Wall clock time and date at job start Tue Mar 31 2020 06:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99998 * 2 1 4 4 C 1.38731 * 120.05625 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94580 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05565 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94652 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46910 * 20.00369 * 7 6 5 9 9 N 1.46510 * 109.47184 * 139.99803 * 7 6 5 10 10 C 1.34771 * 119.99790 * 205.00182 * 9 7 6 11 11 O 1.21584 * 120.00138 * 0.02562 * 10 9 7 12 12 N 1.34783 * 119.99706 * 179.97438 * 10 9 7 13 13 C 1.46499 * 119.99903 * 359.97438 * 12 10 9 14 14 C 1.46499 * 119.99826 * 179.97438 * 12 10 9 15 15 H 1.09002 * 109.47391 * 359.97438 * 14 12 10 16 16 C 1.53000 * 109.46840 * 120.00322 * 14 12 10 17 17 C 1.50699 * 109.47060 * 240.00064 * 14 12 10 18 18 H 1.07999 * 120.00019 * 0.02562 * 17 14 12 19 19 C 1.37877 * 120.00129 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99969 * 180.02562 * 19 17 14 21 21 Si 1.86797 * 119.99840 * 359.97438 * 19 17 14 22 22 H 1.48497 * 109.47167 * 89.99961 * 21 19 17 23 23 H 1.48500 * 109.47028 * 210.00109 * 21 19 17 24 24 H 1.48497 * 109.47377 * 330.00144 * 21 19 17 25 25 C 1.52995 * 109.47144 * 259.99865 * 7 6 5 26 26 F 1.39897 * 109.47509 * 299.99656 * 25 7 6 27 27 F 1.39892 * 109.47271 * 60.00310 * 25 7 6 28 28 F 1.39904 * 109.47141 * 179.97438 * 25 7 6 29 29 C 1.38270 * 120.10911 * 0.27269 * 6 5 4 30 30 C 1.38143 * 120.05519 * 359.45045 * 29 6 5 31 31 H 1.09000 * 109.47113 * 299.99624 * 1 2 3 32 32 H 1.09003 * 109.47281 * 59.99941 * 1 2 3 33 33 H 1.09007 * 109.47155 * 180.02562 * 1 2 3 34 34 H 1.08007 * 120.02891 * 359.95427 * 4 3 2 35 35 H 1.08000 * 119.97625 * 180.02562 * 5 4 3 36 36 H 0.96997 * 119.99670 * 25.00172 * 9 7 6 37 37 H 1.08994 * 109.47057 * 269.99924 * 13 12 10 38 38 H 1.09006 * 109.46711 * 30.00085 * 13 12 10 39 39 H 1.08998 * 109.46853 * 149.99878 * 13 12 10 40 40 H 1.08992 * 109.47399 * 59.99666 * 16 14 12 41 41 H 1.09004 * 109.46724 * 180.02562 * 16 14 12 42 42 H 1.09001 * 109.47194 * 299.99493 * 16 14 12 43 43 H 0.96999 * 119.99716 * 179.97438 * 20 19 17 44 44 H 1.08002 * 119.97070 * 179.70436 * 29 6 5 45 45 H 1.08000 * 120.02677 * 180.27227 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9860 5.0185 -0.0016 8 1 5.0116 4.9037 -0.3527 9 7 3.2653 5.9338 -0.8900 10 6 3.9099 6.9768 -1.4495 11 8 5.0895 7.1578 -1.2174 12 7 3.2469 7.8185 -2.2672 13 6 1.8259 7.5994 -2.5482 14 6 3.9474 8.9526 -2.8750 15 1 4.9883 8.9524 -2.5517 16 6 3.8861 8.8324 -4.3991 17 6 3.2889 10.2383 -2.4457 18 1 2.4344 10.2132 -1.7857 19 6 3.7773 11.4467 -2.8954 20 7 3.2030 12.5687 -2.5203 21 14 5.2558 11.4902 -4.0363 22 1 4.7945 11.4341 -5.4467 23 1 6.0161 12.7462 -3.8136 24 1 6.1322 10.3247 -3.7555 25 6 3.9938 5.5869 1.4188 26 9 2.6776 5.7343 1.8694 27 9 4.6820 4.7130 2.2671 28 9 4.6294 6.8332 1.4189 29 6 1.9210 3.6047 0.0041 30 6 1.2915 2.3751 -0.0011 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 4.0209 0.3799 -0.0002 35 1 5.1345 2.5750 -0.0019 36 1 2.3243 5.7891 -1.0754 37 1 1.7233 6.9587 -3.4239 38 1 1.3557 7.1195 -1.6898 39 1 1.3416 8.5569 -2.7396 40 1 2.8451 8.8329 -4.7220 41 1 4.4077 9.6760 -4.8513 42 1 4.3624 7.9024 -4.7096 43 1 3.5469 13.4189 -2.8364 44 1 1.3342 4.5113 0.0085 45 1 0.2129 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097100288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:06 Heat of formation + Delta-G solvation = -169.249625 kcal Electronic energy + Delta-G solvation = -33766.009369 eV Core-core repulsion = 28756.188738 eV Total energy + Delta-G solvation = -5009.820632 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.89454 -47.46035 -47.28616 -40.66592 -39.78380 -38.16270 -35.91034 -34.80747 -32.85006 -31.50804 -31.33616 -29.96806 -28.31002 -27.25067 -26.29491 -25.12336 -23.79652 -23.17291 -21.87637 -21.05928 -19.49725 -18.65216 -18.33173 -18.28510 -17.84967 -17.51948 -16.61476 -16.59827 -16.13783 -15.95137 -15.37921 -15.18153 -14.75820 -14.46726 -14.28180 -14.15367 -14.08160 -13.81302 -13.75331 -13.55260 -13.48020 -13.44949 -13.22926 -13.19454 -12.91069 -12.62286 -12.45744 -12.25542 -12.18197 -11.95197 -11.88096 -11.55206 -11.40536 -11.21563 -11.14715 -10.72665 -10.16634 -9.68993 -9.54876 -9.38867 -9.29619 -9.21058 -8.62765 -8.58823 -7.75964 -6.14009 -4.14612 0.87605 0.97278 2.66044 2.84498 2.91548 3.24178 3.38341 3.40509 3.41513 3.64076 3.85668 4.04540 4.22989 4.34540 4.36034 4.47389 4.48984 4.67153 4.70797 4.73761 4.92987 4.99937 5.05394 5.16456 5.19568 5.30785 5.51374 5.62369 5.77308 5.85801 5.92348 6.07911 6.17306 6.23981 6.30347 6.31354 6.38116 6.46303 6.77149 6.82807 6.95594 7.32726 7.47596 7.63068 8.32669 8.49323 8.86353 9.04365 9.46924 10.98710 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.015511 B = 0.002811 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.761254 B = 9957.766750 C =10699.515407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.139 3.861 4 C -0.150 4.150 5 C -0.047 4.047 6 C -0.147 4.147 7 C 0.179 3.821 8 H 0.136 0.864 9 N -0.742 5.742 10 C 0.702 3.298 11 O -0.581 6.581 12 N -0.597 5.597 13 C 0.083 3.917 14 C 0.245 3.755 15 H 0.065 0.935 16 C -0.160 4.160 17 C -0.528 4.528 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.895 5.895 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.262 1.262 25 C 0.436 3.564 26 F -0.184 7.184 27 F -0.184 7.184 28 F -0.162 7.162 29 C -0.054 4.054 30 C -0.206 4.206 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.401 0.599 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.033 0.967 43 H 0.266 0.734 44 H 0.129 0.871 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 -25.149 4.319 26.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.093 3.907 4 C -0.169 4.169 5 C -0.065 4.065 6 C -0.148 4.148 7 C 0.070 3.930 8 H 0.154 0.846 9 N -0.402 5.402 10 C 0.403 3.597 11 O -0.458 6.458 12 N -0.331 5.331 13 C -0.061 4.061 14 C 0.143 3.857 15 H 0.083 0.917 16 C -0.219 4.219 17 C -0.566 4.566 18 H 0.097 0.903 19 C -0.127 4.127 20 N -0.532 5.532 21 Si 0.713 3.287 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.187 1.187 25 C 0.379 3.621 26 F -0.166 7.166 27 F -0.165 7.165 28 F -0.143 7.143 29 C -0.072 4.072 30 C -0.224 4.224 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.239 0.761 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.147 0.853 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.000 -24.916 4.452 25.799 hybrid contribution -0.206 0.462 -0.405 0.648 sum -5.206 -24.454 4.046 25.327 Atomic orbital electron populations 1.23106 0.78077 1.04136 1.01640 1.86081 1.21666 1.26831 1.88369 1.19127 0.92448 0.84214 0.94903 1.20398 0.91364 0.98548 1.06591 1.20828 1.00253 0.90382 0.95069 1.19381 0.94030 0.92908 1.08441 1.20397 1.00942 0.86583 0.85118 0.84644 1.45255 1.14071 1.29622 1.51216 1.15892 0.85132 0.79340 0.79310 1.90904 1.14197 1.74880 1.65805 1.47108 1.09951 1.28222 1.47840 1.21598 0.82558 1.03166 0.98781 1.19232 0.94876 0.83253 0.88354 0.91728 1.22461 1.01179 0.99116 0.99105 1.21166 1.16625 0.88347 1.30504 0.90316 1.24851 0.96490 0.95360 0.96004 1.69873 1.40930 0.97655 1.44776 0.86915 0.83535 0.77438 0.80797 1.20438 1.22164 1.18699 1.21248 0.73727 0.77141 0.89984 1.93142 1.36737 1.95782 1.90944 1.93154 1.79939 1.69546 1.73883 1.93312 1.81726 1.42551 1.96751 1.20783 0.93495 0.97668 0.95261 1.21196 1.00332 0.91885 1.09019 0.92414 0.92381 0.88113 0.84564 0.84402 0.76090 0.93667 0.93367 0.89122 0.92617 0.93114 0.94815 0.92431 0.85292 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.69 10.50 -19.42 -0.20 -2.89 16 3 C 0.14 1.27 6.69 -39.22 -0.26 1.00 16 4 C -0.15 -1.34 9.99 -39.44 -0.39 -1.73 16 5 C -0.05 -0.43 9.66 -39.61 -0.38 -0.82 16 6 C -0.15 -1.56 4.64 -104.60 -0.49 -2.04 16 7 C 0.18 2.37 2.29 -69.08 -0.16 2.22 16 8 H 0.14 1.82 7.43 -51.93 -0.39 1.44 16 9 N -0.74 -10.93 4.81 -59.81 -0.29 -11.22 16 10 C 0.70 13.88 7.81 -86.92 -0.68 13.20 16 11 O -0.58 -13.56 14.24 5.29 0.08 -13.49 16 12 N -0.60 -12.08 2.75 -181.01 -0.50 -12.58 16 13 C 0.08 1.30 9.20 59.85 0.55 1.85 16 14 C 0.24 5.86 2.23 -69.08 -0.15 5.71 16 15 H 0.06 1.73 5.96 -51.93 -0.31 1.42 16 16 C -0.16 -3.40 8.67 37.16 0.32 -3.08 16 17 C -0.53 -14.50 8.57 -34.44 -0.30 -14.80 16 18 H 0.08 2.32 7.58 -52.49 -0.40 1.93 16 19 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 20 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 21 Si 0.88 21.80 24.37 -169.99 -4.14 17.65 16 22 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 25 C 0.44 6.48 2.82 37.15 0.10 6.59 16 26 F -0.18 -2.67 16.15 2.25 0.04 -2.64 16 27 F -0.18 -2.53 17.02 2.25 0.04 -2.49 16 28 F -0.16 -3.05 15.68 2.25 0.04 -3.01 16 29 C -0.05 -0.51 8.28 -39.60 -0.33 -0.84 16 30 C -0.21 -1.75 9.04 -39.43 -0.36 -2.11 16 31 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 32 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 33 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.14 1.03 8.03 -52.49 -0.42 0.61 16 36 H 0.40 4.87 4.61 -40.82 -0.19 4.68 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.61 6.36 -51.93 -0.33 0.28 16 39 H 0.09 1.57 7.02 -51.93 -0.36 1.21 16 40 H 0.05 1.09 7.67 -51.93 -0.40 0.69 16 41 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.13 1.12 6.78 -52.49 -0.36 0.77 16 45 H 0.13 0.83 6.30 -52.49 -0.33 0.50 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -34.26 372.26 -5.51 -39.77 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.32 Total: 3.11 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -1.62 Total: 8.32 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.01 Total: -49.93 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.13 Total: -16.38 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 0.11 Total: -8.14 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.14 Total: 17.65 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.26 -5.51 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097100288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.481 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds