Wall clock time and date at job start Tue Mar 31 2020 06:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35903 * 117.00115 * 2 1 4 4 C 1.38733 * 120.05848 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94486 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.05067 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94078 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47261 * 340.00727 * 7 6 5 9 9 N 1.46499 * 109.47402 * 220.00091 * 7 6 5 10 10 C 1.34774 * 119.99966 * 155.00155 * 9 7 6 11 11 O 1.21592 * 120.00301 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99902 * 179.97438 * 10 9 7 13 13 C 1.46498 * 119.99828 * 0.27942 * 12 10 9 14 14 C 1.46506 * 119.99873 * 179.97438 * 12 10 9 15 15 H 1.08995 * 109.47304 * 0.02562 * 14 12 10 16 16 C 1.52997 * 109.47021 * 240.00060 * 14 12 10 17 17 C 1.50704 * 109.46621 * 120.00429 * 14 12 10 18 18 H 1.07996 * 120.00373 * 359.97438 * 17 14 12 19 19 C 1.37877 * 119.99682 * 179.97438 * 17 14 12 20 20 N 1.31519 * 119.99993 * 0.02562 * 19 17 14 21 21 Si 1.86795 * 120.00107 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.47101 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47244 * 119.99846 * 21 19 17 24 24 H 1.48493 * 109.47383 * 240.00241 * 21 19 17 25 25 C 1.53008 * 109.47171 * 99.99803 * 7 6 5 26 26 F 1.39896 * 109.47440 * 179.97438 * 25 7 6 27 27 F 1.39903 * 109.47330 * 300.00708 * 25 7 6 28 28 F 1.39905 * 109.46632 * 60.00065 * 25 7 6 29 29 C 1.38262 * 120.11661 * 0.27319 * 6 5 4 30 30 C 1.38149 * 120.05586 * 359.45238 * 29 6 5 31 31 H 1.09001 * 109.47637 * 60.00322 * 1 2 3 32 32 H 1.09002 * 109.46875 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47374 * 299.99810 * 1 2 3 34 34 H 1.07999 * 120.02693 * 359.95597 * 4 3 2 35 35 H 1.07994 * 119.97452 * 180.02562 * 5 4 3 36 36 H 0.96999 * 119.99984 * 334.99628 * 9 7 6 37 37 H 1.08998 * 109.46661 * 269.71691 * 13 12 10 38 38 H 1.08993 * 109.47575 * 29.72405 * 13 12 10 39 39 H 1.09001 * 109.46870 * 149.72361 * 13 12 10 40 40 H 1.09001 * 109.47000 * 60.00883 * 16 14 12 41 41 H 1.09002 * 109.46917 * 180.02562 * 16 14 12 42 42 H 1.08995 * 109.47505 * 300.00396 * 16 14 12 43 43 H 0.97000 * 119.99941 * 179.97438 * 20 19 17 44 44 H 1.08002 * 119.97405 * 179.70360 * 29 6 5 45 45 H 1.07991 * 120.02957 * 180.27052 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9859 5.0186 -0.0016 8 1 5.0111 4.9040 0.3502 9 7 3.2645 5.9342 0.8857 10 6 3.9086 6.9775 1.4453 11 8 5.0883 7.1591 1.2133 12 7 3.2448 7.8202 2.2613 13 6 1.8247 7.5985 2.5447 14 6 3.9450 8.9540 2.8700 15 1 4.9866 8.9526 2.5488 16 6 3.8807 8.8345 4.3939 17 6 3.2884 10.2400 2.4388 18 1 2.4351 10.2154 1.7772 19 6 3.7770 11.4482 2.8889 20 7 4.8163 11.4783 3.6942 21 14 2.9636 13.0424 2.3539 22 1 1.8227 12.7381 1.4533 23 1 2.4689 13.7713 3.5495 24 1 3.9519 13.8851 1.6342 25 6 3.9948 5.5864 -1.4224 26 9 4.6293 6.8332 -1.4223 27 9 4.6836 4.7120 -2.2698 28 9 2.6788 5.7335 -1.8740 29 6 1.9210 3.6048 0.0041 30 6 1.2914 2.3751 -0.0011 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 4.0208 0.3800 -0.0002 35 1 5.1344 2.5752 -0.0019 36 1 2.3233 5.7897 1.0705 37 1 1.2202 8.1310 1.8104 38 1 1.6056 6.5322 2.4913 39 1 1.5916 7.9678 3.5435 40 1 4.3557 7.9043 4.7058 41 1 4.4013 9.6783 4.8468 42 1 2.8391 8.8360 4.7149 43 1 5.1603 12.3283 4.0106 44 1 1.3340 4.5114 0.0085 45 1 0.2129 2.3201 -0.0010 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097100286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:02 Heat of formation + Delta-G solvation = -177.128790 kcal Electronic energy + Delta-G solvation = -33702.451595 eV Core-core repulsion = 28692.289297 eV Total energy + Delta-G solvation = -5010.162298 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.85782 -47.42533 -47.24963 -40.62590 -39.65371 -38.10221 -35.71775 -34.69617 -32.90287 -31.47497 -31.11113 -29.26794 -28.15916 -27.20855 -26.17926 -25.18779 -23.74078 -23.11335 -21.75817 -20.96830 -19.42290 -18.62327 -18.29498 -18.24403 -17.76570 -17.35686 -16.58238 -16.38898 -16.11636 -15.77645 -15.27100 -14.98274 -14.61514 -14.47708 -14.25040 -14.13846 -14.05972 -13.78197 -13.71636 -13.48388 -13.41822 -13.34978 -13.18078 -13.10399 -12.75792 -12.60796 -12.42938 -12.17796 -11.85161 -11.56963 -11.54592 -11.37183 -11.17995 -11.05412 -10.80462 -10.68323 -10.23949 -10.15232 -9.46746 -9.35584 -9.15065 -9.09441 -8.55615 -8.41646 -7.59058 -6.05492 -4.12743 0.91188 1.00342 2.73595 2.86943 2.99749 3.27576 3.35865 3.39014 3.45064 3.75570 3.90542 4.12110 4.29902 4.37658 4.43303 4.51876 4.57238 4.69656 4.75207 4.75428 4.96565 5.03639 5.07456 5.20679 5.25904 5.34705 5.55160 5.65563 5.80787 5.95220 5.98695 6.13211 6.21431 6.33547 6.45667 6.68258 6.79687 6.96688 6.98560 7.12299 7.47453 7.70840 7.80230 8.06905 8.22822 8.63153 8.88085 9.19773 9.54063 10.99920 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.002740 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.930419 B =10218.133970 C =10908.625810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.138 3.862 4 C -0.150 4.150 5 C -0.047 4.047 6 C -0.146 4.146 7 C 0.179 3.821 8 H 0.135 0.865 9 N -0.744 5.744 10 C 0.699 3.301 11 O -0.580 6.580 12 N -0.603 5.603 13 C 0.088 3.912 14 C 0.272 3.728 15 H 0.066 0.934 16 C -0.147 4.147 17 C -0.523 4.523 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.898 3.102 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.436 3.564 26 F -0.162 7.162 27 F -0.184 7.184 28 F -0.185 7.185 29 C -0.054 4.054 30 C -0.206 4.206 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.399 0.601 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.012 0.988 41 H 0.095 0.905 42 H 0.029 0.971 43 H 0.262 0.738 44 H 0.129 0.871 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.074 -22.199 -6.544 24.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.092 3.908 4 C -0.169 4.169 5 C -0.066 4.066 6 C -0.147 4.147 7 C 0.069 3.931 8 H 0.153 0.847 9 N -0.404 5.404 10 C 0.400 3.600 11 O -0.457 6.457 12 N -0.338 5.338 13 C -0.057 4.057 14 C 0.172 3.828 15 H 0.084 0.916 16 C -0.206 4.206 17 C -0.562 4.562 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.379 3.621 26 F -0.143 7.143 27 F -0.166 7.166 28 F -0.167 7.167 29 C -0.073 4.073 30 C -0.225 4.225 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.237 0.763 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.031 0.969 41 H 0.113 0.887 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.147 0.853 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.011 -22.024 -6.580 24.342 hybrid contribution -1.331 1.155 -0.464 1.822 sum -9.342 -20.869 -7.045 23.925 Atomic orbital electron populations 1.23097 0.78123 1.04106 1.01615 1.86079 1.21630 1.26851 1.88402 1.19126 0.92449 0.84193 0.95002 1.20400 0.91350 0.98550 1.06576 1.20839 1.00281 0.90384 0.95048 1.19399 0.94022 0.92987 1.08247 1.20376 1.00974 0.86574 0.85129 0.84690 1.45314 1.14006 1.29746 1.51330 1.15968 0.85247 0.79290 0.79492 1.90909 1.14194 1.74715 1.65862 1.47543 1.09854 1.28820 1.47558 1.21492 0.83183 0.98312 1.02684 1.18907 0.94252 0.80572 0.89033 0.91626 1.22116 0.99433 1.00231 0.98821 1.21369 1.15338 0.90342 1.29155 0.92265 1.24881 0.94954 0.99041 0.94936 1.69887 1.23560 1.26008 1.33196 0.86441 0.79346 0.83258 0.78336 1.19860 1.20997 1.20916 1.21274 0.73654 0.77132 0.90030 1.93307 1.81786 1.42498 1.96752 1.93154 1.79931 1.69526 1.73961 1.93137 1.36842 1.95796 1.90932 1.20776 0.93516 0.97628 0.95333 1.21190 1.00291 0.91900 1.09077 0.92439 0.88134 0.92407 0.84571 0.84380 0.76274 0.93272 0.93807 0.90405 0.96926 0.88689 0.95158 0.92759 0.85322 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.77 10.50 -19.43 -0.20 -2.97 16 3 C 0.14 1.30 6.69 -39.21 -0.26 1.04 16 4 C -0.15 -1.38 9.99 -39.43 -0.39 -1.78 16 5 C -0.05 -0.46 9.66 -39.60 -0.38 -0.84 16 6 C -0.15 -1.61 4.63 -104.60 -0.48 -2.10 16 7 C 0.18 2.47 2.29 -69.08 -0.16 2.31 16 8 H 0.14 1.92 7.44 -51.93 -0.39 1.53 16 9 N -0.74 -11.43 4.81 -59.81 -0.29 -11.71 16 10 C 0.70 14.42 7.81 -86.92 -0.68 13.74 16 11 O -0.58 -14.19 14.24 5.28 0.08 -14.12 16 12 N -0.60 -12.75 2.75 -181.01 -0.50 -13.25 16 13 C 0.09 1.42 9.46 59.85 0.57 1.99 16 14 C 0.27 6.93 2.64 -69.08 -0.18 6.75 16 15 H 0.07 1.95 6.90 -51.93 -0.36 1.59 16 16 C -0.15 -3.48 8.94 37.16 0.33 -3.15 16 17 C -0.52 -14.16 8.37 -34.44 -0.29 -14.45 16 18 H 0.06 1.59 7.66 -52.49 -0.40 1.19 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 21 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.44 6.63 2.82 37.16 0.10 6.74 16 26 F -0.16 -3.10 15.67 2.25 0.04 -3.06 16 27 F -0.18 -2.60 17.03 2.25 0.04 -2.56 16 28 F -0.19 -2.72 16.21 2.25 0.04 -2.68 16 29 C -0.05 -0.54 8.30 -39.61 -0.33 -0.87 16 30 C -0.21 -1.81 9.04 -39.43 -0.36 -2.17 16 31 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.14 1.10 8.03 -52.49 -0.42 0.68 16 36 H 0.40 5.08 4.58 -40.82 -0.19 4.89 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.04 0.54 6.36 -51.93 -0.33 0.21 16 39 H 0.08 1.27 6.41 -51.93 -0.33 0.94 16 40 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 42 H 0.03 0.65 6.65 -51.93 -0.35 0.31 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.13 1.16 6.78 -52.49 -0.36 0.80 16 45 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -33.03 378.42 -6.50 -39.53 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.39 Total: 3.44 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -1.62 Total: 10.00 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.16 Total: -49.45 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.13 Total: -17.09 kcal Atomic # 9 Polarization: -8.42 SS G_CDS: 0.11 Total: -8.31 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.03 -6.50 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097100286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.603 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds