 210.62389 * 23 21 12 25 25 O 1.21281 * 120.00168 * 0.02562 * 24 23 21 26 26 C 1.50702 * 119.99906 * 180.02562 * 24 23 21 27 27 F 1.39904 * 109.47193 * 180.02562 * 26 24 23 28 28 F 1.39899 * 109.47171 * 299.99876 * 26 24 23 29 29 F 1.39902 * 109.47196 * 60.00185 * 26 24 23 30 30 C 1.46927 * 120.62904 * 329.43120 * 9 7 2 31 31 H 0.96998 * 119.99829 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.58865 * 6.63041 * 10 9 7 33 33 H 1.09000 * 109.58989 * 246.20205 * 10 9 7 34 34 H 1.08997 * 109.49658 * 294.68785 * 11 10 9 35 35 H 1.08994 * 109.49657 * 174.59016 * 11 10 9 36 36 H 1.08001 * 119.98488 * 0.02562 * 15 14 12 37 37 H 1.08000 * 120.01117 * 179.97438 * 16 15 14 38 38 H 1.07998 * 120.01640 * 180.25450 * 19 17 16 39 39 H 1.08009 * 119.98414 * 179.75149 * 20 19 17 40 40 H 0.97004 * 119.99654 * 30.63438 * 23 21 12 41 41 H 1.08999 * 109.58597 * 353.36607 * 30 9 7 42 42 H 1.09001 * 109.58724 * 113.65620 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0598 -1.2199 -0.2536 9 7 1.3641 -2.3656 0.3233 10 6 1.7842 -3.6438 -0.2671 11 6 2.0486 -4.6452 0.8618 12 6 0.8084 -4.7420 1.7531 13 1 -0.0463 -5.0552 1.1534 14 6 1.0525 -5.7515 2.8451 15 6 2.2000 -5.6753 3.6122 16 6 2.4252 -6.6008 4.6135 17 6 1.5033 -7.6075 4.8451 18 9 1.7250 -8.5162 5.8199 19 6 0.3515 -7.6795 4.0799 20 6 0.1288 -6.7531 3.0789 21 6 0.5190 -3.3751 2.3778 22 1 -0.3505 -3.4503 3.0307 23 7 1.6800 -2.9380 3.1569 24 6 1.5081 -2.1588 4.2431 25 8 0.3921 -1.8200 4.5758 26 6 2.7025 -1.7087 5.0442 27 9 2.2742 -0.9168 6.1151 28 9 3.3832 -2.8279 5.5355 29 9 3.5589 -0.9639 4.2262 30 6 0.2373 -2.3594 1.2661 31 1 -0.4850 0.8400 -0.0004 32 1 2.6959 -3.4968 -0.8460 33 1 0.9946 -4.0240 -0.9153 34 1 2.8980 -4.3079 1.4557 35 1 2.2678 -5.6241 0.4357 36 1 2.9208 -4.8921 3.4290 37 1 3.3219 -6.5413 5.2124 38 1 -0.3703 -8.4618 4.2623 39 1 -0.7677 -6.8114 2.4792 40 1 2.5726 -3.2092 2.8909 41 1 0.1284 -1.3650 1.6989 42 1 -0.6789 -2.6324 0.7424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096496455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:23 Heat of formation + Delta-G solvation = -178.610375 kcal Electronic energy + Delta-G solvation = -34440.119586 eV Core-core repulsion = 29306.432736 eV Total energy + Delta-G solvation = -5133.686849 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.120 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -50.17607 -48.95633 -47.72053 -47.64091 -40.45845 -39.01382 -37.40995 -34.33746 -33.19175 -31.37926 -31.23163 -29.87001 -28.94363 -27.18419 -25.34040 -23.41921 -22.82918 -22.56605 -21.39095 -21.07988 -19.17666 -19.11132 -18.61239 -18.33122 -17.76131 -16.95082 -16.27698 -15.93813 -15.74673 -15.66099 -15.15457 -15.06771 -14.64038 -14.43857 -14.32732 -14.18629 -14.07848 -13.82532 -13.79493 -13.77221 -13.62560 -13.41447 -13.30496 -13.19397 -13.10345 -12.72591 -12.19651 -12.17103 -11.74073 -11.58577 -11.20488 -11.06794 -10.83883 -10.80700 -10.39017 -10.20771 -10.08596 -9.92812 -9.81841 -9.21199 -8.90812 -8.63064 -8.49782 -6.78650 -5.90375 -3.36770 1.06776 1.14694 2.08279 2.18311 3.24347 3.32710 3.41720 3.42386 3.50358 3.87313 4.17395 4.28514 4.30904 4.40766 4.57730 4.68297 4.79570 5.02846 5.12750 5.18291 5.23623 5.33062 5.39823 5.48607 5.78857 5.87410 5.93272 5.99807 6.02473 6.05968 6.13661 6.20460 6.26456 6.36644 6.53618 6.60853 6.74844 6.81437 7.03761 7.24837 7.46722 7.70869 7.90430 8.33462 9.07618 9.70407 10.26023 11.18024 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.004480 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.961309 B = 6248.971751 C = 7901.982702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.011 3.989 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.587 5.587 10 C 0.142 3.858 11 C -0.129 4.129 12 C -0.051 4.051 13 H 0.096 0.904 14 C -0.078 4.078 15 C -0.083 4.083 16 C -0.149 4.149 17 C 0.086 3.914 18 F -0.145 7.145 19 C -0.152 4.152 20 C -0.087 4.087 21 C 0.126 3.874 22 H 0.090 0.910 23 N -0.667 5.667 24 C 0.483 3.517 25 O -0.486 6.486 26 C 0.445 3.555 27 F -0.159 7.159 28 F -0.175 7.175 29 F -0.163 7.163 30 C 0.162 3.838 31 H 0.255 0.745 32 H 0.059 0.941 33 H 0.023 0.977 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.404 0.596 41 H 0.095 0.905 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.750 -13.137 7.227 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.188 4.188 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.015 3.985 11 C -0.168 4.168 12 C -0.070 4.070 13 H 0.115 0.885 14 C -0.079 4.079 15 C -0.101 4.101 16 C -0.168 4.168 17 C 0.067 3.933 18 F -0.124 7.124 19 C -0.170 4.170 20 C -0.105 4.105 21 C 0.021 3.979 22 H 0.108 0.892 23 N -0.319 5.319 24 C 0.260 3.740 25 O -0.359 6.359 26 C 0.387 3.613 27 F -0.140 7.140 28 F -0.156 7.156 29 F -0.144 7.144 30 C 0.035 3.965 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.242 0.758 41 H 0.113 0.887 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.855 -12.766 7.468 15.063 hybrid contribution 1.153 0.742 0.308 1.405 sum 4.008 -12.024 7.776 14.870 Atomic orbital electron populations 1.69982 1.05298 1.25745 1.52981 1.25092 0.95243 0.98505 1.00009 0.86326 0.79541 0.84115 0.77440 1.20082 1.21581 1.21388 1.19115 0.92100 0.84330 1.43393 0.91626 1.43992 1.37123 1.02426 1.47446 1.20975 0.98335 0.86695 0.92476 1.22159 0.95870 1.00235 0.98530 1.20461 1.00755 0.91894 0.93895 0.88545 1.20119 0.94238 0.96182 0.97330 1.20910 0.97223 0.97703 0.94311 1.21125 0.99998 0.95359 1.00323 1.17704 0.96414 0.89826 0.89366 1.91479 1.94877 1.65434 1.60561 1.21108 0.97017 1.01531 0.97386 1.20957 0.99126 0.93594 0.96870 1.22117 0.87011 0.94258 0.94500 0.89173 1.45917 1.12190 1.48470 1.25313 1.20028 0.88881 0.81949 0.83153 1.90841 1.22599 1.54022 1.68473 1.20530 0.84601 0.76338 0.79817 1.93234 1.89714 1.74393 1.56639 1.93219 1.81652 1.52030 1.88745 1.93300 1.71982 1.77229 1.71896 1.21203 0.89809 0.97930 0.87582 0.93465 0.92241 0.95931 0.92517 0.91910 0.85652 0.84926 0.84984 0.84894 0.75800 0.88677 0.94488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 11.31 55.49 0.63 -24.18 16 2 C 0.01 0.30 4.92 -17.43 -0.09 0.21 16 3 Si 0.90 21.10 29.58 -169.99 -5.03 16.07 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.26 -6.47 9.56 -15.06 -0.14 -6.61 16 8 H 0.07 1.62 7.88 -52.48 -0.41 1.21 16 9 N -0.59 -12.63 2.90 -172.32 -0.50 -13.13 16 10 C 0.14 2.44 6.52 -3.71 -0.02 2.42 16 11 C -0.13 -1.70 4.86 -26.61 -0.13 -1.83 16 12 C -0.05 -0.66 2.21 -91.73 -0.20 -0.87 16 13 H 0.10 1.20 7.90 -51.93 -0.41 0.79 16 14 C -0.08 -0.92 4.78 -104.62 -0.50 -1.42 16 15 C -0.08 -0.96 8.18 -39.59 -0.32 -1.29 16 16 C -0.15 -1.69 10.03 -39.52 -0.40 -2.09 16 17 C 0.09 1.01 7.30 -39.42 -0.29 0.73 16 18 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 19 C -0.15 -1.62 10.03 -39.51 -0.40 -2.01 16 20 C -0.09 -0.93 9.67 -39.59 -0.38 -1.32 16 21 C 0.13 2.04 2.31 -67.81 -0.16 1.89 16 22 H 0.09 1.51 7.40 -51.93 -0.38 1.12 16 23 N -0.67 -10.52 3.52 -53.69 -0.19 -10.71 16 24 C 0.48 8.37 7.35 -10.99 -0.08 8.29 16 25 O -0.49 -9.87 16.18 5.56 0.09 -9.78 16 26 C 0.45 6.91 3.43 36.01 0.12 7.03 16 27 F -0.16 -2.58 16.92 2.25 0.04 -2.54 16 28 F -0.17 -2.33 17.30 2.25 0.04 -2.29 16 29 F -0.16 -2.63 17.30 2.25 0.04 -2.60 16 30 C 0.16 3.39 4.91 -3.71 -0.02 3.37 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.06 1.03 7.93 -51.93 -0.41 0.62 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.74 5.46 -51.93 -0.28 0.45 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.13 1.38 5.14 -52.49 -0.27 1.11 16 37 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.13 1.17 7.97 -52.48 -0.42 0.75 16 40 H 0.40 5.75 5.16 -40.82 -0.21 5.54 16 41 H 0.10 2.41 6.22 -51.93 -0.32 2.08 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 359.58 15.07 5.42 5.42 Total: -1.00 -28.58 359.58 -6.81 -35.38 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.37 Total: 3.60 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -3.01 Total: 6.48 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.06 Total: -48.02 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 0.15 Total: -9.16 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.58 -6.81 -35.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096496455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.227 kcal (2) G-P(sol) polarization free energy of solvation -28.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds