Wall clock time and date at job start Tue Mar 31 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13611 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39749 * 120.09880 * 19.47015 * 3 2 1 5 5 C 1.37735 * 119.90856 * 180.02562 * 4 3 2 6 6 C 1.38969 * 120.09013 * 359.97438 * 5 4 3 7 7 O 1.35753 * 119.89967 * 180.02562 * 6 5 4 8 8 C 1.42901 * 116.99963 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47358 * 179.97438 * 8 7 6 10 10 N 1.46908 * 109.46934 * 65.00040 * 9 8 7 11 11 C 1.46901 * 111.00086 * 66.04683 * 10 9 8 12 12 C 1.50701 * 109.47071 * 61.70010 * 11 10 9 13 13 H 1.08002 * 120.00468 * 5.02219 * 12 11 10 14 14 C 1.37882 * 119.99906 * 185.02381 * 12 11 10 15 15 N 1.31511 * 119.99628 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99920 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47085 * 90.00206 * 16 14 12 18 18 H 1.48500 * 109.46857 * 210.00031 * 16 14 12 19 19 H 1.48500 * 109.47097 * 329.99676 * 16 14 12 20 20 C 1.46897 * 110.99626 * 189.99917 * 10 9 8 21 21 C 1.53001 * 109.47101 * 163.53261 * 20 10 9 22 22 N 1.46895 * 109.47656 * 181.93790 * 21 20 10 23 23 C 1.47008 * 111.00280 * 293.63747 * 22 21 20 24 24 C 1.53101 * 109.26307 * 177.60599 * 23 22 21 25 25 O 1.43016 * 109.25689 * 56.84394 * 24 23 22 26 26 C 1.43013 * 113.73934 * 301.33502 * 25 24 23 27 27 C 1.47014 * 111.00488 * 169.99318 * 22 21 20 28 28 C 1.38956 * 120.19198 * 0.28004 * 6 5 4 29 29 C 1.37743 * 120.09471 * 359.44416 * 28 6 5 30 30 H 1.08003 * 120.04300 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.95351 * 179.97438 * 5 4 3 32 32 H 1.09006 * 109.47117 * 300.00075 * 8 7 6 33 33 H 1.09000 * 109.46942 * 60.00107 * 8 7 6 34 34 H 1.09004 * 109.47206 * 184.99567 * 9 8 7 35 35 H 1.08998 * 109.47622 * 305.00163 * 9 8 7 36 36 H 1.08996 * 109.47110 * 181.69710 * 11 10 9 37 37 H 1.08998 * 109.46642 * 301.70273 * 11 10 9 38 38 H 0.97006 * 119.99939 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.47402 * 283.52985 * 20 10 9 40 40 H 1.08999 * 109.47829 * 43.53052 * 20 10 9 41 41 H 1.09008 * 109.47160 * 301.93823 * 21 20 10 42 42 H 1.09003 * 109.47169 * 61.93324 * 21 20 10 43 43 H 1.09008 * 109.50628 * 297.54027 * 23 22 21 44 44 H 1.09002 * 109.51160 * 57.66413 * 23 22 21 45 45 H 1.08998 * 109.50333 * 296.90986 * 24 23 22 46 46 H 1.09000 * 109.54427 * 176.80473 * 24 23 22 47 47 H 1.09006 * 109.50632 * 298.73121 * 26 25 24 48 48 H 1.08996 * 109.54185 * 178.63236 * 26 25 24 49 49 H 1.08994 * 109.51027 * 302.33686 * 27 22 21 50 50 H 1.09005 * 109.49805 * 62.41845 * 27 22 21 51 51 H 1.08002 * 119.95578 * 179.70227 * 28 6 5 52 52 H 1.07993 * 120.04407 * 180.25235 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -1.1390 -0.4030 5 6 4.6467 -1.1342 -0.4010 6 6 5.3389 0.0019 0.0006 7 8 6.6965 0.0025 0.0006 8 6 7.3447 1.2031 0.4255 9 6 8.8615 1.0146 0.3592 10 7 9.2709 0.8259 -1.0390 11 6 9.0354 2.0441 -1.8255 12 6 9.8621 3.1721 -1.2641 13 1 10.5591 2.9832 -0.4611 14 6 9.7286 4.4456 -1.7757 15 7 8.8802 4.6756 -2.7538 16 14 10.7539 5.8437 -1.0803 17 1 12.0302 5.9433 -1.8328 18 1 10.0034 7.1187 -1.2078 19 1 11.0429 5.5806 0.3523 20 6 10.6766 0.4079 -1.1240 21 6 10.9541 -0.1683 -2.5140 22 7 12.3472 -0.6288 -2.5841 23 6 13.2815 0.5022 -2.4887 24 6 14.7181 -0.0267 -2.5056 25 8 14.9224 -0.7993 -3.6917 26 6 14.0297 -1.9096 -3.8165 27 6 12.5861 -1.3998 -3.8128 28 6 4.6456 1.1355 0.4071 29 6 3.2682 1.1412 0.4027 30 1 2.7321 -2.0224 -0.7148 31 1 5.1894 -2.0146 -0.7119 32 1 7.0514 2.0251 -0.2276 33 1 7.0517 1.4310 1.4504 34 1 9.3554 1.8969 0.7665 35 1 9.1447 0.1382 0.9421 36 1 9.3189 1.8672 -2.8629 37 1 7.9791 2.3089 -1.7775 38 1 8.7859 5.5715 -3.1136 39 1 11.3227 1.2688 -0.9520 40 1 10.8759 -0.3526 -0.3691 41 1 10.2841 -1.0079 -2.6997 42 1 10.7879 0.6025 -3.2667 43 1 13.1301 1.1717 -3.3355 44 1 13.1039 1.0438 -1.5596 45 1 14.8856 -0.6534 -1.6297 46 1 15.4153 0.8111 -2.4924 47 1 14.1771 -2.5911 -2.9786 48 1 14.2283 -2.4338 -4.7512 49 1 11.9009 -2.2467 -3.8502 50 1 12.4229 -0.7609 -4.6807 51 1 5.1875 2.0147 0.7230 52 1 2.7302 2.0240 0.7149 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096981430.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:35 Heat of formation + Delta-G solvation = -12.297377 kcal Electronic energy + Delta-G solvation = -31778.276467 eV Core-core repulsion = 27550.670292 eV Total energy + Delta-G solvation = -4227.606175 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.16569 -39.44800 -38.11151 -37.09600 -36.08845 -35.28211 -32.62275 -31.44375 -31.15353 -30.81244 -29.84897 -28.37999 -26.89322 -25.11603 -23.97847 -23.77269 -23.32397 -22.74598 -21.19795 -20.19019 -19.55709 -18.93748 -17.96850 -16.67306 -16.47480 -16.07438 -15.94899 -15.86463 -15.23005 -14.98216 -14.76866 -14.76074 -14.65661 -14.29343 -14.20760 -13.92507 -13.85312 -13.63421 -13.50522 -13.12333 -12.90180 -12.77589 -12.45486 -12.21846 -12.20619 -12.08901 -11.96253 -11.63799 -11.30946 -11.22470 -11.19680 -11.06226 -10.86476 -10.68896 -10.58614 -10.46145 -10.27334 -10.21471 -10.03042 -9.67133 -9.56672 -9.20587 -8.57622 -8.18153 -8.15976 -7.29734 -6.16910 -4.27472 0.82514 1.22640 2.62006 2.91808 3.15831 3.24457 3.25108 3.36607 3.81259 3.82430 3.89744 3.98628 4.27006 4.68413 4.74870 4.85367 4.97962 5.07453 5.12683 5.13369 5.14834 5.23702 5.29465 5.36868 5.43079 5.45969 5.55952 5.59681 5.63856 5.71519 5.76155 5.84019 5.85781 5.86853 5.97156 6.02981 6.07911 6.19289 6.22413 6.24842 6.29183 6.35240 6.46150 6.58219 6.64067 7.03830 7.11426 7.23535 7.24913 7.38681 7.43949 7.52905 7.75681 7.90855 8.10557 8.14704 8.83082 9.40238 10.87305 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.008621 B = 0.002465 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.226981 B =11355.312068 C =13856.602753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.267 3.733 3 C -0.091 4.091 4 C -0.030 4.030 5 C -0.161 4.161 6 C 0.179 3.821 7 O -0.288 6.288 8 C 0.062 3.938 9 C 0.066 3.934 10 N -0.536 5.536 11 C 0.183 3.817 12 C -0.554 4.554 13 H 0.057 0.943 14 C 0.069 3.931 15 N -0.886 5.886 16 Si 0.884 3.116 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.067 3.933 21 C 0.066 3.934 22 N -0.537 5.537 23 C 0.015 3.985 24 C 0.065 3.935 25 O -0.390 6.390 26 C 0.065 3.935 27 C 0.018 3.982 28 C -0.216 4.216 29 C -0.024 4.024 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.028 0.972 37 H 0.035 0.965 38 H 0.263 0.737 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.094 0.906 47 H 0.057 0.943 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.041 0.959 51 H 0.140 0.860 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.695 -11.391 4.285 12.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.048 4.048 3 C -0.095 4.095 4 C -0.050 4.050 5 C -0.179 4.179 6 C 0.130 3.870 7 O -0.199 6.199 8 C -0.013 4.013 9 C -0.062 4.062 10 N -0.260 5.260 11 C 0.058 3.942 12 C -0.593 4.593 13 H 0.075 0.925 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.712 3.288 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.062 4.062 21 C -0.062 4.062 22 N -0.263 5.263 23 C -0.113 4.113 24 C -0.012 4.012 25 O -0.309 6.309 26 C -0.012 4.012 27 C -0.110 4.110 28 C -0.235 4.235 29 C -0.045 4.045 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.075 0.925 48 H 0.111 0.889 49 H 0.102 0.898 50 H 0.059 0.941 51 H 0.158 0.842 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.047 -12.035 4.174 12.738 hybrid contribution 1.009 2.480 0.144 2.681 sum 0.963 -9.555 4.317 10.529 Atomic orbital electron populations 1.81236 1.12189 1.07936 1.10169 1.25726 0.92623 0.93405 0.93009 1.15853 0.84178 0.97119 1.12375 1.20890 0.93151 0.96396 0.94595 1.20355 0.93008 0.98267 1.06296 1.19456 0.83924 0.93331 0.90328 1.86203 1.14565 1.39041 1.80124 1.23141 0.93647 0.85786 0.98682 1.21928 0.91469 1.00923 0.91908 1.62406 1.18492 1.35984 1.09164 1.19829 0.97101 0.84101 0.93212 1.21685 1.23811 0.94050 1.19726 0.92518 1.24933 0.95080 0.98667 0.94771 1.69933 1.35217 1.21801 1.25475 0.86719 0.80529 0.82061 0.79483 1.20595 1.21099 1.19908 1.21830 0.90226 0.98500 0.95612 1.22029 0.86683 0.99263 0.98224 1.62181 1.04909 1.23230 1.35942 1.22816 0.92545 0.92966 1.02969 1.22687 0.95782 0.95173 0.87580 1.87951 1.57438 1.42336 1.43132 1.22632 0.88148 0.88537 1.01847 1.22732 0.97738 0.98748 0.91801 1.21307 0.94646 0.99352 1.08145 1.20921 0.93483 0.96180 0.93916 0.84732 0.84158 0.90091 0.92314 0.91419 0.91771 0.95370 0.94736 0.92690 0.93473 0.92356 0.90711 0.93916 0.93720 0.89030 0.92518 0.88741 0.92504 0.88871 0.89810 0.94085 0.84209 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.18 18.54 41.84 0.78 -5.40 16 2 C 0.27 3.20 15.33 -22.47 -0.34 2.85 16 3 C -0.09 -0.97 5.74 -106.84 -0.61 -1.59 16 4 C -0.03 -0.29 9.75 -39.20 -0.38 -0.67 16 5 C -0.16 -1.74 9.97 -39.49 -0.39 -2.14 16 6 C 0.18 2.29 6.69 -39.04 -0.26 2.03 16 7 O -0.29 -4.28 10.07 -18.97 -0.19 -4.47 16 8 C 0.06 0.92 4.79 37.16 0.18 1.10 16 9 C 0.07 1.08 5.14 -3.82 -0.02 1.06 16 10 N -0.54 -9.99 4.61 -236.07 -1.09 -11.08 16 11 C 0.18 4.16 4.77 -4.97 -0.02 4.14 16 12 C -0.55 -13.46 7.32 -34.44 -0.25 -13.72 16 13 H 0.06 1.36 5.96 -52.49 -0.31 1.05 16 14 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -24.18 13.29 55.43 0.74 -23.45 16 16 Si 0.88 19.82 29.54 -169.99 -5.02 14.80 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 C 0.07 1.15 4.70 -3.83 -0.02 1.14 16 21 C 0.07 1.07 4.98 -3.83 -0.02 1.06 16 22 N -0.54 -7.77 4.73 -234.31 -1.11 -8.88 16 23 C 0.02 0.22 5.44 -3.71 -0.02 0.20 16 24 C 0.06 0.80 7.01 37.21 0.26 1.06 16 25 O -0.39 -5.28 10.83 -35.23 -0.38 -5.66 16 26 C 0.07 0.74 7.01 37.20 0.26 1.00 16 27 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 28 C -0.22 -2.52 9.01 -39.50 -0.36 -2.88 16 29 C -0.02 -0.26 9.75 -39.19 -0.38 -0.64 16 30 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 31 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.08 1.38 5.83 -51.93 -0.30 1.08 16 33 H 0.06 0.72 7.64 -51.93 -0.40 0.32 16 34 H 0.07 1.19 6.51 -51.93 -0.34 0.85 16 35 H 0.06 0.94 7.86 -51.93 -0.41 0.53 16 36 H 0.03 0.71 6.69 -51.93 -0.35 0.36 16 37 H 0.03 0.85 6.30 -51.93 -0.33 0.52 16 38 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.05 0.90 4.70 -51.93 -0.24 0.65 16 40 H 0.06 0.94 7.80 -51.93 -0.40 0.53 16 41 H 0.07 1.20 8.04 -51.92 -0.42 0.78 16 42 H 0.04 0.82 6.80 -51.93 -0.35 0.46 16 43 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 44 H 0.09 1.36 6.42 -51.93 -0.33 1.03 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 50 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.14 1.56 6.28 -52.49 -0.33 1.23 16 52 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 417.65 15.07 6.29 6.29 Total: -1.00 -28.59 417.65 -10.36 -38.95 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.87 Total: 3.01 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.50 Total: -4.11 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.68 Total: -48.81 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.57 Total: -10.13 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -28.59 -10.36 -38.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096981430.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.651 kcal (2) G-P(sol) polarization free energy of solvation -28.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds