Wall clock time and date at job start Tue Mar 31 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99821 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99989 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.47004 * 179.97438 * 11 10 9 13 13 O 1.42108 * 109.46797 * 63.60985 * 12 11 10 14 14 C 1.81393 * 103.00232 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.47513 * 179.97438 * 14 12 11 16 16 C 1.35126 * 125.69785 * 269.72458 * 15 14 12 17 17 N 1.36804 * 107.18443 * 179.89881 * 16 15 14 18 18 C 1.36584 * 132.55400 * 180.02562 * 17 16 15 19 19 C 1.35042 * 120.61512 * 180.31051 * 18 17 16 20 20 Cl 1.73596 * 119.85706 * 179.97438 * 19 18 17 21 21 C 1.40547 * 120.28114 * 359.97438 * 19 18 17 22 22 C 1.36105 * 119.68184 * 0.02562 * 21 19 18 23 23 Cl 1.73603 * 120.33231 * 179.97438 * 22 21 19 24 24 C 1.37033 * 107.00944 * 0.35464 * 17 16 15 25 25 N 1.32582 * 108.04062 * 359.77719 * 24 17 16 26 26 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 28 28 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 29 29 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 30 30 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 31 31 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 32 32 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 33 33 H 1.09001 * 109.47259 * 300.00509 * 14 12 11 34 34 H 1.09010 * 109.47052 * 60.00011 * 14 12 11 35 35 H 1.08003 * 126.40523 * 0.02562 * 16 15 14 36 36 H 1.07997 * 119.69360 * 0.28894 * 18 17 16 37 37 H 1.08003 * 120.15819 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 16 2.6589 -6.3659 -0.0019 13 8 3.4194 -6.3396 1.1982 14 6 1.5807 -7.8246 -0.0019 15 6 2.4246 -9.0732 -0.0031 16 6 2.8610 -9.7289 -1.1011 17 7 3.5914 -10.8014 -0.6678 18 6 4.2589 -11.7924 -1.3295 19 6 4.9107 -12.7576 -0.6461 20 17 5.7522 -14.0082 -1.5072 21 6 4.9106 -12.7540 0.7594 22 6 4.2492 -11.7720 1.4308 23 17 4.2375 -11.7516 3.1667 24 6 3.5721 -10.7724 0.7021 25 7 2.8612 -9.7192 1.0805 26 1 -0.4851 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8719 -3.6045 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 0.8533 -5.0451 0.8886 32 1 0.8538 -5.0445 -0.8914 33 1 0.9518 -7.8116 0.8883 34 1 0.9512 -7.8112 -0.8917 35 1 2.6706 -9.4559 -2.1286 36 1 4.2652 -11.8043 -2.4094 37 1 5.4322 -13.5272 1.3040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097083685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:46 Heat of formation + Delta-G solvation = 30.691488 kcal Electronic energy + Delta-G solvation = -23185.914539 eV Core-core repulsion = 19335.983741 eV Total energy + Delta-G solvation = -3849.930797 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 360.021 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.39127 -38.60190 -37.36061 -36.77942 -35.41130 -34.41598 -33.98091 -32.07430 -32.01279 -29.66572 -28.04169 -27.40116 -24.06346 -23.48672 -23.37834 -21.32476 -20.20485 -18.72576 -17.79917 -17.33917 -16.79599 -16.64868 -16.26758 -15.79774 -15.12722 -15.01410 -14.84449 -14.45092 -14.39029 -14.02074 -13.63176 -13.31942 -13.22822 -13.05556 -12.96490 -12.37642 -12.11442 -11.91038 -11.85414 -11.72680 -11.45924 -11.35473 -10.85938 -10.81847 -10.78204 -10.66746 -10.49585 -10.21385 -9.78228 -9.48493 -9.14692 -8.84228 -8.41464 -8.35103 -7.96423 -6.00076 -4.02586 -0.13169 0.50224 0.88132 1.52148 1.58098 2.20829 2.35530 2.79347 2.90952 3.32585 3.38913 3.43280 3.45734 3.83520 3.90531 4.04200 4.25061 4.46688 4.58039 4.65227 4.91375 4.94520 5.10321 5.29593 5.35629 5.48719 5.50011 5.60884 5.61848 6.09241 6.20981 6.35303 6.52444 6.71385 7.05428 7.36903 7.66441 7.79193 7.99423 8.41322 9.04363 9.61593 11.11122 Molecular weight = 360.02amu Principal moments of inertia in cm(-1) A = 0.021320 B = 0.001708 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.010740 B =16386.530276 C =16935.041656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.093 4.093 11 C -0.435 4.435 12 S 1.237 4.763 13 O -0.832 6.832 14 C -0.382 4.382 15 C 0.093 3.907 16 C -0.073 4.073 17 N -0.354 5.354 18 C 0.080 3.920 19 C -0.058 4.058 20 Cl -0.025 7.025 21 C -0.092 4.092 22 C 0.019 3.981 23 Cl -0.010 7.010 24 C 0.218 3.782 25 N -0.452 5.452 26 H 0.260 0.740 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.134 0.866 35 H 0.201 0.799 36 H 0.181 0.819 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.561 -32.625 -7.820 34.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.574 4.574 12 S 1.436 4.564 13 O -0.827 6.827 14 C -0.516 4.516 15 C -0.040 4.040 16 C -0.204 4.204 17 N -0.028 5.028 18 C -0.043 4.043 19 C -0.089 4.089 20 Cl 0.003 6.997 21 C -0.117 4.117 22 C -0.011 4.011 23 Cl 0.019 6.981 24 C -0.027 4.027 25 N -0.172 5.172 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.033 0.967 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.153 0.847 35 H 0.218 0.782 36 H 0.198 0.802 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.270 -32.330 -6.935 34.341 hybrid contribution -0.859 0.553 1.063 1.475 sum 8.411 -31.777 -5.872 33.392 Atomic orbital electron populations 1.69962 1.06062 1.26614 1.50896 1.25029 0.94869 0.99298 0.95303 0.86582 0.79896 0.83378 0.78103 1.20587 1.21253 1.19845 1.21281 0.93160 0.91045 1.50571 0.92541 1.19099 0.93813 0.90893 0.97379 1.21312 0.98965 0.91851 1.01098 1.27703 1.11656 1.10749 1.07276 1.70653 0.87771 0.85269 1.12720 1.93161 1.55571 1.83424 1.50524 1.26321 1.09237 1.07174 1.08860 1.19996 0.99326 0.96736 0.87931 1.22612 1.05046 0.91177 1.01610 1.42603 1.33547 1.18635 1.07971 1.21390 0.95546 0.88103 0.99289 1.19766 1.02529 0.94620 0.91970 1.98418 1.75633 1.49744 1.75873 1.20800 1.00044 0.98990 0.91879 1.19391 0.99987 0.94474 0.87288 1.98431 1.96976 1.97889 1.04811 1.20313 1.03691 0.98224 0.80454 1.70787 1.12981 1.04193 1.29218 0.93009 0.96218 0.96701 0.92802 0.92147 0.89908 0.86745 0.87612 0.84747 0.78210 0.80199 0.82058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.68 4.97 -27.88 -0.14 0.55 16 10 C -0.09 -1.89 5.16 -26.73 -0.14 -2.03 16 11 C -0.44 -6.72 5.92 37.16 0.22 -6.50 16 12 S 1.24 15.98 13.14 -107.50 -1.41 14.57 16 13 O -0.83 -16.80 18.14 -35.23 -0.64 -17.44 16 14 C -0.38 -4.03 6.45 36.01 0.23 -3.80 16 15 C 0.09 1.11 6.32 -82.98 -0.52 0.58 16 16 C -0.07 -0.60 11.66 -16.44 -0.19 -0.79 16 17 N -0.35 -3.19 2.95 -62.59 -0.18 -3.38 16 18 C 0.08 0.48 10.70 -16.57 -0.18 0.30 16 19 C -0.06 -0.35 6.28 -39.85 -0.25 -0.61 16 20 Cl -0.03 -0.12 28.94 -51.86 -1.50 -1.62 16 21 C -0.09 -0.66 9.64 -39.48 -0.38 -1.04 16 22 C 0.02 0.19 6.34 -39.29 -0.25 -0.06 16 23 Cl -0.01 -0.11 28.98 -51.86 -1.50 -1.61 16 24 C 0.22 2.65 7.63 -156.03 -1.19 1.46 16 25 N -0.45 -6.73 11.32 -8.99 -0.10 -6.83 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.40 8.14 -51.92 -0.42 0.97 16 32 H 0.11 1.41 8.14 -51.92 -0.42 0.99 16 33 H 0.11 1.31 8.14 -51.92 -0.42 0.89 16 34 H 0.13 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.20 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.18 0.43 8.06 -52.49 -0.42 0.00 16 37 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -39.87 368.61 -11.46 -51.33 By element: Atomic # 1 Polarization: -1.27 SS G_CDS: -4.19 Total: -5.46 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -3.20 Total: -25.63 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.45 Total: -36.46 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.64 Total: -17.44 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 15.98 SS G_CDS: -1.41 Total: 14.57 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -3.00 Total: -3.24 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.87 -11.46 -51.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097083685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.022 kcal (2) G-P(sol) polarization free energy of solvation -39.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds