Wall clock time and date at job start Tue Mar 31 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86791 * 120.00059 * 2 1 4 4 H 1.48503 * 109.46823 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47465 * 299.99461 * 3 2 1 6 6 H 1.48503 * 109.47429 * 59.99880 * 3 2 1 7 7 C 1.38807 * 119.99584 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99874 * 164.23157 * 7 2 1 9 9 N 1.36940 * 120.00403 * 344.23393 * 7 2 1 10 10 C 1.46924 * 120.63285 * 149.40384 * 9 7 2 11 11 C 1.53201 * 108.77633 * 126.41434 * 10 9 7 12 12 C 1.53036 * 109.30937 * 54.63431 * 11 10 9 13 13 H 1.09000 * 109.45861 * 58.64638 * 12 11 10 14 14 C 1.50701 * 109.45700 * 178.61551 * 12 11 10 15 15 C 1.38243 * 119.97768 * 50.51266 * 14 12 11 16 16 C 1.38197 * 120.02698 * 180.02562 * 15 14 12 17 17 C 1.38455 * 119.97569 * 0.22774 * 16 15 14 18 18 F 1.35097 * 120.02901 * 179.72677 * 17 16 15 19 19 C 1.38465 * 119.94844 * 359.49501 * 17 16 15 20 20 C 1.38197 * 119.96857 * 0.52849 * 19 17 16 21 21 C 1.53040 * 109.53930 * 298.63731 * 12 11 10 22 22 H 1.09003 * 109.49268 * 181.31606 * 21 12 11 23 23 N 1.46497 * 109.49721 * 301.40944 * 21 12 11 24 24 C 1.34772 * 120.00136 * 210.62389 * 23 21 12 25 25 O 1.21281 * 120.00168 * 0.02562 * 24 23 21 26 26 C 1.50702 * 119.99906 * 180.02562 * 24 23 21 27 27 F 1.39904 * 109.47193 * 180.02562 * 26 24 23 28 28 F 1.39899 * 109.47171 * 299.99876 * 26 24 23 29 29 F 1.39902 * 109.47196 * 60.00185 * 26 24 23 30 30 C 1.46927 * 120.62904 * 329.43120 * 9 7 2 31 31 H 0.96998 * 119.99829 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.58865 * 6.63041 * 10 9 7 33 33 H 1.09000 * 109.58989 * 246.20205 * 10 9 7 34 34 H 1.08997 * 109.49658 * 294.68785 * 11 10 9 35 35 H 1.08994 * 109.49657 * 174.59016 * 11 10 9 36 36 H 1.08001 * 119.98488 * 0.02562 * 15 14 12 37 37 H 1.08000 * 120.01117 * 179.97438 * 16 15 14 38 38 H 1.07998 * 120.01640 * 180.25450 * 19 17 16 39 39 H 1.08009 * 119.98414 * 179.75149 * 20 19 17 40 40 H 0.97004 * 119.99654 * 30.63438 * 23 21 12 41 41 H 1.08999 * 109.58597 * 353.36607 * 30 9 7 42 42 H 1.09001 * 109.58724 * 113.65620 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0598 -1.2199 -0.2536 9 7 1.3641 -2.3656 0.3233 10 6 1.7842 -3.6438 -0.2671 11 6 2.0486 -4.6452 0.8618 12 6 0.8084 -4.7420 1.7531 13 1 -0.0463 -5.0552 1.1534 14 6 1.0525 -5.7515 2.8451 15 6 2.2000 -5.6753 3.6122 16 6 2.4252 -6.6008 4.6135 17 6 1.5033 -7.6075 4.8451 18 9 1.7250 -8.5162 5.8199 19 6 0.3515 -7.6795 4.0799 20 6 0.1288 -6.7531 3.0789 21 6 0.5190 -3.3751 2.3778 22 1 -0.3505 -3.4503 3.0307 23 7 1.6800 -2.9380 3.1569 24 6 1.5081 -2.1588 4.2431 25 8 0.3921 -1.8200 4.5758 26 6 2.7025 -1.7087 5.0442 27 9 2.2742 -0.9168 6.1151 28 9 3.3832 -2.8279 5.5355 29 9 3.5589 -0.9639 4.2262 30 6 0.2373 -2.3594 1.2661 31 1 -0.4850 0.8400 -0.0004 32 1 2.6959 -3.4968 -0.8460 33 1 0.9946 -4.0240 -0.9153 34 1 2.8980 -4.3079 1.4557 35 1 2.2678 -5.6241 0.4357 36 1 2.9208 -4.8921 3.4290 37 1 3.3219 -6.5413 5.2124 38 1 -0.3703 -8.4618 4.2623 39 1 -0.7677 -6.8114 2.4792 40 1 2.5726 -3.2092 2.8909 41 1 0.1284 -1.3650 1.6989 42 1 -0.6789 -2.6324 0.7424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096496455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:22 Heat of formation + Delta-G solvation = -193.228855 kcal Electronic energy + Delta-G solvation = -34440.753491 eV Core-core repulsion = 29306.432736 eV Total energy + Delta-G solvation = -5134.320754 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.120 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -51.43906 -49.85477 -48.94891 -48.92988 -41.71008 -40.16991 -38.72171 -35.92174 -34.57649 -32.90799 -32.11396 -31.28337 -30.21138 -28.53225 -26.94268 -24.47609 -24.07629 -23.92000 -22.73152 -22.19014 -20.60663 -20.38073 -19.87069 -19.63514 -18.75971 -18.54413 -17.24781 -17.18773 -17.14260 -16.62813 -16.53131 -16.38801 -16.06028 -15.70624 -15.60661 -15.51463 -15.33088 -15.16664 -15.04670 -15.03276 -14.74620 -14.66157 -14.56306 -14.50196 -14.34782 -13.93980 -13.54997 -13.27324 -13.12400 -12.98086 -12.77552 -12.66047 -12.35548 -12.10054 -11.95718 -11.62798 -11.55996 -11.35170 -11.34269 -10.56479 -10.35857 -9.99879 -9.46534 -8.61106 -7.86551 -5.32467 0.18033 0.32358 0.68972 0.85561 1.42600 1.48166 1.54308 1.95825 2.50333 2.56320 2.63738 3.00689 3.02692 3.30209 3.33971 3.61143 3.70553 3.74788 3.92284 4.00911 4.03829 4.35663 4.38608 4.44077 4.52751 4.67180 4.76141 4.84028 4.98140 5.02294 5.13022 5.15621 5.20327 5.24460 5.32341 5.34335 5.45425 5.61631 5.66455 5.70339 5.95949 5.97668 6.41929 6.58296 7.17076 7.88065 8.38489 9.18793 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.004480 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.961309 B = 6248.971751 C = 7901.982702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.042 4.042 3 Si 0.943 3.057 4 H -0.262 1.262 5 H -0.294 1.294 6 H -0.301 1.301 7 C -0.248 4.248 8 H 0.070 0.930 9 N -0.600 5.600 10 C 0.138 3.862 11 C -0.116 4.116 12 C -0.039 4.039 13 H 0.108 0.892 14 C -0.085 4.085 15 C -0.089 4.089 16 C -0.154 4.154 17 C 0.073 3.927 18 F -0.151 7.151 19 C -0.151 4.151 20 C -0.085 4.085 21 C 0.138 3.862 22 H 0.086 0.914 23 N -0.656 5.656 24 C 0.478 3.522 25 O -0.521 6.521 26 C 0.457 3.543 27 F -0.162 7.162 28 F -0.156 7.156 29 F -0.165 7.165 30 C 0.171 3.829 31 H 0.246 0.754 32 H 0.060 0.940 33 H 0.023 0.977 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.414 0.586 41 H 0.048 0.952 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.086 -15.419 7.505 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.773 3.227 4 H -0.186 1.186 5 H -0.221 1.221 6 H -0.229 1.229 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.324 5.324 10 C 0.013 3.987 11 C -0.155 4.155 12 C -0.058 4.058 13 H 0.126 0.874 14 C -0.085 4.085 15 C -0.107 4.107 16 C -0.173 4.173 17 C 0.054 3.946 18 F -0.129 7.129 19 C -0.170 4.170 20 C -0.103 4.103 21 C 0.033 3.967 22 H 0.104 0.896 23 N -0.308 5.308 24 C 0.256 3.744 25 O -0.397 6.397 26 C 0.399 3.601 27 F -0.143 7.143 28 F -0.138 7.138 29 F -0.147 7.147 30 C 0.044 3.956 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.148 0.852 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.172 0.828 40 H 0.253 0.747 41 H 0.066 0.934 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 4.248 -15.095 7.733 17.484 hybrid contribution 0.752 1.362 0.207 1.569 sum 5.000 -13.733 7.940 16.633 Atomic orbital electron populations 1.70117 1.06457 1.25391 1.55589 1.25658 0.95736 1.00943 1.01450 0.85562 0.79369 0.81414 0.76366 1.18570 1.22098 1.22861 1.19414 0.92339 0.85439 1.40713 0.91240 1.44170 1.36855 1.03157 1.48168 1.21148 0.98140 0.85488 0.93950 1.22029 0.96038 1.00361 0.97098 1.20323 1.01199 0.90007 0.94240 0.87431 1.19963 0.94958 0.96383 0.97240 1.20986 0.97342 0.97927 0.94413 1.21276 1.00477 0.95133 1.00370 1.17955 0.97093 0.89989 0.89573 1.91466 1.94965 1.65654 1.60856 1.21349 0.96951 1.01864 0.96806 1.21187 0.99404 0.92872 0.96792 1.21827 0.87308 0.94798 0.92787 0.89616 1.45878 1.12609 1.47688 1.24626 1.20356 0.89013 0.81557 0.83455 1.90826 1.24140 1.55284 1.69479 1.20109 0.83984 0.76593 0.79441 1.93231 1.89809 1.74604 1.56703 1.93258 1.81113 1.50981 1.88433 1.93299 1.71887 1.77395 1.72078 1.20882 0.89274 0.96834 0.88567 0.94494 0.92164 0.95880 0.91921 0.88841 0.85210 0.83737 0.83060 0.82843 0.74677 0.93371 0.96310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.24 11.31 21.65 0.24 -53.00 16 2 C -0.04 -2.23 4.92 84.86 0.42 -1.81 16 3 Si 0.94 44.00 29.58 68.60 2.03 46.03 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 7 C -0.25 -12.32 9.56 84.03 0.80 -11.52 16 8 H 0.07 3.35 7.88 -2.91 -0.02 3.33 16 9 N -0.60 -25.58 2.90 -699.08 -2.03 -27.61 16 10 C 0.14 4.48 6.52 86.37 0.56 5.04 16 11 C -0.12 -2.71 4.86 30.67 0.15 -2.56 16 12 C -0.04 -0.91 2.21 -11.51 -0.03 -0.94 16 13 H 0.11 2.35 7.90 -2.39 -0.02 2.33 16 14 C -0.09 -1.74 4.78 -19.86 -0.10 -1.84 16 15 C -0.09 -1.79 8.18 22.26 0.18 -1.61 16 16 C -0.15 -3.08 10.03 22.31 0.22 -2.85 16 17 C 0.07 1.53 7.30 22.38 0.16 1.69 16 18 F -0.15 -3.40 17.27 44.97 0.78 -2.62 16 19 C -0.15 -2.75 10.03 22.31 0.22 -2.53 16 20 C -0.08 -1.52 9.67 22.26 0.22 -1.31 16 21 C 0.14 4.36 2.31 45.07 0.10 4.47 16 22 H 0.09 2.84 7.40 -2.39 -0.02 2.82 16 23 N -0.66 -19.98 3.52 -442.17 -1.56 -21.54 16 24 C 0.48 16.34 7.35 87.66 0.64 16.98 16 25 O -0.52 -21.43 16.18 -3.03 -0.05 -21.48 16 26 C 0.46 13.64 3.43 71.24 0.24 13.89 16 27 F -0.16 -5.15 16.92 44.97 0.76 -4.39 16 28 F -0.16 -3.82 17.30 44.97 0.78 -3.04 16 29 F -0.17 -5.15 17.30 44.97 0.78 -4.37 16 30 C 0.17 7.31 4.91 86.36 0.42 7.73 16 31 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 32 H 0.06 1.95 7.93 -2.39 -0.02 1.93 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.06 1.41 5.46 -2.39 -0.01 1.40 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.13 2.44 5.14 -2.91 -0.01 2.43 16 37 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.15 2.10 7.97 -2.91 -0.02 2.07 16 40 H 0.41 10.93 5.16 -92.71 -0.48 10.45 16 41 H 0.05 2.53 6.22 -2.39 -0.01 2.51 16 42 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -63.15 359.58 6.59 -56.55 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.62 Total: 12.61 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 4.24 Total: 22.84 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -3.34 Total: -102.15 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.05 Total: -21.48 kcal Atomic # 9 Polarization: -17.51 SS G_CDS: 3.09 Total: -14.42 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -63.15 6.59 -56.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096496455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.675 kcal (2) G-P(sol) polarization free energy of solvation -63.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds