Wall clock time and date at job start Tue Mar 31 2020 05:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13611 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39749 * 120.09880 * 19.47015 * 3 2 1 5 5 C 1.37735 * 119.90856 * 180.02562 * 4 3 2 6 6 C 1.38969 * 120.09013 * 359.97438 * 5 4 3 7 7 O 1.35753 * 119.89967 * 180.02562 * 6 5 4 8 8 C 1.42901 * 116.99963 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47358 * 179.97438 * 8 7 6 10 10 N 1.46908 * 109.46934 * 65.00040 * 9 8 7 11 11 C 1.46901 * 111.00086 * 66.04683 * 10 9 8 12 12 C 1.50701 * 109.47071 * 61.70010 * 11 10 9 13 13 H 1.08002 * 120.00468 * 5.02219 * 12 11 10 14 14 C 1.37882 * 119.99906 * 185.02381 * 12 11 10 15 15 N 1.31511 * 119.99628 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99920 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47085 * 90.00206 * 16 14 12 18 18 H 1.48500 * 109.46857 * 210.00031 * 16 14 12 19 19 H 1.48500 * 109.47097 * 329.99676 * 16 14 12 20 20 C 1.46897 * 110.99626 * 189.99917 * 10 9 8 21 21 C 1.53001 * 109.47101 * 163.53261 * 20 10 9 22 22 N 1.46895 * 109.47656 * 181.93790 * 21 20 10 23 23 C 1.47008 * 111.00280 * 293.63747 * 22 21 20 24 24 C 1.53101 * 109.26307 * 177.60599 * 23 22 21 25 25 O 1.43016 * 109.25689 * 56.84394 * 24 23 22 26 26 C 1.43013 * 113.73934 * 301.33502 * 25 24 23 27 27 C 1.47014 * 111.00488 * 169.99318 * 22 21 20 28 28 C 1.38956 * 120.19198 * 0.28004 * 6 5 4 29 29 C 1.37743 * 120.09471 * 359.44416 * 28 6 5 30 30 H 1.08003 * 120.04300 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.95351 * 179.97438 * 5 4 3 32 32 H 1.09006 * 109.47117 * 300.00075 * 8 7 6 33 33 H 1.09000 * 109.46942 * 60.00107 * 8 7 6 34 34 H 1.09004 * 109.47206 * 184.99567 * 9 8 7 35 35 H 1.08998 * 109.47622 * 305.00163 * 9 8 7 36 36 H 1.08996 * 109.47110 * 181.69710 * 11 10 9 37 37 H 1.08998 * 109.46642 * 301.70273 * 11 10 9 38 38 H 0.97006 * 119.99939 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.47402 * 283.52985 * 20 10 9 40 40 H 1.08999 * 109.47829 * 43.53052 * 20 10 9 41 41 H 1.09008 * 109.47160 * 301.93823 * 21 20 10 42 42 H 1.09003 * 109.47169 * 61.93324 * 21 20 10 43 43 H 1.09008 * 109.50628 * 297.54027 * 23 22 21 44 44 H 1.09002 * 109.51160 * 57.66413 * 23 22 21 45 45 H 1.08998 * 109.50333 * 296.90986 * 24 23 22 46 46 H 1.09000 * 109.54427 * 176.80473 * 24 23 22 47 47 H 1.09006 * 109.50632 * 298.73121 * 26 25 24 48 48 H 1.08996 * 109.54185 * 178.63236 * 26 25 24 49 49 H 1.08994 * 109.51027 * 302.33686 * 27 22 21 50 50 H 1.09005 * 109.49805 * 62.41845 * 27 22 21 51 51 H 1.08002 * 119.95578 * 179.70227 * 28 6 5 52 52 H 1.07993 * 120.04407 * 180.25235 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -1.1390 -0.4030 5 6 4.6467 -1.1342 -0.4010 6 6 5.3389 0.0019 0.0006 7 8 6.6965 0.0025 0.0006 8 6 7.3447 1.2031 0.4255 9 6 8.8615 1.0146 0.3592 10 7 9.2709 0.8259 -1.0390 11 6 9.0354 2.0441 -1.8255 12 6 9.8621 3.1721 -1.2641 13 1 10.5591 2.9832 -0.4611 14 6 9.7286 4.4456 -1.7757 15 7 8.8802 4.6756 -2.7538 16 14 10.7539 5.8437 -1.0803 17 1 12.0302 5.9433 -1.8328 18 1 10.0034 7.1187 -1.2078 19 1 11.0429 5.5806 0.3523 20 6 10.6766 0.4079 -1.1240 21 6 10.9541 -0.1683 -2.5140 22 7 12.3472 -0.6288 -2.5841 23 6 13.2815 0.5022 -2.4887 24 6 14.7181 -0.0267 -2.5056 25 8 14.9224 -0.7993 -3.6917 26 6 14.0297 -1.9096 -3.8165 27 6 12.5861 -1.3998 -3.8128 28 6 4.6456 1.1355 0.4071 29 6 3.2682 1.1412 0.4027 30 1 2.7321 -2.0224 -0.7148 31 1 5.1894 -2.0146 -0.7119 32 1 7.0514 2.0251 -0.2276 33 1 7.0517 1.4310 1.4504 34 1 9.3554 1.8969 0.7665 35 1 9.1447 0.1382 0.9421 36 1 9.3189 1.8672 -2.8629 37 1 7.9791 2.3089 -1.7775 38 1 8.7859 5.5715 -3.1136 39 1 11.3227 1.2688 -0.9520 40 1 10.8759 -0.3526 -0.3691 41 1 10.2841 -1.0079 -2.6997 42 1 10.7879 0.6025 -3.2667 43 1 13.1301 1.1717 -3.3355 44 1 13.1039 1.0438 -1.5596 45 1 14.8856 -0.6534 -1.6297 46 1 15.4153 0.8111 -2.4924 47 1 14.1771 -2.5911 -2.9786 48 1 14.2283 -2.4338 -4.7512 49 1 11.9009 -2.2467 -3.8502 50 1 12.4229 -0.7609 -4.6807 51 1 5.1875 2.0147 0.7230 52 1 2.7302 2.0240 0.7149 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096981430.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:33 Heat of formation + Delta-G solvation = -30.411770 kcal Electronic energy + Delta-G solvation = -31779.061966 eV Core-core repulsion = 27550.670292 eV Total energy + Delta-G solvation = -4228.391674 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.14895 -40.54108 -39.25603 -38.38160 -37.11482 -36.50619 -34.54143 -32.43578 -32.14043 -31.84118 -30.96172 -29.86473 -28.41711 -26.41242 -25.40665 -24.95033 -24.29129 -23.85961 -22.35214 -21.34692 -21.08150 -19.83606 -19.02481 -18.45717 -17.75845 -17.17954 -17.03974 -16.98437 -16.65424 -16.23463 -15.94879 -15.88563 -15.63492 -15.54274 -15.50267 -14.98444 -14.92971 -14.76025 -14.45228 -14.41524 -14.31071 -14.04352 -13.72399 -13.50961 -13.29202 -13.16758 -13.04421 -13.02824 -12.81213 -12.73296 -12.37083 -12.36018 -12.28549 -11.99803 -11.93304 -11.85814 -11.70862 -11.55970 -11.44585 -11.28032 -10.64332 -10.55982 -10.04358 -9.42474 -9.14932 -8.93298 -8.11947 -6.31252 -0.08883 0.38710 1.36527 1.39493 1.47194 1.65546 1.96946 2.31636 2.37737 2.67785 2.92803 2.96197 2.97918 3.13250 3.49317 3.82975 3.92875 3.93918 4.06886 4.07854 4.16180 4.17957 4.22362 4.24190 4.32564 4.41230 4.49684 4.53623 4.56430 4.59717 4.64047 4.72446 4.80359 4.86859 4.88488 4.95049 4.96950 5.01754 5.03264 5.09193 5.13910 5.19612 5.30133 5.34635 5.39814 5.41028 5.68871 5.78607 5.94236 6.00372 6.08239 6.19830 6.29649 6.46764 6.51744 6.58813 6.91042 7.40352 8.88812 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.008621 B = 0.002465 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.226981 B =11355.312068 C =13856.602753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.289 3.711 3 C -0.093 4.093 4 C -0.018 4.018 5 C -0.161 4.161 6 C 0.156 3.844 7 O -0.303 6.303 8 C 0.070 3.930 9 C 0.065 3.935 10 N -0.536 5.536 11 C 0.204 3.796 12 C -0.548 4.548 13 H 0.061 0.939 14 C 0.018 3.982 15 N -0.924 5.924 16 Si 0.945 3.055 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.262 1.262 20 C 0.073 3.927 21 C 0.077 3.923 22 N -0.531 5.531 23 C 0.016 3.984 24 C 0.070 3.930 25 O -0.407 6.407 26 C 0.066 3.934 27 C 0.015 3.985 28 C -0.224 4.224 29 C -0.022 4.022 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.089 0.911 36 H -0.005 1.005 37 H 0.012 0.988 38 H 0.262 0.738 39 H 0.028 0.972 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.005 0.995 43 H 0.017 0.983 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.108 0.892 47 H 0.070 0.930 48 H 0.117 0.883 49 H 0.102 0.898 50 H 0.024 0.976 51 H 0.140 0.860 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.451 -13.052 5.681 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.025 4.025 3 C -0.097 4.097 4 C -0.038 4.038 5 C -0.180 4.180 6 C 0.108 3.892 7 O -0.215 6.215 8 C -0.005 4.005 9 C -0.063 4.063 10 N -0.260 5.260 11 C 0.077 3.923 12 C -0.587 4.587 13 H 0.079 0.921 14 C -0.182 4.182 15 N -0.564 5.564 16 Si 0.771 3.229 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.186 1.186 20 C -0.055 4.055 21 C -0.051 4.051 22 N -0.257 5.257 23 C -0.113 4.113 24 C -0.007 4.007 25 O -0.326 6.326 26 C -0.010 4.010 27 C -0.113 4.113 28 C -0.242 4.242 29 C -0.042 4.042 30 H 0.180 0.820 31 H 0.171 0.829 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.013 0.987 37 H 0.030 0.970 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.023 0.977 43 H 0.035 0.965 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.126 0.874 47 H 0.088 0.912 48 H 0.135 0.865 49 H 0.120 0.880 50 H 0.042 0.958 51 H 0.158 0.842 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.715 -13.717 5.587 14.829 hybrid contribution 0.729 2.905 -0.304 3.011 sum 1.444 -10.812 5.283 12.120 Atomic orbital electron populations 1.81265 1.13263 1.09172 1.11547 1.25779 0.92559 0.92275 0.91888 1.15935 0.83480 0.97651 1.12628 1.21158 0.92675 0.96893 0.93079 1.20557 0.93468 0.98109 1.05844 1.19760 0.83217 0.94560 0.91674 1.86144 1.15849 1.38589 1.80917 1.22944 0.92789 0.85137 0.99589 1.22010 0.92501 1.01456 0.90325 1.62349 1.19512 1.33614 1.10483 1.19390 0.95335 0.85466 0.92091 1.21938 1.23223 0.94399 1.19122 0.92113 1.25681 0.96162 1.01180 0.95135 1.70062 1.37090 1.22162 1.27090 0.85756 0.78767 0.79070 0.79343 1.20660 1.21230 1.18565 1.21811 0.88870 0.98227 0.96593 1.21851 0.88311 0.98233 0.96699 1.62244 1.03575 1.22837 1.36999 1.22820 0.94308 0.92743 1.01398 1.22718 0.94149 0.95872 0.87928 1.87935 1.57961 1.43063 1.43603 1.22804 0.86432 0.88055 1.03744 1.22879 0.99606 0.98677 0.90148 1.21365 0.95168 0.99195 1.08505 1.21089 0.93060 0.96823 0.93254 0.81961 0.82878 0.93060 0.89442 0.92648 0.89272 0.98710 0.96967 0.92894 0.95377 0.90211 0.90065 0.97665 0.96510 0.89682 0.91014 0.87380 0.91162 0.86475 0.87997 0.95789 0.84232 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.91 18.54 19.00 0.35 -12.55 16 2 C 0.29 6.48 15.33 88.33 1.35 7.84 16 3 C -0.09 -1.81 5.74 -21.30 -0.12 -1.93 16 4 C -0.02 -0.30 9.75 22.52 0.22 -0.08 16 5 C -0.16 -3.23 9.97 22.33 0.22 -3.00 16 6 C 0.16 3.87 6.69 22.62 0.15 4.02 16 7 O -0.30 -8.84 10.07 -90.78 -0.91 -9.76 16 8 C 0.07 2.08 4.79 71.98 0.34 2.43 16 9 C 0.07 2.09 5.14 86.30 0.44 2.54 16 10 N -0.54 -20.26 4.61 -900.78 -4.15 -24.42 16 11 C 0.20 9.69 4.77 85.56 0.41 10.10 16 12 C -0.55 -27.34 7.32 25.60 0.19 -27.15 16 13 H 0.06 2.94 5.96 -2.91 -0.02 2.93 16 14 C 0.02 0.95 5.46 84.66 0.46 1.41 16 15 N -0.92 -52.22 13.29 21.45 0.28 -51.93 16 16 Si 0.94 41.16 29.54 68.60 2.03 43.18 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 20 C 0.07 2.53 4.70 86.30 0.41 2.94 16 21 C 0.08 2.58 4.98 86.30 0.43 3.01 16 22 N -0.53 -15.17 4.73 -895.22 -4.23 -19.40 16 23 C 0.02 0.46 5.44 86.32 0.47 0.93 16 24 C 0.07 1.65 7.01 72.02 0.50 2.15 16 25 O -0.41 -10.36 10.83 -148.98 -1.61 -11.98 16 26 C 0.07 1.35 7.01 72.01 0.50 1.85 16 27 C 0.02 0.37 5.64 86.31 0.49 0.85 16 28 C -0.22 -5.09 9.01 22.32 0.20 -4.88 16 29 C -0.02 -0.43 9.75 22.52 0.22 -0.21 16 30 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.05 1.82 5.83 -2.38 -0.01 1.81 16 33 H 0.09 2.04 7.64 -2.39 -0.02 2.02 16 34 H 0.06 1.93 6.51 -2.39 -0.02 1.91 16 35 H 0.09 2.43 7.86 -2.39 -0.02 2.41 16 36 H -0.01 -0.28 6.69 -2.39 -0.02 -0.30 16 37 H 0.01 0.64 6.30 -2.39 -0.02 0.62 16 38 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 39 H 0.03 1.08 4.70 -2.38 -0.01 1.07 16 40 H 0.08 2.43 7.80 -2.39 -0.02 2.41 16 41 H 0.08 2.59 8.04 -2.38 -0.02 2.57 16 42 H 0.01 0.21 6.80 -2.39 -0.02 0.19 16 43 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 44 H 0.08 2.57 6.42 -2.39 -0.02 2.55 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 48 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.10 2.09 8.09 -2.39 -0.02 2.07 16 50 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 51 H 0.14 3.12 6.28 -2.91 -0.02 3.10 16 52 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -63.51 417.65 -0.42 -63.93 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.93 Total: 20.13 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 6.89 Total: 2.80 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -7.75 Total: -108.31 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -2.53 Total: -21.73 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -63.51 -0.42 -63.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096981430.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.519 kcal (2) G-P(sol) polarization free energy of solvation -63.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds