Wall clock time and date at job start Tue Mar 31 2020 05:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 116.99834 * 2 1 4 4 C 1.38754 * 120.05324 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.94279 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05317 * 359.75248 * 5 4 3 7 7 C 1.38241 * 120.11291 * 0.50724 * 6 5 4 8 8 C 1.50705 * 119.97072 * 179.76377 * 7 6 5 9 9 H 1.08999 * 109.46490 * 199.72019 * 8 7 6 10 10 N 1.46496 * 109.47141 * 319.72623 * 8 7 6 11 11 C 1.34775 * 119.99490 * 205.00255 * 10 8 7 12 12 O 1.21693 * 120.00437 * 359.97438 * 11 10 8 13 13 C 1.46379 * 119.99865 * 180.02562 * 11 10 8 14 14 H 1.08003 * 119.99838 * 359.97438 * 13 11 10 15 15 C 1.40043 * 119.99993 * 180.02562 * 13 11 10 16 16 N 1.30671 * 120.00490 * 359.97438 * 15 13 11 17 17 Si 1.86808 * 119.99915 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47098 * 89.99594 * 17 15 13 19 19 H 1.48502 * 109.46835 * 209.99501 * 17 15 13 20 20 H 1.48494 * 109.46874 * 329.99656 * 17 15 13 21 21 C 1.50700 * 109.46838 * 79.72621 * 8 7 6 22 22 C 1.38172 * 120.01314 * 265.23063 * 21 8 7 23 23 C 1.38441 * 120.02969 * 180.25680 * 22 21 8 24 24 F 1.35096 * 119.97141 * 179.76434 * 23 22 21 25 25 C 1.38474 * 120.05476 * 359.74290 * 23 22 21 26 26 C 1.38129 * 120.03585 * 0.02562 * 25 23 22 27 27 C 1.38687 * 120.01658 * 84.99765 * 21 8 7 28 28 O 1.35950 * 120.02805 * 0.02562 * 27 21 8 29 29 C 1.42903 * 116.99607 * 179.72387 * 28 27 21 30 30 C 1.38165 * 120.05566 * 359.49292 * 7 6 5 31 31 H 1.08998 * 109.46864 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47097 * 299.99762 * 1 2 3 33 33 H 1.08999 * 109.47607 * 59.99903 * 1 2 3 34 34 H 1.07996 * 120.03154 * 0.02562 * 4 3 2 35 35 H 1.07997 * 119.97320 * 180.02562 * 5 4 3 36 36 H 1.07998 * 119.94028 * 180.27038 * 6 5 4 37 37 H 0.96996 * 120.00284 * 24.99450 * 10 8 7 38 38 H 0.97001 * 120.00418 * 180.02562 * 16 15 13 39 39 H 1.07996 * 119.98747 * 359.97438 * 22 21 8 40 40 H 1.08004 * 119.98300 * 179.97438 * 25 23 22 41 41 H 1.08001 * 120.01224 * 179.97438 * 26 25 23 42 42 H 1.09002 * 109.47382 * 59.99931 * 29 28 27 43 43 H 1.09001 * 109.46938 * 299.99918 * 29 28 27 44 44 H 1.09004 * 109.46926 * 180.02562 * 29 28 27 45 45 H 1.07998 * 120.02597 * 180.27868 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6759 0.0062 7 6 4.0559 2.5173 0.0003 8 6 5.5607 2.5985 0.0006 9 1 5.9755 1.6538 -0.3510 10 7 5.9915 3.6815 -0.8868 11 6 7.2172 3.6470 -1.4462 12 8 7.9662 2.7165 -1.2138 13 6 7.6479 4.7295 -2.3325 14 1 6.9833 5.5556 -2.5384 15 6 8.9213 4.6934 -2.9142 16 7 9.7252 3.6938 -2.6654 17 14 9.4707 6.0745 -4.0458 18 1 10.1378 7.1334 -3.2466 19 1 10.4227 5.5403 -5.0525 20 1 8.2883 6.6474 -4.7376 21 6 6.0487 2.8715 1.4000 22 6 6.3033 4.1685 1.8025 23 6 6.7567 4.4192 3.0863 24 9 7.0097 5.6875 3.4770 25 6 6.9506 3.3712 3.9703 26 6 6.6923 2.0740 3.5721 27 6 6.2379 1.8214 2.2860 28 8 5.9838 0.5451 1.8926 29 6 6.2065 -0.4870 2.8555 30 6 3.4311 1.2850 -0.0002 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 0.2127 2.3204 0.0014 35 1 1.3338 4.5114 0.0019 36 1 3.7920 4.6382 0.0111 37 1 5.3946 4.4233 -1.0719 38 1 10.6074 3.6690 -3.0681 39 1 6.1529 4.9867 1.1138 40 1 7.3047 3.5681 4.9715 41 1 6.8441 1.2569 4.2618 42 1 5.5712 -0.3164 3.7246 43 1 7.2523 -0.4779 3.1625 44 1 5.9664 -1.4541 2.4136 45 1 4.0207 0.3801 -0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:07 Heat of formation + Delta-G solvation = -98.025119 kcal Electronic energy + Delta-G solvation = -32453.811110 eV Core-core repulsion = 27930.901351 eV Total energy + Delta-G solvation = -4522.909759 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.48566 -40.43207 -39.77701 -38.15758 -36.97247 -36.65601 -34.05918 -32.39411 -31.06008 -30.61979 -29.86073 -29.43291 -27.43019 -27.13060 -26.56365 -24.99396 -22.67063 -22.08767 -21.86777 -20.75156 -19.42134 -18.07636 -17.89862 -17.18091 -16.68052 -16.62705 -16.13224 -15.76604 -15.73471 -15.64153 -15.27829 -15.09318 -14.57658 -14.46733 -14.23774 -14.10933 -13.79069 -13.67731 -13.27377 -12.98257 -12.74991 -12.57912 -12.49959 -12.31337 -12.17205 -11.87606 -11.70249 -11.50194 -11.42571 -11.11302 -11.06790 -10.95825 -10.76340 -10.62618 -10.56267 -10.44329 -10.20635 -8.87652 -8.77045 -8.62981 -8.10006 -7.76885 -7.64736 -7.58492 -6.17276 -4.63185 1.33500 1.51380 1.56015 1.59052 3.15980 3.22558 3.24419 3.26346 3.45222 3.81070 3.90183 4.11813 4.56592 4.60121 4.67387 4.81835 4.87332 4.94271 5.00529 5.04307 5.10185 5.15797 5.22230 5.25102 5.32083 5.40398 5.46626 5.52549 5.55736 5.59218 5.74747 5.81334 5.94160 6.06152 6.15372 6.26330 6.35401 6.39260 6.41921 6.53875 6.62268 6.76845 6.94936 7.01185 7.44615 7.45064 7.56175 7.87835 8.04133 8.31809 9.03834 9.49693 10.60648 10.78842 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.007764 B = 0.003959 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3605.571183 B = 7069.971157 C = 8704.516395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.122 3.878 4 C -0.214 4.214 5 C -0.082 4.082 6 C -0.144 4.144 7 C -0.032 4.032 8 C 0.239 3.761 9 H 0.105 0.895 10 N -0.758 5.758 11 C 0.556 3.444 12 O -0.571 6.571 13 C -0.543 4.543 14 H 0.068 0.932 15 C 0.089 3.911 16 N -0.766 5.766 17 Si 0.906 3.094 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.072 4.072 22 C -0.090 4.090 23 C 0.057 3.943 24 F -0.145 7.145 25 C -0.123 4.123 26 C -0.187 4.187 27 C 0.129 3.871 28 O -0.304 6.304 29 C 0.028 3.972 30 C -0.129 4.129 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.381 0.619 38 H 0.268 0.732 39 H 0.143 0.857 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.098 0.902 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.564 -4.628 10.855 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.077 3.923 4 C -0.233 4.233 5 C -0.100 4.100 6 C -0.163 4.163 7 C -0.033 4.033 8 C 0.132 3.868 9 H 0.123 0.877 10 N -0.413 5.413 11 C 0.360 3.640 12 O -0.453 6.453 13 C -0.580 4.580 14 H 0.086 0.914 15 C -0.131 4.131 16 N -0.394 5.394 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.074 4.074 22 C -0.109 4.109 23 C 0.037 3.963 24 F -0.124 7.124 25 C -0.142 4.142 26 C -0.205 4.205 27 C 0.083 3.917 28 O -0.217 6.217 29 C -0.068 4.068 30 C -0.148 4.148 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.215 0.785 38 H 0.079 0.921 39 H 0.161 0.839 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.778 -5.640 10.792 19.148 hybrid contribution -0.053 1.374 -0.225 1.393 sum -14.830 -4.266 10.566 18.703 Atomic orbital electron populations 1.22997 0.78888 1.03569 1.01156 1.86070 1.20944 1.27169 1.89010 1.18943 0.92175 0.83952 0.97245 1.21142 0.99573 0.92517 1.10033 1.20842 0.94397 0.96819 0.97928 1.20913 0.93599 0.98333 1.03411 1.19771 0.95064 0.92428 0.95990 1.18075 0.87626 0.95209 0.85896 0.87744 1.46386 1.19202 1.24189 1.51565 1.18241 0.78568 0.87274 0.79878 1.90622 1.52880 1.37283 1.64527 1.20844 1.00652 1.07165 1.29380 0.91413 1.25677 0.96106 0.95737 0.95584 1.70015 1.06617 1.27642 1.35149 0.86401 0.79027 0.81438 0.80076 1.19759 1.20492 1.18899 1.19544 1.01514 0.90346 0.96044 1.20827 0.98518 0.97487 0.94018 1.17517 1.05393 0.79048 0.94299 1.91456 1.92392 1.37194 1.91337 1.20765 1.02131 0.91597 0.99719 1.20925 1.06529 0.97250 0.95832 1.18765 0.96259 0.84285 0.92394 1.86133 1.82532 1.12785 1.40270 1.23036 1.00914 0.90086 0.92738 1.20289 0.91042 0.98458 1.05038 0.88539 0.92910 0.92801 0.85933 0.85923 0.85755 0.78546 0.92126 0.83880 0.85071 0.84899 0.92983 0.92727 0.88320 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.09 10.50 -19.45 -0.20 -4.29 16 3 C 0.12 1.71 6.69 -39.22 -0.26 1.45 16 4 C -0.21 -2.63 9.04 -39.43 -0.36 -2.98 16 5 C -0.08 -1.02 10.04 -39.60 -0.40 -1.42 16 6 C -0.14 -2.10 9.04 -39.56 -0.36 -2.46 16 7 C -0.03 -0.53 4.94 -104.65 -0.52 -1.04 16 8 C 0.24 4.72 2.10 -70.23 -0.15 4.57 16 9 H 0.10 2.38 6.98 -51.93 -0.36 2.01 16 10 N -0.76 -16.57 3.76 -57.48 -0.22 -16.79 16 11 C 0.56 15.46 7.70 -12.99 -0.10 15.36 16 12 O -0.57 -18.20 14.68 5.20 0.08 -18.12 16 13 C -0.54 -15.13 9.54 -35.63 -0.34 -15.47 16 14 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 15 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 16 N -0.77 -22.90 11.83 55.55 0.66 -22.24 16 17 Si 0.91 20.17 29.56 -169.99 -5.02 15.15 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 20 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 21 C -0.07 -1.36 5.00 -104.48 -0.52 -1.88 16 22 C -0.09 -1.66 9.30 -39.53 -0.37 -2.03 16 23 C 0.06 0.98 7.30 -39.42 -0.29 0.69 16 24 F -0.14 -2.50 17.27 2.25 0.04 -2.46 16 25 C -0.12 -1.84 10.02 -39.53 -0.40 -2.23 16 26 C -0.19 -2.72 9.04 -39.44 -0.36 -3.08 16 27 C 0.13 2.21 6.66 -39.24 -0.26 1.95 16 28 O -0.30 -4.84 9.63 -19.58 -0.19 -5.03 16 29 C 0.03 0.30 9.81 101.05 0.99 1.29 16 30 C -0.13 -2.05 9.61 -39.43 -0.38 -2.43 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 33 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 34 H 0.12 1.17 6.30 -52.49 -0.33 0.84 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.70 6.93 -52.49 -0.36 1.34 16 37 H 0.38 7.33 6.86 -40.82 -0.28 7.05 16 38 H 0.27 7.30 8.29 -40.82 -0.34 6.97 16 39 H 0.14 2.64 7.27 -52.49 -0.38 2.26 16 40 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 41 H 0.13 1.50 6.30 -52.49 -0.33 1.17 16 42 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 43 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.13 2.15 8.04 -52.49 -0.42 1.73 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -35.71 387.53 -7.48 -43.19 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.30 Total: 10.86 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -3.16 Total: -6.11 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.44 Total: -39.03 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.32 Total: -27.44 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.71 -7.48 -43.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.837 kcal (2) G-P(sol) polarization free energy of solvation -35.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds