Wall clock time and date at job start Tue Mar 31 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99821 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99989 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.47004 * 179.97438 * 11 10 9 13 13 O 1.42108 * 109.46797 * 63.60985 * 12 11 10 14 14 C 1.81393 * 103.00232 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.47513 * 179.97438 * 14 12 11 16 16 C 1.35126 * 125.69785 * 269.72458 * 15 14 12 17 17 N 1.36804 * 107.18443 * 179.89881 * 16 15 14 18 18 C 1.36584 * 132.55400 * 180.02562 * 17 16 15 19 19 C 1.35042 * 120.61512 * 180.31051 * 18 17 16 20 20 Cl 1.73596 * 119.85706 * 179.97438 * 19 18 17 21 21 C 1.40547 * 120.28114 * 359.97438 * 19 18 17 22 22 C 1.36105 * 119.68184 * 0.02562 * 21 19 18 23 23 Cl 1.73603 * 120.33231 * 179.97438 * 22 21 19 24 24 C 1.37033 * 107.00944 * 0.35464 * 17 16 15 25 25 N 1.32582 * 108.04062 * 359.77719 * 24 17 16 26 26 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 28 28 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 29 29 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 30 30 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 31 31 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 32 32 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 33 33 H 1.09001 * 109.47259 * 300.00509 * 14 12 11 34 34 H 1.09010 * 109.47052 * 60.00011 * 14 12 11 35 35 H 1.08003 * 126.40523 * 0.02562 * 16 15 14 36 36 H 1.07997 * 119.69360 * 0.28894 * 18 17 16 37 37 H 1.08003 * 120.15819 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 16 2.6589 -6.3659 -0.0019 13 8 3.4194 -6.3396 1.1982 14 6 1.5807 -7.8246 -0.0019 15 6 2.4246 -9.0732 -0.0031 16 6 2.8610 -9.7289 -1.1011 17 7 3.5914 -10.8014 -0.6678 18 6 4.2589 -11.7924 -1.3295 19 6 4.9107 -12.7576 -0.6461 20 17 5.7522 -14.0082 -1.5072 21 6 4.9106 -12.7540 0.7594 22 6 4.2492 -11.7720 1.4308 23 17 4.2375 -11.7516 3.1667 24 6 3.5721 -10.7724 0.7021 25 7 2.8612 -9.7192 1.0805 26 1 -0.4851 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8719 -3.6045 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 0.8533 -5.0451 0.8886 32 1 0.8538 -5.0445 -0.8914 33 1 0.9518 -7.8116 0.8883 34 1 0.9512 -7.8112 -0.8917 35 1 2.6706 -9.4559 -2.1286 36 1 4.2652 -11.8043 -2.4094 37 1 5.4322 -13.5272 1.3040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097083685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:45 Heat of formation + Delta-G solvation = 3.930735 kcal Electronic energy + Delta-G solvation = -23187.074972 eV Core-core repulsion = 19335.983741 eV Total energy + Delta-G solvation = -3851.091231 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 360.021 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.06282 -39.18389 -37.98342 -37.33573 -36.78834 -36.28150 -34.64651 -34.00476 -32.80751 -30.31591 -29.44864 -28.59085 -25.40571 -24.56585 -24.11509 -22.39531 -21.67371 -19.34609 -18.67350 -18.38780 -18.23144 -17.42968 -17.34228 -16.62184 -16.39577 -16.26018 -16.01830 -15.60159 -15.52608 -14.87690 -14.44103 -14.32945 -14.27028 -14.02467 -13.81996 -13.73107 -13.49710 -13.33198 -12.95807 -12.68190 -12.57917 -12.48551 -12.35732 -12.32292 -12.11645 -11.82572 -11.57751 -11.45016 -11.29658 -11.26399 -10.89274 -10.55182 -9.78849 -9.15534 -9.00981 -8.20334 -6.31506 -0.71012 -0.10531 0.34003 0.50897 0.98681 1.39766 1.41646 1.52616 1.61569 1.65266 1.83638 2.12348 2.41135 2.80096 2.90448 3.12415 3.32387 3.46866 3.60987 3.90033 4.09552 4.14897 4.21801 4.25496 4.40499 4.59992 4.60468 4.65992 4.73577 4.89216 5.03090 5.18898 5.21167 5.35380 5.51207 5.72128 5.77843 5.84844 6.24357 6.65922 6.85203 7.37633 8.91042 Molecular weight = 360.02amu Principal moments of inertia in cm(-1) A = 0.021320 B = 0.001708 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.010740 B =16386.530276 C =16935.041656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.089 4.089 11 C -0.439 4.439 12 S 1.304 4.696 13 O -0.913 6.913 14 C -0.366 4.366 15 C 0.046 3.954 16 C -0.039 4.039 17 N -0.357 5.357 18 C 0.095 3.905 19 C -0.067 4.067 20 Cl -0.008 7.008 21 C -0.069 4.069 22 C -0.017 4.017 23 Cl -0.032 7.032 24 C 0.195 3.805 25 N -0.515 5.515 26 H 0.264 0.736 27 H 0.013 0.987 28 H -0.022 1.022 29 H 0.025 0.975 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.153 0.847 33 H 0.082 0.918 34 H 0.191 0.809 35 H 0.258 0.742 36 H 0.225 0.775 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.514 -34.232 -11.575 37.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.127 4.127 11 C -0.576 4.576 12 S 1.505 4.495 13 O -0.908 6.908 14 C -0.503 4.503 15 C -0.086 4.086 16 C -0.171 4.171 17 N -0.030 5.030 18 C -0.028 4.028 19 C -0.097 4.097 20 Cl 0.021 6.979 21 C -0.093 4.093 22 C -0.047 4.047 23 Cl -0.003 7.003 24 C -0.050 4.050 25 N -0.236 5.236 26 H 0.073 0.927 27 H 0.031 0.969 28 H -0.003 1.003 29 H 0.044 0.956 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.171 0.829 33 H 0.101 0.899 34 H 0.208 0.792 35 H 0.274 0.726 36 H 0.241 0.759 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 10.240 -33.904 -10.694 36.996 hybrid contribution -1.161 0.806 2.131 2.557 sum 9.079 -33.098 -8.564 35.373 Atomic orbital electron populations 1.70087 1.07699 1.27772 1.51645 1.25981 0.95828 1.03341 0.94716 0.85457 0.78420 0.78402 0.78848 1.18903 1.20908 1.19338 1.21757 0.93636 0.92594 1.50620 0.92273 1.19031 0.94330 0.92624 0.95171 1.21117 0.98016 0.92523 1.01091 1.27711 1.12058 1.09691 1.08132 1.69582 0.85924 0.84302 1.09673 1.93026 1.59468 1.85011 1.53328 1.26197 1.08511 1.05047 1.10553 1.20272 1.01538 0.97944 0.88805 1.23412 1.01819 0.89069 1.02765 1.42830 1.33754 1.19432 1.07016 1.22104 0.93288 0.86347 1.01030 1.19854 1.02909 0.95366 0.91567 1.98434 1.75234 1.48954 1.75274 1.21103 0.97718 0.97770 0.92739 1.19519 1.02649 0.96030 0.86521 1.98409 1.97255 1.98042 1.06598 1.20468 1.04077 0.98218 0.82231 1.70656 1.15054 1.06177 1.31740 0.92747 0.96895 1.00337 0.95599 0.89359 0.92134 0.82860 0.89947 0.79165 0.72581 0.75852 0.80196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.55 -31.85 9.11 25.60 0.23 -31.61 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.09 -3.67 5.16 30.60 0.16 -3.51 16 11 C -0.44 -13.41 5.92 71.98 0.43 -12.98 16 12 S 1.30 32.77 13.14 -56.49 -0.74 32.03 16 13 O -0.91 -38.46 18.14 -148.98 -2.70 -41.16 16 14 C -0.37 -7.08 6.45 71.24 0.46 -6.62 16 15 C 0.05 1.02 6.32 41.59 0.26 1.28 16 16 C -0.04 -0.48 11.66 83.20 0.97 0.49 16 17 N -0.36 -5.39 2.95 -351.95 -1.04 -6.43 16 18 C 0.09 0.74 10.70 83.22 0.89 1.63 16 19 C -0.07 -0.61 6.28 22.10 0.14 -0.47 16 20 Cl -0.01 -0.05 28.94 -2.72 -0.08 -0.13 16 21 C -0.07 -0.88 9.64 22.34 0.22 -0.67 16 22 C -0.02 -0.36 6.34 22.46 0.14 -0.21 16 23 Cl -0.03 -0.73 28.98 -2.72 -0.08 -0.81 16 24 C 0.20 4.68 7.63 134.14 1.02 5.70 16 25 N -0.52 -15.65 11.32 -182.34 -2.06 -17.72 16 26 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 27 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 28 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 29 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.15 3.41 8.14 -2.39 -0.02 3.39 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.19 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.26 -0.16 8.06 -2.91 -0.02 -0.18 16 36 H 0.23 -0.32 8.06 -2.91 -0.02 -0.34 16 37 H 0.18 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -94.92 368.61 2.24 -92.68 By element: Atomic # 1 Polarization: -4.65 SS G_CDS: 1.10 Total: -3.55 kcal Atomic # 6 Polarization: -50.52 SS G_CDS: 5.53 Total: -44.99 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -2.82 Total: -80.96 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -2.70 Total: -41.16 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 32.77 SS G_CDS: -0.74 Total: 32.03 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.16 Total: -0.93 kcal Total: -94.92 2.24 -92.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097083685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.607 kcal (2) G-P(sol) polarization free energy of solvation -94.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds