Wall clock time and date at job start Tue Mar 31 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99570 * 2 1 4 4 H 1.48505 * 109.47096 * 239.99867 * 3 2 1 5 5 H 1.48496 * 109.47622 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46877 * 120.00702 * 3 2 1 7 7 C 1.37873 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00069 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99951 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47418 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47371 * 179.97438 * 10 9 7 12 12 S 1.81392 * 109.47163 * 180.02562 * 11 10 9 13 13 O 1.42101 * 109.47068 * 296.38974 * 12 11 10 14 14 C 1.81402 * 103.00151 * 179.97438 * 12 11 10 15 15 C 1.50697 * 109.47304 * 179.97438 * 14 12 11 16 16 C 1.35127 * 125.69388 * 270.01813 * 15 14 12 17 17 N 1.36818 * 107.18209 * 179.97438 * 16 15 14 18 18 C 1.36577 * 132.54873 * 179.97438 * 17 16 15 19 19 C 1.35034 * 120.61131 * 180.02562 * 18 17 16 20 20 Cl 1.73605 * 119.85573 * 179.72828 * 19 18 17 21 21 C 1.40552 * 120.28775 * 0.02562 * 19 18 17 22 22 C 1.36103 * 119.67396 * 359.97438 * 21 19 18 23 23 Cl 1.73604 * 120.33288 * 179.97438 * 22 21 19 24 24 C 1.37031 * 107.00618 * 0.02562 * 17 16 15 25 25 N 1.32575 * 108.04298 * 359.97438 * 24 17 16 26 26 H 0.96999 * 120.00190 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.47127 * 59.99992 * 9 7 2 28 28 H 1.09002 * 109.47264 * 300.00059 * 9 7 2 29 29 H 1.09006 * 109.46699 * 60.00071 * 10 9 7 30 30 H 1.09002 * 109.47230 * 300.00421 * 10 9 7 31 31 H 1.08995 * 109.46703 * 60.00112 * 11 10 9 32 32 H 1.08997 * 109.46900 * 300.00182 * 11 10 9 33 33 H 1.09002 * 109.46653 * 60.00124 * 14 12 11 34 34 H 1.09001 * 109.46938 * 300.00217 * 14 12 11 35 35 H 1.08001 * 126.41179 * 0.02562 * 16 15 14 36 36 H 1.08000 * 119.69466 * 359.97438 * 18 17 16 37 37 H 1.07995 * 120.16246 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0012 12 16 2.6592 -6.3657 -0.0019 13 8 3.4188 -6.3389 -1.2026 14 6 1.5810 -7.8246 -0.0003 15 6 2.4250 -9.0730 -0.0014 16 6 2.8653 -9.7261 -1.0994 17 7 3.5929 -10.8006 -0.6659 18 6 4.2613 -11.7909 -1.3276 19 6 4.9143 -12.7552 -0.6442 20 17 5.7517 -14.0086 -1.5052 21 6 4.9136 -12.7521 0.7614 22 6 4.2512 -11.7708 1.4327 23 17 4.2386 -11.7509 3.1686 24 6 3.5741 -10.7711 0.7040 25 7 2.8627 -9.7183 1.0822 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8727 -3.6046 0.8878 30 1 2.8714 -3.6039 -0.8922 31 1 0.8529 -5.0446 -0.8905 32 1 0.8548 -5.0449 0.8895 33 1 0.9510 -7.8116 -0.8896 34 1 0.9528 -7.8110 0.8904 35 1 2.6786 -9.4509 -2.1269 36 1 4.2671 -11.8032 -2.4075 37 1 5.4361 -13.5246 1.3059 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097083684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:42 Heat of formation + Delta-G solvation = 30.321984 kcal Electronic energy + Delta-G solvation = -23177.336457 eV Core-core repulsion = 19327.389636 eV Total energy + Delta-G solvation = -3849.946820 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 360.021 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.40711 -38.61385 -37.38461 -36.79416 -35.49702 -34.42004 -33.99634 -32.08986 -32.01514 -29.67694 -28.05554 -27.40743 -24.06404 -23.50768 -23.38180 -21.34473 -20.20775 -18.71221 -17.86175 -17.35911 -16.79537 -16.68921 -16.26869 -15.81550 -15.15677 -15.00843 -14.85194 -14.48994 -14.39564 -14.02339 -13.64954 -13.32042 -13.26551 -13.07925 -12.98236 -12.37941 -12.14069 -11.93033 -11.85952 -11.74251 -11.49676 -11.36410 -10.84450 -10.82912 -10.77986 -10.70598 -10.59929 -10.25492 -9.78051 -9.48626 -9.15950 -8.86733 -8.42979 -8.34694 -7.94130 -5.99819 -4.02439 -0.14526 0.49399 0.86735 1.47025 1.55470 2.20023 2.35418 2.76166 2.87011 3.34659 3.38585 3.38935 3.41668 3.84275 3.92006 3.96138 4.27814 4.46796 4.54363 4.68434 4.88594 4.95108 5.09949 5.27023 5.35743 5.47224 5.50119 5.60357 5.61761 6.06705 6.20815 6.33547 6.51841 6.70882 7.05131 7.29550 7.66214 7.78987 7.99475 8.41367 9.04235 9.61678 11.11326 Molecular weight = 360.02amu Principal moments of inertia in cm(-1) A = 0.021018 B = 0.001709 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.875053 B =16378.238868 C =16964.157763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.093 4.093 11 C -0.433 4.433 12 S 1.241 4.759 13 O -0.844 6.844 14 C -0.377 4.377 15 C 0.092 3.908 16 C -0.065 4.065 17 N -0.353 5.353 18 C 0.081 3.919 19 C -0.059 4.059 20 Cl -0.025 7.025 21 C -0.090 4.090 22 C 0.018 3.982 23 Cl -0.009 7.009 24 C 0.218 3.782 25 N -0.452 5.452 26 H 0.261 0.739 27 H 0.014 0.986 28 H 0.020 0.980 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.138 0.862 35 H 0.191 0.809 36 H 0.179 0.821 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.510 -32.661 2.117 33.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.132 4.132 11 C -0.572 4.572 12 S 1.440 4.560 13 O -0.839 6.839 14 C -0.511 4.511 15 C -0.040 4.040 16 C -0.197 4.197 17 N -0.027 5.027 18 C -0.042 4.042 19 C -0.089 4.089 20 Cl 0.004 6.996 21 C -0.115 4.115 22 C -0.012 4.012 23 Cl 0.020 6.980 24 C -0.027 4.027 25 N -0.173 5.173 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.121 0.879 34 H 0.156 0.844 35 H 0.208 0.792 36 H 0.196 0.804 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.214 -32.366 2.927 33.779 hybrid contribution -0.847 0.543 -2.732 2.912 sum 8.367 -31.823 0.195 32.905 Atomic orbital electron populations 1.69951 1.06062 1.26730 1.50794 1.25025 0.94870 0.99284 0.95284 0.86643 0.79576 0.83019 0.78686 1.20268 1.21304 1.20113 1.21240 0.93127 0.91049 1.50726 0.92586 1.19095 0.93800 0.90865 0.97380 1.21317 0.98980 0.91802 1.01140 1.27682 1.11577 1.10680 1.07307 1.71121 0.87731 0.85136 1.11991 1.93078 1.55878 1.83842 1.51085 1.26248 1.09022 1.06926 1.08928 1.19915 0.99533 0.96699 0.87865 1.22635 1.04451 0.90823 1.01807 1.42550 1.33540 1.18505 1.08083 1.21404 0.95348 0.88106 0.99364 1.19764 1.02534 0.94582 0.92034 1.98419 1.75850 1.49442 1.75935 1.20809 0.99934 0.98996 0.91770 1.19343 1.00125 0.94483 0.87255 1.98426 1.97009 1.97905 1.04647 1.20286 1.03664 0.98371 0.80341 1.70699 1.13350 1.04510 1.28692 0.92948 0.96743 0.96171 0.92051 0.92837 0.89978 0.86597 0.87902 0.84410 0.79210 0.80431 0.81972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 10 C -0.09 -1.90 5.16 -26.73 -0.14 -2.04 16 11 C -0.43 -6.71 5.92 37.16 0.22 -6.49 16 12 S 1.24 16.22 13.14 -107.50 -1.41 14.81 16 13 O -0.84 -15.71 18.14 -35.23 -0.64 -16.35 16 14 C -0.38 -4.00 6.46 36.00 0.23 -3.77 16 15 C 0.09 1.11 6.32 -82.98 -0.52 0.58 16 16 C -0.07 -0.71 11.66 -16.43 -0.19 -0.90 16 17 N -0.35 -3.54 2.95 -62.59 -0.18 -3.72 16 18 C 0.08 0.58 10.70 -16.58 -0.18 0.40 16 19 C -0.06 -0.38 6.28 -39.85 -0.25 -0.63 16 20 Cl -0.03 -0.13 28.94 -51.86 -1.50 -1.63 16 21 C -0.09 -0.60 9.64 -39.48 -0.38 -0.98 16 22 C 0.02 0.16 6.34 -39.29 -0.25 -0.09 16 23 Cl -0.01 -0.08 28.98 -51.86 -1.50 -1.58 16 24 C 0.22 2.45 7.63 -156.04 -1.19 1.26 16 25 N -0.45 -5.70 11.32 -8.99 -0.10 -5.80 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.12 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 34 H 0.14 1.18 8.14 -51.92 -0.42 0.75 16 35 H 0.19 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -36.55 368.61 -11.46 -48.01 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -4.19 Total: -4.01 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -3.20 Total: -25.80 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.45 Total: -35.77 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.64 Total: -16.35 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 16.22 SS G_CDS: -1.41 Total: 14.81 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -3.00 Total: -3.22 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.55 -11.46 -48.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097083684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.333 kcal (2) G-P(sol) polarization free energy of solvation -36.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds