Wall clock time and date at job start Tue Mar 31 2020 05:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99570 * 2 1 4 4 H 1.48505 * 109.47096 * 239.99867 * 3 2 1 5 5 H 1.48496 * 109.47622 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46877 * 120.00702 * 3 2 1 7 7 C 1.37873 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00069 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99951 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47418 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47371 * 179.97438 * 10 9 7 12 12 S 1.81392 * 109.47163 * 180.02562 * 11 10 9 13 13 O 1.42101 * 109.47068 * 296.38974 * 12 11 10 14 14 C 1.81402 * 103.00151 * 179.97438 * 12 11 10 15 15 C 1.50697 * 109.47304 * 179.97438 * 14 12 11 16 16 C 1.35127 * 125.69388 * 270.01813 * 15 14 12 17 17 N 1.36818 * 107.18209 * 179.97438 * 16 15 14 18 18 C 1.36577 * 132.54873 * 179.97438 * 17 16 15 19 19 C 1.35034 * 120.61131 * 180.02562 * 18 17 16 20 20 Cl 1.73605 * 119.85573 * 179.72828 * 19 18 17 21 21 C 1.40552 * 120.28775 * 0.02562 * 19 18 17 22 22 C 1.36103 * 119.67396 * 359.97438 * 21 19 18 23 23 Cl 1.73604 * 120.33288 * 179.97438 * 22 21 19 24 24 C 1.37031 * 107.00618 * 0.02562 * 17 16 15 25 25 N 1.32575 * 108.04298 * 359.97438 * 24 17 16 26 26 H 0.96999 * 120.00190 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.47127 * 59.99992 * 9 7 2 28 28 H 1.09002 * 109.47264 * 300.00059 * 9 7 2 29 29 H 1.09006 * 109.46699 * 60.00071 * 10 9 7 30 30 H 1.09002 * 109.47230 * 300.00421 * 10 9 7 31 31 H 1.08995 * 109.46703 * 60.00112 * 11 10 9 32 32 H 1.08997 * 109.46900 * 300.00182 * 11 10 9 33 33 H 1.09002 * 109.46653 * 60.00124 * 14 12 11 34 34 H 1.09001 * 109.46938 * 300.00217 * 14 12 11 35 35 H 1.08001 * 126.41179 * 0.02562 * 16 15 14 36 36 H 1.08000 * 119.69466 * 359.97438 * 18 17 16 37 37 H 1.07995 * 120.16246 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0012 12 16 2.6592 -6.3657 -0.0019 13 8 3.4188 -6.3389 -1.2026 14 6 1.5810 -7.8246 -0.0003 15 6 2.4250 -9.0730 -0.0014 16 6 2.8653 -9.7261 -1.0994 17 7 3.5929 -10.8006 -0.6659 18 6 4.2613 -11.7909 -1.3276 19 6 4.9143 -12.7552 -0.6442 20 17 5.7517 -14.0086 -1.5052 21 6 4.9136 -12.7521 0.7614 22 6 4.2512 -11.7708 1.4327 23 17 4.2386 -11.7509 3.1686 24 6 3.5741 -10.7711 0.7040 25 7 2.8627 -9.7183 1.0822 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8727 -3.6046 0.8878 30 1 2.8714 -3.6039 -0.8922 31 1 0.8529 -5.0446 -0.8905 32 1 0.8548 -5.0449 0.8895 33 1 0.9510 -7.8116 -0.8896 34 1 0.9528 -7.8110 0.8904 35 1 2.6786 -9.4509 -2.1269 36 1 4.2671 -11.8032 -2.4075 37 1 5.4361 -13.5246 1.3059 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097083684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:41 Heat of formation + Delta-G solvation = 8.128337 kcal Electronic energy + Delta-G solvation = -23178.298845 eV Core-core repulsion = 19327.389636 eV Total energy + Delta-G solvation = -3850.909209 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 360.021 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.13131 -39.22846 -37.96320 -37.37553 -36.80460 -36.28182 -34.67246 -34.00467 -32.86156 -30.35197 -29.45584 -28.65489 -25.40885 -24.62644 -24.16098 -22.43287 -21.70825 -19.38552 -18.74221 -18.44868 -18.24894 -17.45318 -17.39097 -16.62861 -16.45801 -16.24886 -16.04819 -15.68419 -15.61444 -14.86929 -14.49685 -14.29548 -14.28001 -14.07178 -13.83590 -13.70167 -13.55166 -13.33962 -12.97504 -12.66851 -12.60793 -12.50018 -12.35750 -12.32928 -12.09580 -11.81826 -11.57379 -11.44484 -11.39732 -11.29996 -10.91183 -10.54742 -9.84681 -9.16476 -9.01989 -8.19841 -6.31121 -0.75675 -0.17645 0.28763 0.43663 0.97182 1.40273 1.43381 1.51254 1.53899 1.57551 1.77606 2.06755 2.41442 2.65090 2.89880 3.12833 3.24828 3.38373 3.59046 3.82192 4.00893 4.09462 4.16689 4.23557 4.32003 4.49978 4.55362 4.65703 4.72754 4.88707 4.96276 5.18474 5.20955 5.28151 5.51172 5.64547 5.72090 5.84920 6.24540 6.50808 6.85336 7.37927 8.91307 Molecular weight = 360.02amu Principal moments of inertia in cm(-1) A = 0.021018 B = 0.001709 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.875053 B =16378.238868 C =16964.157763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.089 4.089 11 C -0.437 4.437 12 S 1.290 4.710 13 O -0.901 6.901 14 C -0.364 4.364 15 C 0.068 3.932 16 C -0.075 4.075 17 N -0.356 5.356 18 C 0.077 3.923 19 C -0.057 4.057 20 Cl -0.009 7.009 21 C -0.069 4.069 22 C -0.006 4.006 23 Cl -0.011 7.011 24 C 0.206 3.794 25 N -0.479 5.479 26 H 0.264 0.736 27 H -0.017 1.017 28 H 0.008 0.992 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.112 0.888 34 H 0.163 0.837 35 H 0.205 0.795 36 H 0.205 0.795 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.707 -34.372 2.358 35.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.587 4.587 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.127 4.127 11 C -0.574 4.574 12 S 1.491 4.509 13 O -0.896 6.896 14 C -0.501 4.501 15 C -0.064 4.064 16 C -0.207 4.207 17 N -0.029 5.029 18 C -0.046 4.046 19 C -0.087 4.087 20 Cl 0.020 6.980 21 C -0.093 4.093 22 C -0.035 4.035 23 Cl 0.018 6.982 24 C -0.039 4.039 25 N -0.200 5.200 26 H 0.073 0.927 27 H 0.001 0.999 28 H 0.026 0.974 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.162 0.838 33 H 0.131 0.869 34 H 0.181 0.819 35 H 0.222 0.778 36 H 0.222 0.778 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 10.430 -34.053 3.162 35.754 hybrid contribution -1.193 0.810 -2.834 3.179 sum 9.237 -33.243 0.328 34.504 Atomic orbital electron populations 1.70079 1.07705 1.27837 1.51566 1.25979 0.95828 1.03334 0.94703 0.85518 0.78321 0.78121 0.79211 1.19700 1.20698 1.18677 1.21729 0.93652 0.92583 1.50736 0.92229 1.19025 0.94320 0.92597 0.95181 1.21112 0.98036 0.92461 1.01136 1.27665 1.11989 1.09557 1.08191 1.70547 0.86280 0.84440 1.09668 1.92974 1.58524 1.85029 1.53088 1.26062 1.08514 1.04721 1.10796 1.20075 1.00579 0.97386 0.88342 1.22906 1.04455 0.91061 1.02271 1.42646 1.33574 1.18821 1.07878 1.21931 0.94582 0.87340 1.00706 1.19871 1.02072 0.94660 0.92092 1.98435 1.75384 1.48573 1.75571 1.21158 0.97944 0.98228 0.92018 1.19448 1.01593 0.95151 0.87354 1.98419 1.97121 1.97952 1.04713 1.20636 1.03613 0.98506 0.81178 1.70632 1.14558 1.05531 1.29281 0.92745 0.99871 0.97355 0.90042 0.94849 0.91074 0.83841 0.86900 0.81878 0.77830 0.77824 0.79427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 3 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.55 -31.88 9.11 25.60 0.23 -31.65 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.09 -3.67 5.16 30.59 0.16 -3.51 16 11 C -0.44 -13.41 5.92 71.98 0.43 -12.98 16 12 S 1.29 32.97 13.14 -56.49 -0.74 32.23 16 13 O -0.90 -33.77 18.14 -148.98 -2.70 -36.47 16 14 C -0.36 -7.23 6.46 71.23 0.46 -6.77 16 15 C 0.07 1.58 6.32 41.59 0.26 1.84 16 16 C -0.07 -1.55 11.66 83.20 0.97 -0.58 16 17 N -0.36 -6.67 2.95 -351.95 -1.04 -7.71 16 18 C 0.08 0.94 10.70 83.22 0.89 1.83 16 19 C -0.06 -0.59 6.28 22.10 0.14 -0.45 16 20 Cl -0.01 -0.07 28.94 -2.72 -0.08 -0.15 16 21 C -0.07 -0.77 9.64 22.34 0.22 -0.55 16 22 C -0.01 -0.09 6.34 22.46 0.14 0.05 16 23 Cl -0.01 -0.18 28.98 -2.72 -0.08 -0.26 16 24 C 0.21 4.44 7.63 134.14 1.02 5.46 16 25 N -0.48 -11.76 11.32 -182.35 -2.06 -13.83 16 26 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 27 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 28 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.08 2.99 8.14 -2.38 -0.02 2.97 16 30 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.14 3.55 8.14 -2.39 -0.02 3.53 16 33 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.16 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.20 3.39 8.06 -2.91 -0.02 3.36 16 36 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -80.80 368.61 2.24 -78.56 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: 1.10 Total: 2.91 kcal Atomic # 6 Polarization: -50.83 SS G_CDS: 5.53 Total: -45.30 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.82 Total: -78.36 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -2.70 Total: -36.47 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 32.97 SS G_CDS: -0.74 Total: 32.23 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.16 Total: -0.41 kcal Total: -80.80 2.24 -78.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097083684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.685 kcal (2) G-P(sol) polarization free energy of solvation -80.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds