Wall clock time and date at job start Tue Mar 31 2020 07:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 119.99950 * 2 1 4 4 H 1.07991 * 119.99853 * 202.32156 * 3 2 1 5 5 C 1.38815 * 120.00003 * 22.31994 * 3 2 1 6 6 N 1.31621 * 119.99697 * 11.15080 * 5 3 2 7 7 Si 1.86797 * 120.00085 * 191.15182 * 5 3 2 8 8 H 1.48493 * 109.46923 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46895 * 120.00293 * 7 5 3 10 10 H 1.48499 * 109.47069 * 239.99960 * 7 5 3 11 11 S 1.65594 * 119.99692 * 180.02562 * 2 1 3 12 12 O 1.42095 * 106.40584 * 23.54157 * 11 2 1 13 13 O 1.42105 * 106.39861 * 156.46176 * 11 2 1 14 14 C 1.76202 * 107.21815 * 269.99934 * 11 2 1 15 15 C 1.37971 * 119.87295 * 115.00452 * 14 11 2 16 16 C 1.38322 * 120.33595 * 180.02562 * 15 14 11 17 17 Br 1.89101 * 120.12521 * 180.20059 * 16 15 14 18 18 C 1.38468 * 119.74978 * 0.18517 * 16 15 14 19 19 C 1.37698 * 119.97013 * 359.92687 * 18 16 15 20 20 C 1.38925 * 120.79241 * 359.45693 * 19 18 16 21 21 O 1.36146 * 111.22160 * 180.88398 * 20 19 18 22 22 C 1.43775 * 109.28593 * 341.17719 * 21 20 19 23 23 C 1.51651 * 132.16901 * 179.44190 * 19 18 16 24 24 H 1.08993 * 109.47325 * 274.21873 * 1 2 3 25 25 H 1.09005 * 109.47216 * 34.22542 * 1 2 3 26 26 H 1.09005 * 109.47131 * 154.22161 * 1 2 3 27 27 H 0.97000 * 119.99857 * 179.97438 * 6 5 3 28 28 H 1.07992 * 119.83022 * 0.02562 * 15 14 11 29 29 H 1.08003 * 120.01395 * 179.90459 * 18 16 15 30 30 H 1.09004 * 110.74424 * 269.29166 * 22 21 20 31 31 H 1.08999 * 110.90843 * 146.01843 * 22 21 20 32 32 H 1.09003 * 110.93273 * 313.64539 * 23 19 18 33 33 H 1.08996 * 110.93850 * 77.28923 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2209 -0.3552 5 6 1.5336 2.3431 0.4566 6 7 0.3818 2.2696 1.0893 7 14 2.3392 4.0044 0.1729 8 1 3.6185 3.8159 -0.5572 9 1 1.4328 4.8632 -0.6309 10 1 2.6064 4.6547 1.4809 11 16 2.2929 -1.4341 -0.0006 12 8 1.4113 -2.4062 -0.5455 13 8 3.5759 -1.1565 -0.5449 14 6 2.5537 -1.8866 1.6822 15 6 1.9579 -3.0234 2.1884 16 6 2.1557 -3.3873 3.5082 17 35 1.3407 -4.9497 4.1943 18 6 2.9529 -2.6033 4.3250 19 6 3.5462 -1.4673 3.8216 20 6 3.3652 -1.0987 2.4944 21 8 4.0518 0.0397 2.2010 22 6 4.3741 0.7278 3.4215 23 6 4.4439 -0.4216 4.4546 24 1 -0.3633 0.0756 1.0248 25 1 -0.3634 0.8497 -0.5780 26 1 -0.3634 -0.9254 -0.4469 27 1 -0.0485 3.0781 1.4087 28 1 1.3340 -3.6322 1.5510 29 1 3.1090 -2.8826 5.3566 30 1 3.5884 1.4362 3.6844 31 1 5.3364 1.2333 3.3407 32 1 4.0497 -0.1026 5.4195 33 1 5.4634 -0.7934 4.5562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096502819.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:23 Heat of formation + Delta-G solvation = -59.293489 kcal Electronic energy + Delta-G solvation = -23134.142742 eV Core-core repulsion = 19527.454390 eV Total energy + Delta-G solvation = -3606.688351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 360.982 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.83187 -37.29509 -35.74539 -35.67968 -34.39285 -32.57853 -31.60093 -31.50118 -29.23835 -28.46122 -26.46318 -23.61203 -23.37811 -22.22959 -21.49028 -18.46578 -17.47912 -17.08823 -16.80258 -16.12692 -16.10285 -15.73402 -14.69489 -14.62443 -14.30040 -13.53979 -13.34932 -13.12784 -13.01701 -12.75981 -12.71961 -11.94471 -11.83882 -11.65858 -11.42762 -11.30989 -11.25309 -11.07626 -11.04357 -10.69085 -10.60634 -10.27522 -10.22160 -10.13836 -10.02845 -9.71178 -9.31352 -8.94123 -8.13286 -7.86823 -6.58748 -4.02843 1.16533 1.37759 1.71197 1.82420 3.05395 3.12452 3.20069 3.42651 3.69230 3.95629 4.43770 4.45782 4.72864 4.75798 4.97552 5.03690 5.14551 5.28374 5.49105 5.58754 5.69435 5.83542 5.89858 5.96714 6.19835 6.30733 6.36377 6.46131 6.66421 6.85916 7.09732 7.24579 7.32953 7.42124 8.27944 8.62240 9.10198 10.36912 Molecular weight = 360.98amu Principal moments of inertia in cm(-1) A = 0.014850 B = 0.004604 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.077611 B = 6079.819787 C = 6864.318732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.801 5.801 3 C -0.223 4.223 4 H 0.119 0.881 5 C 0.029 3.971 6 N -0.836 5.836 7 Si 0.924 3.076 8 H -0.260 1.260 9 H -0.276 1.276 10 H -0.278 1.278 11 S 2.527 3.473 12 O -1.002 7.002 13 O -0.975 6.975 14 C -0.672 4.672 15 C 0.027 3.973 16 C -0.148 4.148 17 Br -0.059 7.059 18 C -0.013 4.013 19 C -0.202 4.202 20 C 0.228 3.772 21 O -0.268 6.268 22 C 0.048 3.952 23 C -0.105 4.105 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.273 0.727 28 H 0.149 0.851 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.463 -4.580 9.833 11.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.625 5.625 3 C -0.371 4.371 4 H 0.136 0.864 5 C -0.183 4.183 6 N -0.477 5.477 7 Si 0.750 3.250 8 H -0.184 1.184 9 H -0.202 1.202 10 H -0.204 1.204 11 S 2.623 3.377 12 O -0.992 6.992 13 O -0.965 6.965 14 C -0.750 4.750 15 C 0.006 3.994 16 C -0.228 4.228 17 Br 0.025 6.975 18 C -0.033 4.033 19 C -0.204 4.204 20 C 0.178 3.822 21 O -0.179 6.179 22 C -0.027 4.027 23 C -0.142 4.142 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.167 0.833 29 H 0.148 0.852 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.406 -5.764 9.305 11.207 hybrid contribution 0.450 1.144 1.141 1.677 sum 2.856 -4.620 10.446 11.774 Atomic orbital electron populations 1.21340 0.79092 1.00069 1.01955 1.54206 1.13205 1.18774 1.76298 1.20138 1.00861 0.82807 1.33337 0.86384 1.25757 0.96501 1.00979 0.95019 1.70129 1.15319 1.30051 1.32196 0.85862 0.79953 0.80678 0.78540 1.18378 1.20193 1.20390 1.11975 0.74064 0.74588 0.77090 1.93319 1.65409 1.61957 1.78500 1.93376 1.41248 1.84378 1.77491 1.31561 1.07095 1.03461 1.32838 1.20643 0.93207 0.92727 0.92832 1.21530 1.07346 0.97184 0.96762 1.96602 1.80946 1.33452 1.86467 1.20134 0.92881 0.91530 0.98781 1.20797 1.04493 0.99295 0.95856 1.18926 0.85941 0.85451 0.91836 1.87094 1.67263 1.32380 1.31127 1.23922 1.02685 0.94603 0.81529 1.21775 0.99411 0.93277 0.99719 0.92946 0.90605 0.93657 0.91613 0.83320 0.85178 0.89779 0.87368 0.89111 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.74 8.92 59.85 0.53 3.27 16 2 N -0.80 -19.43 3.31 -66.68 -0.22 -19.65 16 3 C -0.22 -5.47 8.98 -15.06 -0.14 -5.60 16 4 H 0.12 2.97 7.16 -52.49 -0.38 2.59 16 5 C 0.03 0.68 5.13 -17.43 -0.09 0.59 16 6 N -0.84 -19.72 10.57 55.49 0.59 -19.13 16 7 Si 0.92 18.11 29.57 -169.99 -5.03 13.08 16 8 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 9 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 10 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 11 S 2.53 61.36 5.55 -107.50 -0.60 60.76 16 12 O -1.00 -25.05 15.50 -57.17 -0.89 -25.94 16 13 O -0.98 -25.99 16.69 -57.17 -0.95 -26.94 16 14 C -0.67 -14.69 5.93 -39.31 -0.23 -14.92 16 15 C 0.03 0.52 9.27 -39.65 -0.37 0.15 16 16 C -0.15 -2.53 6.23 -39.47 -0.25 -2.78 16 17 Br -0.06 -0.84 33.71 -68.01 -2.29 -3.14 16 18 C -0.01 -0.21 9.78 -39.69 -0.39 -0.60 16 19 C -0.20 -3.42 6.27 -104.10 -0.65 -4.07 16 20 C 0.23 4.68 6.69 -38.95 -0.26 4.42 16 21 O -0.27 -5.44 10.53 -20.21 -0.21 -5.65 16 22 C 0.05 0.70 8.01 38.05 0.30 1.00 16 23 C -0.10 -1.34 7.12 -26.52 -0.19 -1.53 16 24 H 0.05 1.19 7.42 -51.93 -0.39 0.81 16 25 H 0.08 1.70 7.18 -51.93 -0.37 1.33 16 26 H 0.04 0.96 6.93 -51.93 -0.36 0.60 16 27 H 0.27 6.02 8.31 -40.82 -0.34 5.69 16 28 H 0.15 2.83 7.30 -52.49 -0.38 2.45 16 29 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 314.00 15.07 4.73 4.73 Total: -1.00 -29.46 314.00 -9.72 -39.18 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -3.13 Total: 2.74 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -1.72 Total: -20.06 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.37 Total: -38.77 kcal Atomic # 8 Polarization: -56.48 SS G_CDS: -2.05 Total: -58.53 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: 61.36 SS G_CDS: -0.60 Total: 60.76 kcal Atomic # 35 Polarization: -0.84 SS G_CDS: -2.29 Total: -3.14 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.46 -9.72 -39.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096502819.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.117 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds