Wall clock time and date at job start Tue Mar 31 2020 07:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 119.99950 * 2 1 4 4 H 1.07991 * 119.99853 * 202.32156 * 3 2 1 5 5 C 1.38815 * 120.00003 * 22.31994 * 3 2 1 6 6 N 1.31621 * 119.99697 * 11.15080 * 5 3 2 7 7 Si 1.86797 * 120.00085 * 191.15182 * 5 3 2 8 8 H 1.48493 * 109.46923 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46895 * 120.00293 * 7 5 3 10 10 H 1.48499 * 109.47069 * 239.99960 * 7 5 3 11 11 S 1.65594 * 119.99692 * 180.02562 * 2 1 3 12 12 O 1.42095 * 106.40584 * 23.54157 * 11 2 1 13 13 O 1.42105 * 106.39861 * 156.46176 * 11 2 1 14 14 C 1.76202 * 107.21815 * 269.99934 * 11 2 1 15 15 C 1.37971 * 119.87295 * 115.00452 * 14 11 2 16 16 C 1.38322 * 120.33595 * 180.02562 * 15 14 11 17 17 Br 1.89101 * 120.12521 * 180.20059 * 16 15 14 18 18 C 1.38468 * 119.74978 * 0.18517 * 16 15 14 19 19 C 1.37698 * 119.97013 * 359.92687 * 18 16 15 20 20 C 1.38925 * 120.79241 * 359.45693 * 19 18 16 21 21 O 1.36146 * 111.22160 * 180.88398 * 20 19 18 22 22 C 1.43775 * 109.28593 * 341.17719 * 21 20 19 23 23 C 1.51651 * 132.16901 * 179.44190 * 19 18 16 24 24 H 1.08993 * 109.47325 * 274.21873 * 1 2 3 25 25 H 1.09005 * 109.47216 * 34.22542 * 1 2 3 26 26 H 1.09005 * 109.47131 * 154.22161 * 1 2 3 27 27 H 0.97000 * 119.99857 * 179.97438 * 6 5 3 28 28 H 1.07992 * 119.83022 * 0.02562 * 15 14 11 29 29 H 1.08003 * 120.01395 * 179.90459 * 18 16 15 30 30 H 1.09004 * 110.74424 * 269.29166 * 22 21 20 31 31 H 1.08999 * 110.90843 * 146.01843 * 22 21 20 32 32 H 1.09003 * 110.93273 * 313.64539 * 23 19 18 33 33 H 1.08996 * 110.93850 * 77.28923 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2209 -0.3552 5 6 1.5336 2.3431 0.4566 6 7 0.3818 2.2696 1.0893 7 14 2.3392 4.0044 0.1729 8 1 3.6185 3.8159 -0.5572 9 1 1.4328 4.8632 -0.6309 10 1 2.6064 4.6547 1.4809 11 16 2.2929 -1.4341 -0.0006 12 8 1.4113 -2.4062 -0.5455 13 8 3.5759 -1.1565 -0.5449 14 6 2.5537 -1.8866 1.6822 15 6 1.9579 -3.0234 2.1884 16 6 2.1557 -3.3873 3.5082 17 35 1.3407 -4.9497 4.1943 18 6 2.9529 -2.6033 4.3250 19 6 3.5462 -1.4673 3.8216 20 6 3.3652 -1.0987 2.4944 21 8 4.0518 0.0397 2.2010 22 6 4.3741 0.7278 3.4215 23 6 4.4439 -0.4216 4.4546 24 1 -0.3633 0.0756 1.0248 25 1 -0.3634 0.8497 -0.5780 26 1 -0.3634 -0.9254 -0.4469 27 1 -0.0485 3.0781 1.4087 28 1 1.3340 -3.6322 1.5510 29 1 3.1090 -2.8826 5.3566 30 1 3.5884 1.4362 3.6844 31 1 5.3364 1.2333 3.3407 32 1 4.0497 -0.1026 5.4195 33 1 5.4634 -0.7934 4.5562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096502819.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:22 Heat of formation + Delta-G solvation = -78.645937 kcal Electronic energy + Delta-G solvation = -23134.981927 eV Core-core repulsion = 19527.454390 eV Total energy + Delta-G solvation = -3607.527536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 360.982 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.16413 -38.69052 -37.71656 -37.50277 -36.40591 -33.85436 -33.32392 -32.92521 -30.49353 -29.79408 -28.29784 -25.38371 -24.75836 -23.57123 -22.81984 -20.29419 -19.10608 -18.74163 -18.39788 -17.81429 -17.57104 -17.08798 -16.39723 -16.20065 -15.95895 -15.11272 -14.85937 -14.59701 -14.48444 -14.23629 -13.93620 -13.67106 -13.31463 -13.18509 -13.01254 -12.90873 -12.71869 -12.68480 -12.55133 -12.43072 -12.32802 -12.12242 -11.89212 -11.60848 -11.31613 -11.26228 -11.06299 -10.32521 -9.94463 -9.22617 -8.35118 -5.89630 -0.30131 -0.05667 -0.02295 0.48182 1.49077 1.53181 1.65547 2.05318 2.30635 2.35113 2.65590 2.94923 3.16924 3.30266 3.57604 3.75067 3.84534 4.06737 4.16014 4.23261 4.45076 4.56333 4.69732 4.74613 4.75701 4.85451 4.97278 5.01883 5.02873 5.24034 5.31964 5.40693 5.59406 5.97753 6.44669 6.79875 7.27799 8.62130 Molecular weight = 360.98amu Principal moments of inertia in cm(-1) A = 0.014850 B = 0.004604 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.077611 B = 6079.819787 C = 6864.318732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.815 5.815 3 C -0.250 4.250 4 H 0.102 0.898 5 C 0.003 3.997 6 N -0.857 5.857 7 Si 0.983 3.017 8 H -0.264 1.264 9 H -0.271 1.271 10 H -0.265 1.265 11 S 2.543 3.457 12 O -1.019 7.019 13 O -1.008 7.008 14 C -0.704 4.704 15 C 0.009 3.991 16 C -0.151 4.151 17 Br -0.028 7.028 18 C -0.002 4.002 19 C -0.197 4.197 20 C 0.200 3.800 21 O -0.302 6.302 22 C 0.034 3.966 23 C -0.092 4.092 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.280 0.720 28 H 0.144 0.856 29 H 0.172 0.828 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.124 0.876 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.240 -4.309 12.676 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.640 5.640 3 C -0.398 4.398 4 H 0.120 0.880 5 C -0.207 4.207 6 N -0.498 5.498 7 Si 0.805 3.195 8 H -0.188 1.188 9 H -0.196 1.196 10 H -0.190 1.190 11 S 2.643 3.357 12 O -1.009 7.009 13 O -0.998 6.998 14 C -0.786 4.786 15 C -0.012 4.012 16 C -0.231 4.231 17 Br 0.057 6.943 18 C -0.022 4.022 19 C -0.200 4.200 20 C 0.151 3.849 21 O -0.214 6.214 22 C -0.040 4.040 23 C -0.129 4.129 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.161 0.839 29 H 0.190 0.810 30 H 0.098 0.902 31 H 0.157 0.843 32 H 0.142 0.858 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.159 -5.468 12.116 13.663 hybrid contribution 0.217 0.898 0.376 0.997 sum 3.376 -4.570 12.491 13.723 Atomic orbital electron populations 1.21249 0.78521 1.00197 1.01485 1.54044 1.13516 1.18584 1.77827 1.20053 1.00618 0.83597 1.35487 0.88044 1.26380 0.96768 1.03321 0.94196 1.70179 1.15988 1.31141 1.32449 0.85013 0.78851 0.76776 0.78850 1.18831 1.19636 1.19024 1.10785 0.73224 0.74293 0.77385 1.93281 1.65674 1.62454 1.79493 1.93322 1.42643 1.84928 1.78881 1.31048 1.10273 1.05816 1.31501 1.20662 0.93663 0.92446 0.94381 1.21745 1.07106 0.98340 0.95932 1.96626 1.80515 1.31509 1.85663 1.20620 0.90946 0.90324 1.00305 1.21322 1.04173 0.99973 0.94501 1.19234 0.86365 0.85908 0.93442 1.87053 1.67245 1.32766 1.34371 1.24328 1.04070 0.95159 0.80469 1.21898 1.00078 0.90857 1.00019 0.93588 0.90943 0.92979 0.91015 0.83877 0.81035 0.90207 0.84334 0.85772 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.13 8.92 127.77 1.14 7.27 16 2 N -0.81 -41.14 3.31 -364.89 -1.21 -42.34 16 3 C -0.25 -12.71 8.98 84.03 0.75 -11.96 16 4 H 0.10 5.37 7.16 -2.92 -0.02 5.35 16 5 C 0.00 0.14 5.13 84.86 0.44 0.58 16 6 N -0.86 -40.71 10.57 21.65 0.23 -40.48 16 7 Si 0.98 36.97 29.57 68.60 2.03 39.00 16 8 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 9 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 10 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 11 S 2.54 128.85 5.55 -56.49 -0.31 128.54 16 12 O -1.02 -52.98 15.50 -128.00 -1.98 -54.97 16 13 O -1.01 -56.31 16.69 -128.00 -2.14 -58.45 16 14 C -0.70 -31.47 5.93 22.45 0.13 -31.34 16 15 C 0.01 0.37 9.27 22.23 0.21 0.58 16 16 C -0.15 -4.88 6.23 22.34 0.14 -4.75 16 17 Br -0.03 -0.73 33.71 -20.37 -0.69 -1.42 16 18 C 0.00 -0.07 9.78 22.20 0.22 0.15 16 19 C -0.20 -6.17 6.27 -19.52 -0.12 -6.29 16 20 C 0.20 8.19 6.69 22.68 0.15 8.35 16 21 O -0.30 -12.33 10.53 -95.21 -1.00 -13.33 16 22 C 0.03 0.92 8.01 72.56 0.58 1.50 16 23 C -0.09 -1.99 7.12 30.73 0.22 -1.77 16 24 H 0.05 2.16 7.42 -2.39 -0.02 2.14 16 25 H 0.07 3.36 7.18 -2.38 -0.02 3.35 16 26 H 0.05 2.29 6.93 -2.38 -0.02 2.27 16 27 H 0.28 12.25 8.31 -92.71 -0.77 11.48 16 28 H 0.14 5.61 7.30 -2.91 -0.02 5.59 16 29 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -65.97 314.00 -0.06 -66.03 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.16 Total: 15.12 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 3.85 Total: -37.69 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -0.98 Total: -82.83 kcal Atomic # 8 Polarization: -121.62 SS G_CDS: -5.12 Total: -126.75 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Atomic # 16 Polarization: 128.85 SS G_CDS: -0.31 Total: 128.54 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -0.69 Total: -1.42 kcal Total: -65.97 -0.06 -66.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096502819.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.614 kcal (2) G-P(sol) polarization free energy of solvation -65.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds