Wall clock time and date at job start Tue Mar 31 2020 05:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35953 * 117.00470 * 2 1 4 4 C 1.38072 * 119.99746 * 359.97438 * 3 2 1 5 5 C 1.39984 * 119.83887 * 179.97438 * 4 3 2 6 6 C 1.46963 * 120.08162 * 179.97438 * 5 4 3 7 7 C 1.35018 * 120.00312 * 136.66193 * 6 5 4 8 8 C 1.46260 * 120.00071 * 348.69723 * 7 6 5 9 9 O 1.21716 * 119.99874 * 353.20752 * 8 7 6 10 10 N 1.34771 * 119.99930 * 173.48885 * 8 7 6 11 11 C 1.46505 * 119.99931 * 179.72454 * 10 8 7 12 12 C 1.52998 * 109.47286 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47429 * 295.00178 * 12 11 10 14 14 C 1.52998 * 109.47429 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47010 * 59.99475 * 14 13 12 16 16 C 1.52993 * 109.47302 * 300.00162 * 15 14 13 17 17 C 1.52996 * 109.47315 * 174.99516 * 12 11 10 18 18 C 1.40029 * 119.84125 * 0.25459 * 5 4 3 19 19 C 1.37646 * 119.99919 * 359.48447 * 18 5 4 20 20 C 1.39054 * 120.16312 * 0.51785 * 19 18 5 21 21 O 1.35615 * 119.92438 * 179.76242 * 20 19 18 22 22 C 1.34760 * 116.99919 * 354.29976 * 21 20 19 23 23 H 1.08001 * 120.00028 * 5.05983 * 22 21 20 24 24 C 1.38706 * 119.99862 * 185.07124 * 22 21 20 25 25 N 1.31523 * 119.99927 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00231 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.46893 * 90.00618 * 26 24 22 28 28 H 1.48497 * 109.47294 * 210.00767 * 26 24 22 29 29 H 1.48496 * 109.47185 * 330.00676 * 26 24 22 30 30 H 1.09006 * 109.46460 * 59.99940 * 1 2 3 31 31 H 1.08992 * 109.47418 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47136 * 300.00724 * 1 2 3 33 33 H 1.07998 * 120.08300 * 359.95438 * 4 3 2 34 34 H 1.08004 * 119.99771 * 316.66778 * 6 5 4 35 35 H 1.08006 * 120.00046 * 168.69253 * 7 6 5 36 36 H 0.96998 * 120.00195 * 359.71778 * 10 8 7 37 37 H 1.09000 * 109.46574 * 299.99588 * 11 10 8 38 38 H 1.08998 * 109.47082 * 59.99554 * 11 10 8 39 39 H 1.09005 * 109.46896 * 55.00301 * 12 11 10 40 40 H 1.09000 * 109.46785 * 299.99693 * 13 12 11 41 41 H 1.08999 * 109.47085 * 59.99227 * 13 12 11 42 42 H 1.09000 * 109.46886 * 299.99631 * 14 13 12 43 43 H 1.08999 * 109.47523 * 179.97438 * 14 13 12 44 44 H 1.09005 * 109.47233 * 180.02562 * 15 14 13 45 45 H 1.09000 * 109.47169 * 60.00328 * 15 14 13 46 46 H 1.09005 * 109.47542 * 299.99926 * 16 15 14 47 47 H 1.08997 * 109.47351 * 179.97438 * 16 15 14 48 48 H 1.08999 * 109.47056 * 300.00569 * 17 12 11 49 49 H 1.09000 * 109.46904 * 60.00304 * 17 12 11 50 50 H 1.08004 * 119.99970 * 179.74705 * 18 5 4 51 51 H 1.08001 * 119.92378 * 180.23295 * 19 18 5 52 52 H 0.96998 * 120.00194 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2943 2.3693 -0.0005 5 6 1.9334 3.6147 0.0000 6 6 1.1383 4.8507 -0.0011 7 6 1.4872 5.8787 0.8016 8 6 2.4941 5.6833 1.8443 9 8 2.9271 4.5686 2.0708 10 7 2.9383 6.7367 2.5580 11 6 3.9424 6.5400 3.6065 12 6 4.2706 7.8853 4.2572 13 6 4.9347 8.8014 3.2275 14 6 5.2635 10.1465 3.8784 15 6 6.2172 9.9246 5.0540 16 6 5.5530 9.0085 6.0837 17 6 5.2240 7.6640 5.4331 18 6 3.3322 3.6802 -0.0043 19 6 4.0753 2.5216 0.0017 20 6 3.4406 1.2844 0.0011 21 8 4.1776 0.1460 0.0021 22 6 5.5132 0.2817 -0.1156 23 1 5.9574 1.2661 -0.1230 24 6 6.3174 -0.8429 -0.2276 25 7 7.6209 -0.7105 -0.3420 26 14 5.5491 -2.5456 -0.2145 27 1 5.2176 -2.9497 -1.6045 28 1 6.5092 -3.5174 0.3679 29 1 4.3100 -2.5233 0.6035 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8899 33 1 0.2158 2.3144 -0.0017 34 1 0.2747 4.9366 -0.6440 35 1 1.0229 6.8455 0.6737 36 1 2.5932 7.6250 2.3775 37 1 3.5512 5.8571 4.3606 38 1 4.8471 6.1183 3.1687 39 1 3.3518 8.3487 4.6168 40 1 5.8535 8.3380 2.8680 41 1 4.2554 8.9590 2.3898 42 1 4.3449 10.6101 4.2382 43 1 5.7370 10.7990 3.1449 44 1 6.4511 10.8828 5.5180 45 1 7.1357 9.4609 4.6942 46 1 4.6345 9.4721 6.4436 47 1 6.2326 8.8500 6.9210 48 1 4.7508 7.0113 6.1667 49 1 6.1428 7.2006 5.0737 50 1 3.8279 4.6397 -0.0080 51 1 5.1541 2.5735 0.0021 52 1 8.1833 -1.4969 -0.4199 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096610814.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:23 Heat of formation + Delta-G solvation = -66.608801 kcal Electronic energy + Delta-G solvation = -31926.918388 eV Core-core repulsion = 27664.664342 eV Total energy + Delta-G solvation = -4262.254046 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.193 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.01670 -39.46961 -38.67245 -37.61038 -36.31729 -34.66272 -32.95386 -32.25450 -31.45535 -30.99330 -29.51902 -28.70823 -26.70810 -26.03844 -25.09169 -23.22951 -22.80486 -21.59364 -21.40619 -20.89141 -20.10554 -19.19994 -17.97201 -17.74639 -16.69106 -16.32368 -15.78583 -15.66302 -15.30356 -15.17128 -15.03515 -14.55339 -14.44586 -14.29301 -14.18803 -13.84351 -13.67385 -13.57275 -13.46620 -13.09636 -12.90938 -12.58355 -12.49107 -12.34798 -12.19979 -12.09426 -11.95993 -11.50764 -11.45733 -11.42228 -11.27599 -11.02295 -10.79618 -10.75516 -10.67467 -10.47298 -10.42112 -10.33921 -10.14885 -9.50859 -9.32366 -9.14245 -8.90286 -8.69402 -7.77128 -6.74208 -6.37562 -3.97829 1.16258 2.27711 2.60492 3.29267 3.33150 3.36549 3.52650 3.63506 3.99259 4.32205 4.33173 4.41511 4.43541 4.59006 4.83929 4.84441 4.93455 4.96428 5.09712 5.11541 5.15572 5.16192 5.19970 5.21753 5.33029 5.44967 5.51758 5.52976 5.54504 5.62671 5.63998 5.71272 5.75062 5.80545 5.83912 5.85613 5.87018 5.90701 5.97319 6.03664 6.15200 6.19732 6.26242 6.40778 6.50987 6.57108 6.65172 6.99450 7.13247 7.39663 7.59697 7.69115 7.73076 8.01258 8.22677 8.55924 8.97891 9.63237 10.69472 Molecular weight = 359.19amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.002433 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.813662 B =11506.254509 C =13523.398258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.311 6.311 3 C 0.038 3.962 4 C -0.136 4.136 5 C -0.148 4.148 6 C 0.019 3.981 7 C -0.256 4.256 8 C 0.536 3.464 9 O -0.511 6.511 10 N -0.734 5.734 11 C 0.124 3.876 12 C -0.096 4.096 13 C -0.116 4.116 14 C -0.119 4.119 15 C -0.121 4.121 16 C -0.118 4.118 17 C -0.114 4.114 18 C -0.009 4.009 19 C -0.208 4.208 20 C 0.158 3.842 21 O -0.200 6.200 22 C -0.384 4.384 23 H 0.108 0.892 24 C 0.064 3.936 25 N -0.877 5.877 26 Si 0.904 3.096 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.255 1.255 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.394 0.606 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.102 0.898 51 H 0.137 0.863 52 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.957 21.115 7.115 24.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.225 6.225 3 C -0.007 4.007 4 C -0.155 4.155 5 C -0.149 4.149 6 C -0.001 4.001 7 C -0.278 4.278 8 C 0.325 3.675 9 O -0.387 6.387 10 N -0.388 5.388 11 C 0.001 3.999 12 C -0.115 4.115 13 C -0.153 4.153 14 C -0.156 4.156 15 C -0.159 4.159 16 C -0.155 4.155 17 C -0.152 4.152 18 C -0.028 4.028 19 C -0.227 4.227 20 C 0.105 3.895 21 O -0.104 6.104 22 C -0.459 4.459 23 H 0.125 0.875 24 C -0.139 4.139 25 N -0.514 5.514 26 Si 0.729 3.271 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.179 1.179 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.228 0.772 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.120 0.880 51 H 0.155 0.845 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.359 19.726 7.296 23.445 hybrid contribution -0.521 0.124 0.003 0.536 sum -10.880 19.850 7.300 23.784 Atomic orbital electron populations 1.22862 0.80436 1.02747 1.00321 1.86158 1.19410 1.26687 1.90275 1.17920 0.89219 0.84369 1.09150 1.20679 0.98055 0.90904 1.05894 1.18096 0.92922 0.91296 1.12570 1.22287 0.94204 0.91437 0.92136 1.22666 1.04537 1.00082 1.00467 1.18486 0.82011 0.84486 0.82531 1.91009 1.57170 1.22994 1.67505 1.45986 1.44113 1.10450 1.38217 1.21336 0.92110 0.96430 0.90064 1.21387 0.99119 0.95102 0.95911 1.21614 1.00980 0.95268 0.97473 1.21530 0.99478 0.97118 0.97522 1.21554 0.98766 0.99392 0.96187 1.21503 1.00561 0.95599 0.97868 1.21504 0.99552 0.97354 0.96776 1.20548 0.91903 0.96714 0.93591 1.20848 1.00819 0.90640 1.10437 1.18547 0.87650 0.86916 0.96379 1.83580 1.20204 1.27469 1.79133 1.20851 0.77419 0.96976 1.50678 0.87514 1.24467 0.94522 0.99444 0.95515 1.69636 1.03092 1.31574 1.47130 0.86188 0.79802 0.81731 0.79383 1.19848 1.20881 1.17874 0.93561 0.89251 0.93596 0.86377 0.85949 0.86038 0.77228 0.91689 0.91404 0.90789 0.91533 0.91940 0.92141 0.92057 0.92245 0.91873 0.92112 0.91941 0.91618 0.91408 0.87986 0.84526 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 16 2 O -0.31 -6.65 10.28 -34.20 -0.35 -7.00 16 3 C 0.04 0.85 6.70 -39.12 -0.26 0.58 16 4 C -0.14 -2.54 8.77 -38.99 -0.34 -2.88 16 5 C -0.15 -2.68 4.54 -105.04 -0.48 -3.15 16 6 C 0.02 0.26 9.80 -37.19 -0.36 -0.11 16 7 C -0.26 -3.12 9.90 -37.50 -0.37 -3.49 16 8 C 0.54 7.81 6.77 -13.04 -0.09 7.72 16 9 O -0.51 -9.97 12.18 5.17 0.06 -9.90 16 10 N -0.73 -7.97 5.28 -61.75 -0.33 -8.30 16 11 C 0.12 1.36 5.06 -4.04 -0.02 1.34 16 12 C -0.10 -0.76 2.23 -90.63 -0.20 -0.96 16 13 C -0.12 -0.86 5.08 -26.73 -0.14 -0.99 16 14 C -0.12 -0.77 5.92 -26.73 -0.16 -0.92 16 15 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 16 C -0.12 -0.79 5.92 -26.76 -0.16 -0.94 16 17 C -0.11 -0.88 5.20 -26.76 -0.14 -1.02 16 18 C -0.01 -0.18 6.59 -39.13 -0.26 -0.44 16 19 C -0.21 -4.90 9.14 -39.50 -0.36 -5.26 16 20 C 0.16 4.01 6.67 -38.76 -0.26 3.76 16 21 O -0.20 -5.68 8.35 -13.95 -0.12 -5.80 16 22 C -0.38 -11.31 9.94 30.91 0.31 -11.00 16 23 H 0.11 3.19 5.42 -52.49 -0.28 2.91 16 24 C 0.06 1.86 5.49 -17.51 -0.10 1.77 16 25 N -0.88 -25.94 13.96 55.48 0.77 -25.17 16 26 Si 0.90 22.76 28.62 -169.99 -4.86 17.89 16 27 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.25 -6.59 7.11 56.52 0.40 -6.19 16 30 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 33 H 0.12 1.80 6.28 -52.49 -0.33 1.47 16 34 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 35 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.39 3.06 7.63 -40.82 -0.31 2.75 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.43 7.18 -51.93 -0.37 0.06 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.10 1.92 7.02 -52.48 -0.37 1.55 16 51 H 0.14 3.34 5.62 -52.49 -0.29 3.05 16 52 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 414.19 15.07 6.24 6.24 Total: -1.00 -34.40 414.19 -9.36 -43.76 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.23 Total: 3.77 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.55 Total: -15.50 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.45 Total: -33.47 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.40 Total: -22.70 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.86 Total: 17.89 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.40 -9.36 -43.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096610814.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.848 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds