Wall clock time and date at job start Tue Mar 31 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99853 * 2 1 4 4 H 1.48497 * 109.47078 * 240.00224 * 3 2 1 5 5 H 1.48501 * 109.47172 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46921 * 120.00075 * 3 2 1 7 7 C 1.37873 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00137 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46984 * 180.02562 * 9 7 2 11 11 C 1.46501 * 119.99745 * 90.00447 * 10 9 7 12 12 C 1.50706 * 109.46941 * 89.99844 * 11 10 9 13 13 C 1.38227 * 119.61686 * 95.02727 * 12 11 10 14 14 C 1.38627 * 119.15663 * 179.70253 * 13 12 11 15 15 C 1.38669 * 118.42388 * 0.51169 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.50231 * 15 14 13 17 17 N 1.31856 * 119.61480 * 274.99645 * 12 11 10 18 18 C 1.34772 * 120.00261 * 270.00419 * 10 9 7 19 19 O 1.21282 * 119.99928 * 180.02562 * 18 10 9 20 20 C 1.50703 * 120.00166 * 359.97438 * 18 10 9 21 21 C 1.50692 * 109.47332 * 180.02562 * 20 18 10 22 22 C 1.38270 * 119.95178 * 264.73139 * 21 20 18 23 23 C 1.38131 * 120.07001 * 179.73007 * 22 21 20 24 24 C 1.38764 * 119.96851 * 0.53411 * 23 22 21 25 25 O 1.35898 * 120.04841 * 179.70869 * 24 23 22 26 26 C 1.38691 * 119.90277 * 359.73777 * 24 23 22 27 27 C 1.38285 * 119.93116 * 359.97438 * 26 24 23 28 28 Cl 1.73598 * 119.98261 * 179.97438 * 27 26 24 29 29 H 0.97000 * 120.00071 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46863 * 60.00789 * 9 7 2 31 31 H 1.08997 * 109.47601 * 300.00496 * 9 7 2 32 32 H 1.08997 * 109.47174 * 330.00056 * 11 10 9 33 33 H 1.08997 * 109.46998 * 209.99914 * 11 10 9 34 34 H 1.07998 * 120.41947 * 359.94797 * 13 12 11 35 35 H 1.08008 * 120.78691 * 180.26734 * 14 13 12 36 36 H 1.08002 * 120.42244 * 179.78749 * 15 14 13 37 37 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 38 38 H 1.09004 * 109.46710 * 300.00327 * 20 18 10 39 39 H 1.09004 * 109.47071 * 59.99873 * 20 18 10 40 40 H 1.08001 * 119.96202 * 359.97438 * 22 21 20 41 41 H 1.07995 * 120.01618 * 180.25305 * 23 22 21 42 42 H 0.96706 * 113.99972 * 270.02704 * 25 24 23 43 43 H 1.08004 * 120.03335 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6791 -4.1694 1.2682 12 6 1.7623 -5.2837 1.7032 13 6 2.0794 -6.5916 1.3878 14 6 1.2325 -7.6096 1.7980 15 6 0.0877 -7.2717 2.5039 16 6 -0.1638 -5.9417 2.7821 17 7 0.6673 -4.9996 2.3806 18 6 2.6412 -4.1248 -1.1677 19 8 3.4290 -5.0469 -1.1676 20 6 2.1512 -3.5525 -2.4728 21 6 2.7872 -4.2971 -3.6182 22 6 3.9310 -3.7994 -4.2148 23 6 4.5192 -4.4828 -5.2612 24 6 3.9555 -5.6643 -5.7214 25 8 4.5296 -6.3349 -6.7547 26 6 2.8051 -6.1595 -5.1258 27 6 2.2230 -5.4751 -4.0746 28 17 0.7826 -6.0934 -3.3285 29 1 -0.4850 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8896 32 1 2.6867 -3.3878 2.0279 33 1 3.6885 -4.5594 1.1380 34 1 2.9775 -6.8178 0.8324 35 1 1.4569 -8.6411 1.5697 36 1 -0.5963 -8.0386 2.8361 37 1 -1.0510 -5.6706 3.3349 38 1 1.0675 -3.6550 -2.5304 39 1 2.4199 -2.4977 -2.5307 40 1 4.3671 -2.8773 -3.8597 41 1 5.4149 -4.0954 -5.7239 42 1 4.2024 -6.0705 -7.6255 43 1 2.3648 -7.0791 -5.4821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097059258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:33 Heat of formation + Delta-G solvation = -23.932271 kcal Electronic energy + Delta-G solvation = -29501.115379 eV Core-core repulsion = 25344.328990 eV Total energy + Delta-G solvation = -4156.786388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.103 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.16758 -39.84120 -38.77172 -37.12284 -36.05312 -35.06048 -32.90892 -32.16656 -32.04051 -31.16823 -30.77456 -27.78118 -27.13408 -25.46472 -23.31276 -22.89751 -22.81661 -22.21899 -21.35545 -18.59105 -18.47534 -16.89735 -16.55970 -16.34427 -16.19109 -16.03033 -15.67355 -15.47924 -15.22332 -15.02742 -14.43318 -14.24148 -14.11859 -13.62128 -13.56042 -13.11851 -13.01507 -12.86355 -12.45226 -12.40749 -12.25108 -11.79645 -11.58944 -11.54887 -11.26638 -11.23055 -11.17611 -10.93781 -10.76629 -10.68057 -10.60741 -10.18355 -9.81444 -9.62874 -9.27627 -9.12197 -8.84324 -8.74398 -8.54480 -8.35946 -7.76959 -6.15530 -4.23387 1.11235 1.22448 1.33329 1.54045 2.23648 3.24599 3.30415 3.30621 3.37473 3.44984 3.82383 4.11084 4.28856 4.37816 4.62442 4.81234 4.93012 4.99779 5.01876 5.06381 5.17571 5.27710 5.35373 5.40210 5.45665 5.57930 5.75838 5.80966 5.86923 5.90135 6.04130 6.10689 6.19168 6.24400 6.29249 6.38287 6.43171 6.53067 6.64762 6.78186 6.94769 7.25412 7.50074 7.53322 7.78833 8.07887 8.27294 8.36677 8.79119 8.97542 9.43968 10.91213 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.006609 B = 0.004621 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4235.396761 B = 6057.463131 C = 9216.593281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.237 3.763 10 N -0.585 5.585 11 C 0.168 3.832 12 C 0.121 3.879 13 C -0.150 4.150 14 C -0.083 4.083 15 C -0.182 4.182 16 C 0.094 3.906 17 N -0.464 5.464 18 C 0.526 3.474 19 O -0.565 6.565 20 C -0.105 4.105 21 C -0.047 4.047 22 C -0.079 4.079 23 C -0.139 4.139 24 C 0.105 3.895 25 O -0.496 6.496 26 C -0.139 4.139 27 C -0.006 4.006 28 Cl -0.063 7.063 29 H 0.265 0.735 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.152 0.848 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.388 0.612 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 -11.950 -6.567 13.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.079 0.921 9 C 0.117 3.883 10 N -0.315 5.315 11 C 0.044 3.956 12 C -0.018 4.018 13 C -0.170 4.170 14 C -0.110 4.110 15 C -0.202 4.202 16 C -0.063 4.063 17 N -0.173 5.173 18 C 0.314 3.686 19 O -0.446 6.446 20 C -0.144 4.144 21 C -0.049 4.049 22 C -0.098 4.098 23 C -0.158 4.158 24 C 0.061 3.939 25 O -0.306 6.306 26 C -0.158 4.158 27 C -0.033 4.033 28 Cl -0.034 7.034 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.169 0.831 38 H 0.122 0.878 39 H 0.137 0.863 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.244 0.756 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.729 -11.733 -5.842 13.388 hybrid contribution -0.011 0.211 -0.460 0.506 sum 2.718 -11.522 -6.302 13.411 Atomic orbital electron populations 1.69924 1.05987 1.27338 1.49354 1.24921 0.94801 0.99141 0.94760 0.86603 0.79564 0.82776 0.78777 1.20145 1.21199 1.20132 1.21439 0.93497 0.90466 1.52467 0.92121 1.19513 0.87447 0.82096 0.99208 1.48143 1.45584 1.34533 1.03284 1.20131 0.94741 0.93464 0.87257 1.21876 0.92978 0.94058 0.92909 1.22120 1.01409 0.93396 1.00108 1.21536 0.93942 0.99597 0.95887 1.22079 0.98627 0.98084 1.01395 1.22751 0.97931 0.88840 0.96822 1.67597 1.02870 1.37302 1.09546 1.20131 0.80845 0.82311 0.85291 1.90600 1.36086 1.30041 1.87825 1.20729 1.02171 1.01741 0.89793 1.19455 0.95371 0.93684 0.96351 1.20927 0.93879 1.00113 0.94838 1.21424 1.00964 0.94491 0.98875 1.18181 0.92209 0.91694 0.91832 1.84844 1.65582 1.63760 1.16409 1.21156 0.95988 1.01105 0.97536 1.20550 0.91213 0.95270 0.96218 1.98372 1.36386 1.86782 1.81814 0.92489 0.94710 0.93464 0.88533 0.89331 0.84473 0.85380 0.85374 0.83105 0.87761 0.86310 0.84429 0.84990 0.75622 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.29 13.29 55.43 0.74 -23.56 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.54 -13.67 9.28 -34.44 -0.32 -13.99 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.24 5.60 4.97 -5.19 -0.03 5.58 16 10 N -0.59 -12.17 2.44 -176.43 -0.43 -12.60 16 11 C 0.17 3.19 5.71 -5.19 -0.03 3.16 16 12 C 0.12 2.17 6.36 -82.58 -0.53 1.65 16 13 C -0.15 -2.40 9.72 -39.44 -0.38 -2.78 16 14 C -0.08 -1.12 10.18 -39.28 -0.40 -1.52 16 15 C -0.18 -2.32 10.11 -39.44 -0.40 -2.72 16 16 C 0.09 1.40 11.18 -17.55 -0.20 1.20 16 17 N -0.46 -8.50 10.27 -9.47 -0.10 -8.60 16 18 C 0.53 10.54 7.66 -10.99 -0.08 10.46 16 19 O -0.56 -11.90 15.57 5.56 0.09 -11.81 16 20 C -0.10 -1.89 3.89 -29.04 -0.11 -2.01 16 21 C -0.05 -0.76 4.38 -104.57 -0.46 -1.22 16 22 C -0.08 -1.13 9.67 -39.61 -0.38 -1.51 16 23 C -0.14 -1.74 9.99 -39.43 -0.39 -2.13 16 24 C 0.11 1.32 6.70 -39.22 -0.26 1.06 16 25 O -0.50 -5.20 13.50 -19.42 -0.26 -5.46 16 26 C -0.14 -1.87 9.77 -39.40 -0.38 -2.25 16 27 C -0.01 -0.09 6.31 -39.52 -0.25 -0.34 16 28 Cl -0.06 -0.97 27.39 -51.86 -1.42 -2.39 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.03 0.85 6.44 -51.93 -0.33 0.52 16 31 H 0.05 1.23 8.07 -51.93 -0.42 0.81 16 32 H 0.10 1.87 8.07 -51.93 -0.42 1.45 16 33 H 0.09 1.58 7.32 -51.93 -0.38 1.20 16 34 H 0.14 2.19 8.01 -52.49 -0.42 1.77 16 35 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.10 1.90 6.38 -51.93 -0.33 1.57 16 39 H 0.12 2.17 7.91 -51.93 -0.41 1.76 16 40 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.39 2.03 9.06 45.56 0.41 2.44 16 43 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -31.22 390.41 -9.61 -40.84 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -4.38 Total: 8.28 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -4.71 Total: -5.72 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.21 Total: -44.75 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.18 Total: -17.27 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.42 Total: -2.39 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.22 -9.61 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097059258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.907 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds