Wall clock time and date at job start Tue Mar 31 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99998 * 2 1 4 4 C 1.38731 * 120.05625 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94580 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05565 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94652 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46910 * 20.00369 * 7 6 5 9 9 N 1.46510 * 109.47184 * 139.99803 * 7 6 5 10 10 C 1.34771 * 119.99790 * 205.00182 * 9 7 6 11 11 O 1.21584 * 120.00138 * 0.02562 * 10 9 7 12 12 N 1.34783 * 119.99706 * 179.97438 * 10 9 7 13 13 C 1.46499 * 119.99903 * 359.97438 * 12 10 9 14 14 C 1.46499 * 119.99826 * 179.97438 * 12 10 9 15 15 H 1.09002 * 109.47391 * 359.97438 * 14 12 10 16 16 C 1.53000 * 109.46840 * 120.00322 * 14 12 10 17 17 C 1.50699 * 109.47060 * 240.00064 * 14 12 10 18 18 H 1.07999 * 120.00019 * 0.02562 * 17 14 12 19 19 C 1.37877 * 120.00129 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99969 * 180.02562 * 19 17 14 21 21 Si 1.86797 * 119.99840 * 359.97438 * 19 17 14 22 22 H 1.48497 * 109.47167 * 89.99961 * 21 19 17 23 23 H 1.48500 * 109.47028 * 210.00109 * 21 19 17 24 24 H 1.48497 * 109.47377 * 330.00144 * 21 19 17 25 25 C 1.52995 * 109.47144 * 259.99865 * 7 6 5 26 26 F 1.39897 * 109.47509 * 299.99656 * 25 7 6 27 27 F 1.39892 * 109.47271 * 60.00310 * 25 7 6 28 28 F 1.39904 * 109.47141 * 179.97438 * 25 7 6 29 29 C 1.38270 * 120.10911 * 0.27269 * 6 5 4 30 30 C 1.38143 * 120.05519 * 359.45045 * 29 6 5 31 31 H 1.09000 * 109.47113 * 299.99624 * 1 2 3 32 32 H 1.09003 * 109.47281 * 59.99941 * 1 2 3 33 33 H 1.09007 * 109.47155 * 180.02562 * 1 2 3 34 34 H 1.08007 * 120.02891 * 359.95427 * 4 3 2 35 35 H 1.08000 * 119.97625 * 180.02562 * 5 4 3 36 36 H 0.96997 * 119.99670 * 25.00172 * 9 7 6 37 37 H 1.08994 * 109.47057 * 269.99924 * 13 12 10 38 38 H 1.09006 * 109.46711 * 30.00085 * 13 12 10 39 39 H 1.08998 * 109.46853 * 149.99878 * 13 12 10 40 40 H 1.08992 * 109.47399 * 59.99666 * 16 14 12 41 41 H 1.09004 * 109.46724 * 180.02562 * 16 14 12 42 42 H 1.09001 * 109.47194 * 299.99493 * 16 14 12 43 43 H 0.96999 * 119.99716 * 179.97438 * 20 19 17 44 44 H 1.08002 * 119.97070 * 179.70436 * 29 6 5 45 45 H 1.08000 * 120.02677 * 180.27227 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9860 5.0185 -0.0016 8 1 5.0116 4.9037 -0.3527 9 7 3.2653 5.9338 -0.8900 10 6 3.9099 6.9768 -1.4495 11 8 5.0895 7.1578 -1.2174 12 7 3.2469 7.8185 -2.2672 13 6 1.8259 7.5994 -2.5482 14 6 3.9474 8.9526 -2.8750 15 1 4.9883 8.9524 -2.5517 16 6 3.8861 8.8324 -4.3991 17 6 3.2889 10.2383 -2.4457 18 1 2.4344 10.2132 -1.7857 19 6 3.7773 11.4467 -2.8954 20 7 3.2030 12.5687 -2.5203 21 14 5.2558 11.4902 -4.0363 22 1 4.7945 11.4341 -5.4467 23 1 6.0161 12.7462 -3.8136 24 1 6.1322 10.3247 -3.7555 25 6 3.9938 5.5869 1.4188 26 9 2.6776 5.7343 1.8694 27 9 4.6820 4.7130 2.2671 28 9 4.6294 6.8332 1.4189 29 6 1.9210 3.6047 0.0041 30 6 1.2915 2.3751 -0.0011 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 4.0209 0.3799 -0.0002 35 1 5.1345 2.5750 -0.0019 36 1 2.3243 5.7891 -1.0754 37 1 1.7233 6.9587 -3.4239 38 1 1.3557 7.1195 -1.6898 39 1 1.3416 8.5569 -2.7396 40 1 2.8451 8.8329 -4.7220 41 1 4.4077 9.6760 -4.8513 42 1 4.3624 7.9024 -4.7096 43 1 3.5469 13.4189 -2.8364 44 1 1.3342 4.5113 0.0085 45 1 0.2129 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097100288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:05 Heat of formation + Delta-G solvation = -192.102703 kcal Electronic energy + Delta-G solvation = -33767.000353 eV Core-core repulsion = 28756.188738 eV Total energy + Delta-G solvation = -5010.811616 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -51.11533 -48.62651 -48.59865 -41.57510 -40.97692 -38.97104 -37.44888 -36.12411 -34.75712 -32.81427 -32.16315 -31.30066 -29.16314 -27.89868 -27.69674 -27.13567 -24.87583 -24.04268 -23.07782 -22.18035 -20.94466 -19.74754 -19.54955 -19.23810 -19.08930 -18.93566 -18.43714 -17.62923 -17.12165 -16.83300 -16.64249 -16.33990 -16.02684 -15.73608 -15.51261 -15.40122 -15.16671 -15.02665 -14.80808 -14.77530 -14.72323 -14.66416 -14.40566 -14.33821 -14.15847 -14.01968 -13.81871 -13.61896 -13.26888 -13.10925 -12.98783 -12.90733 -12.69573 -12.59941 -12.04604 -11.99671 -11.81566 -11.57760 -11.36280 -11.16384 -10.77367 -10.56934 -10.04657 -9.36891 -9.27798 -8.33070 -6.37274 0.13787 0.31128 1.28077 1.37408 1.39085 1.47045 1.73767 2.17076 2.29926 2.33356 2.58061 2.80396 2.87217 2.97398 3.03031 3.26438 3.58967 3.70775 3.85929 4.06950 4.22237 4.29257 4.37591 4.43229 4.45932 4.50660 4.57988 4.60435 4.63295 4.76653 4.77646 4.93604 4.96110 5.02840 5.09144 5.14535 5.24325 5.27530 5.43484 5.52708 5.65122 5.67931 5.89772 6.31536 6.38192 6.64721 6.95537 7.26004 7.52757 8.83036 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.015511 B = 0.002811 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.761254 B = 9957.766750 C =10699.515407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.135 3.865 4 C -0.157 4.157 5 C -0.048 4.048 6 C -0.160 4.160 7 C 0.186 3.814 8 H 0.132 0.868 9 N -0.723 5.723 10 C 0.698 3.302 11 O -0.622 6.622 12 N -0.607 5.607 13 C 0.079 3.921 14 C 0.249 3.751 15 H 0.033 0.967 16 C -0.152 4.152 17 C -0.525 4.525 18 H 0.045 0.955 19 C 0.022 3.978 20 N -0.941 5.941 21 Si 0.941 3.059 22 H -0.252 1.252 23 H -0.298 1.298 24 H -0.260 1.260 25 C 0.432 3.568 26 F -0.182 7.182 27 F -0.177 7.177 28 F -0.190 7.190 29 C -0.059 4.059 30 C -0.204 4.204 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.415 0.585 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.057 0.943 43 H 0.268 0.732 44 H 0.136 0.864 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.828 -27.913 3.194 28.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.089 3.911 4 C -0.176 4.176 5 C -0.067 4.067 6 C -0.161 4.161 7 C 0.077 3.923 8 H 0.150 0.850 9 N -0.383 5.383 10 C 0.400 3.600 11 O -0.502 6.502 12 N -0.341 5.341 13 C -0.063 4.063 14 C 0.145 3.855 15 H 0.051 0.949 16 C -0.210 4.210 17 C -0.564 4.564 18 H 0.063 0.937 19 C -0.177 4.177 20 N -0.580 5.580 21 Si 0.768 3.232 22 H -0.177 1.177 23 H -0.226 1.226 24 H -0.185 1.185 25 C 0.375 3.625 26 F -0.163 7.163 27 F -0.158 7.158 28 F -0.172 7.172 29 C -0.077 4.077 30 C -0.223 4.223 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.256 0.744 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.154 0.846 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.956 -27.741 3.328 28.568 hybrid contribution -0.054 1.186 0.090 1.191 sum -6.010 -26.554 3.418 27.440 Atomic orbital electron populations 1.23392 0.76267 1.05727 1.02484 1.86073 1.23603 1.26565 1.88109 1.19334 0.92764 0.84753 0.94275 1.20610 0.91761 0.98852 1.06329 1.20990 1.01009 0.90116 0.94553 1.19224 0.94566 0.91550 1.10753 1.20437 1.01115 0.87322 0.83440 0.85047 1.45001 1.14601 1.28344 1.50350 1.16040 0.84768 0.80075 0.79141 1.90871 1.16205 1.76082 1.67076 1.47055 1.11627 1.27427 1.48006 1.21825 0.79853 1.03036 1.01619 1.18877 0.93095 0.83014 0.90529 0.94875 1.22301 1.02427 0.99932 0.96323 1.21388 1.15388 0.90313 1.29288 0.93709 1.25639 0.99250 0.94987 0.97774 1.70005 1.42908 0.98368 1.46740 0.85980 0.80059 0.77041 0.80098 1.17729 1.22600 1.18488 1.21546 0.73585 0.76207 0.91122 1.93139 1.36436 1.95734 1.91037 1.93160 1.79824 1.69046 1.73786 1.93258 1.82357 1.44598 1.96940 1.20908 0.93092 0.98514 0.95207 1.21408 1.01518 0.91155 1.08201 0.91603 0.91423 0.86336 0.83199 0.83146 0.74411 0.90275 0.90424 0.91227 0.91049 0.93989 0.92421 0.92317 0.84596 0.82653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -4.79 10.50 -92.40 -0.97 -5.76 16 3 C 0.13 2.13 6.69 22.51 0.15 2.28 16 4 C -0.16 -2.46 9.99 22.36 0.22 -2.23 16 5 C -0.05 -0.81 9.66 22.25 0.22 -0.60 16 6 C -0.16 -3.12 4.64 -19.85 -0.09 -3.22 16 7 C 0.19 4.76 2.29 44.24 0.10 4.86 16 8 H 0.13 3.50 7.43 -2.39 -0.02 3.49 16 9 N -0.72 -20.43 4.81 -461.41 -2.22 -22.65 16 10 C 0.70 27.35 7.81 179.05 1.40 28.75 16 11 O -0.62 -29.49 14.24 -3.98 -0.06 -29.55 16 12 N -0.61 -24.16 2.75 -844.85 -2.33 -26.48 16 13 C 0.08 2.32 9.20 127.77 1.18 3.50 16 14 C 0.25 11.86 2.23 44.25 0.10 11.96 16 15 H 0.03 1.80 5.96 -2.39 -0.01 1.79 16 16 C -0.15 -6.13 8.67 71.98 0.62 -5.50 16 17 C -0.53 -29.47 8.57 25.60 0.22 -29.26 16 18 H 0.04 2.75 7.58 -2.91 -0.02 2.73 16 19 C 0.02 1.27 5.45 84.65 0.46 1.74 16 20 N -0.94 -57.99 13.96 21.45 0.30 -57.69 16 21 Si 0.94 45.10 24.37 68.60 1.67 46.77 16 22 H -0.25 -10.98 6.87 99.48 0.68 -10.30 16 23 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 24 H -0.26 -12.30 6.53 99.48 0.65 -11.65 16 25 C 0.43 12.72 2.82 71.98 0.20 12.92 16 26 F -0.18 -5.12 16.15 44.97 0.73 -4.39 16 27 F -0.18 -4.78 17.02 44.97 0.77 -4.01 16 28 F -0.19 -7.30 15.68 44.97 0.70 -6.60 16 29 C -0.06 -0.99 8.28 22.25 0.18 -0.80 16 30 C -0.20 -2.91 9.04 22.37 0.20 -2.70 16 31 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 32 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 33 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.15 2.02 8.03 -2.91 -0.02 2.00 16 36 H 0.42 9.15 4.61 -92.71 -0.43 8.72 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 1.78 6.36 -2.38 -0.02 1.76 16 39 H 0.07 2.37 7.02 -2.39 -0.02 2.35 16 40 H 0.07 2.62 7.67 -2.39 -0.02 2.60 16 41 H 0.04 1.76 3.27 -2.39 -0.01 1.75 16 42 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 44 H 0.14 2.01 6.78 -2.91 -0.02 1.99 16 45 H 0.16 1.41 6.30 -2.91 -0.02 1.40 16 Total: -1.00 -76.51 372.26 5.42 -71.08 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.55 Total: 16.36 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 6.28 Total: 22.93 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -4.24 Total: -106.82 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.03 Total: -35.31 kcal Atomic # 9 Polarization: -17.20 SS G_CDS: 2.20 Total: -15.00 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.67 Total: 46.77 kcal Total: -76.51 5.42 -71.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097100288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.022 kcal (2) G-P(sol) polarization free energy of solvation -76.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds