Wall clock time and date at job start Tue Mar 31 2020 06:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35900 * 117.00408 * 2 1 4 4 C 1.38733 * 120.06200 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94389 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.05907 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.94250 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47300 * 20.00111 * 7 6 5 9 9 N 1.46505 * 109.46698 * 140.00445 * 7 6 5 10 10 C 1.34774 * 119.99466 * 205.00183 * 9 7 6 11 11 O 1.21587 * 120.00494 * 359.97438 * 10 9 7 12 12 N 1.34773 * 119.99486 * 180.02562 * 10 9 7 13 13 C 1.46504 * 120.00513 * 359.97438 * 12 10 9 14 14 C 1.46504 * 119.99967 * 179.97438 * 12 10 9 15 15 H 1.09004 * 109.46912 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.47160 * 239.99712 * 14 12 10 17 17 C 1.50696 * 109.47320 * 119.99587 * 14 12 10 18 18 H 1.08006 * 120.00263 * 5.62560 * 17 14 12 19 19 C 1.37875 * 120.00299 * 185.61989 * 17 14 12 20 20 N 1.31511 * 120.00157 * 196.97108 * 19 17 14 21 21 Si 1.86798 * 119.99893 * 17.24348 * 19 17 14 22 22 H 1.48496 * 109.47439 * 179.72791 * 21 19 17 23 23 H 1.48507 * 109.47069 * 299.72536 * 21 19 17 24 24 H 1.48497 * 109.47361 * 59.72470 * 21 19 17 25 25 C 1.53002 * 109.46907 * 260.00211 * 7 6 5 26 26 F 1.39899 * 109.47276 * 299.99823 * 25 7 6 27 27 F 1.39898 * 109.47446 * 60.00502 * 25 7 6 28 28 F 1.39903 * 109.46726 * 180.02562 * 25 7 6 29 29 C 1.38258 * 120.10892 * 0.27607 * 6 5 4 30 30 C 1.38148 * 120.05879 * 359.44826 * 29 6 5 31 31 H 1.09005 * 109.47245 * 300.00566 * 1 2 3 32 32 H 1.09001 * 109.47106 * 60.00083 * 1 2 3 33 33 H 1.09000 * 109.47465 * 180.02562 * 1 2 3 34 34 H 1.07997 * 120.02556 * 359.95241 * 4 3 2 35 35 H 1.08005 * 119.96686 * 180.02562 * 5 4 3 36 36 H 0.96997 * 119.99827 * 25.00133 * 9 7 6 37 37 H 1.08999 * 109.47383 * 270.00539 * 13 12 10 38 38 H 1.09000 * 109.46583 * 30.00556 * 13 12 10 39 39 H 1.08995 * 109.47202 * 150.00141 * 13 12 10 40 40 H 1.08997 * 109.47120 * 65.88201 * 16 14 12 41 41 H 1.08996 * 109.47559 * 185.88044 * 16 14 12 42 42 H 1.08995 * 109.47228 * 305.88227 * 16 14 12 43 43 H 0.96996 * 120.00531 * 355.07916 * 20 19 17 44 44 H 1.08002 * 119.97224 * 179.70656 * 29 6 5 45 45 H 1.07998 * 120.03005 * 180.27635 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0185 -0.0016 8 1 5.0116 4.9038 -0.3527 9 7 3.2653 5.9338 -0.8899 10 6 3.9099 6.9768 -1.4495 11 8 5.0894 7.1584 -1.2168 12 7 3.2466 7.8191 -2.2662 13 6 1.8253 7.6007 -2.5462 14 6 3.9471 8.9532 -2.8741 15 1 4.9883 8.9524 -2.5516 16 6 3.2793 10.2586 -2.4372 17 6 3.8857 8.8355 -4.3752 18 1 3.3001 8.0513 -4.8319 19 6 4.5769 9.7290 -5.1657 20 7 4.2750 9.8499 -6.4399 21 14 5.9474 10.7622 -4.4284 22 1 6.5325 11.6318 -5.4804 23 1 5.3984 11.6066 -3.3371 24 1 7.0008 9.8698 -3.8815 25 6 3.9939 5.5869 1.4189 26 9 2.6777 5.7343 1.8695 27 9 4.6822 4.7129 2.2672 28 9 4.6286 6.8337 1.4188 29 6 1.9212 3.6048 0.0042 30 6 1.2915 2.3751 -0.0011 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 4.0209 0.3800 -0.0002 35 1 5.1345 2.5750 -0.0019 36 1 2.3243 5.7892 -1.0752 37 1 1.7217 6.9604 -3.4222 38 1 1.3555 7.1208 -1.6877 39 1 1.3412 8.5585 -2.7369 40 1 3.4152 10.3949 -1.3643 41 1 3.7326 11.0947 -2.9698 42 1 2.2145 10.2165 -2.6661 43 1 3.6161 9.2614 -6.8403 44 1 1.3342 4.5114 0.0085 45 1 0.2129 2.3202 -0.0011 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097100292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:11 Heat of formation + Delta-G solvation = -176.526044 kcal Electronic energy + Delta-G solvation = -33771.210694 eV Core-core repulsion = 28761.074533 eV Total energy + Delta-G solvation = -5010.136161 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.98220 -47.53921 -47.38930 -40.66136 -39.78411 -38.15725 -35.88742 -34.81491 -32.89937 -31.50284 -31.30963 -29.81446 -28.29877 -27.26288 -26.35660 -24.74447 -23.81307 -23.14472 -21.77860 -20.98021 -19.44467 -18.65865 -18.38261 -18.34528 -17.88169 -17.58014 -17.30476 -16.60816 -16.12974 -15.93517 -15.35101 -14.96941 -14.90169 -14.47393 -14.26186 -14.14337 -13.94852 -13.89557 -13.72682 -13.60117 -13.55541 -13.41286 -13.29753 -13.18077 -12.91574 -12.70879 -12.45237 -12.26387 -12.12065 -11.94146 -11.66513 -11.46703 -11.41118 -11.31100 -11.19736 -10.45918 -9.99331 -9.74085 -9.59306 -9.38179 -9.23138 -9.07023 -8.58396 -8.32604 -7.78938 -6.48917 -4.13381 0.88159 0.97948 2.63293 2.85356 2.88259 3.38809 3.39967 3.50516 3.61272 3.63773 3.82370 4.01168 4.19895 4.34124 4.44727 4.46622 4.49245 4.63787 4.68377 4.74342 4.93033 5.00108 5.05922 5.16999 5.22640 5.31174 5.44165 5.62484 5.77750 5.86226 5.92495 6.06973 6.10446 6.30892 6.32065 6.38840 6.42967 6.58929 6.77654 6.96397 6.96854 7.36297 7.53804 7.88868 8.31831 8.43515 8.81274 9.05809 9.55135 10.88877 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.002937 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.363968 B = 9532.173452 C =10551.071289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.139 3.861 4 C -0.150 4.150 5 C -0.046 4.046 6 C -0.147 4.147 7 C 0.179 3.821 8 H 0.137 0.863 9 N -0.742 5.742 10 C 0.700 3.300 11 O -0.581 6.581 12 N -0.598 5.598 13 C 0.090 3.910 14 C 0.249 3.751 15 H 0.057 0.943 16 C -0.162 4.162 17 C -0.610 4.610 18 H 0.060 0.940 19 C 0.036 3.964 20 N -0.902 5.902 21 Si 1.040 2.960 22 H -0.284 1.284 23 H -0.273 1.273 24 H -0.278 1.278 25 C 0.437 3.563 26 F -0.185 7.185 27 F -0.182 7.182 28 F -0.165 7.165 29 C -0.054 4.054 30 C -0.206 4.206 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.400 0.600 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.027 0.973 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.267 0.733 44 H 0.128 0.872 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 -17.483 15.719 25.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.093 3.907 4 C -0.168 4.168 5 C -0.065 4.065 6 C -0.148 4.148 7 C 0.069 3.931 8 H 0.154 0.846 9 N -0.402 5.402 10 C 0.402 3.598 11 O -0.459 6.459 12 N -0.332 5.332 13 C -0.054 4.054 14 C 0.147 3.853 15 H 0.075 0.925 16 C -0.221 4.221 17 C -0.648 4.648 18 H 0.078 0.922 19 C -0.170 4.170 20 N -0.536 5.536 21 Si 0.868 3.132 22 H -0.210 1.210 23 H -0.199 1.199 24 H -0.204 1.204 25 C 0.380 3.620 26 F -0.167 7.167 27 F -0.164 7.164 28 F -0.147 7.147 29 C -0.072 4.072 30 C -0.225 4.225 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.238 0.762 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.146 0.854 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.934 -16.243 15.491 23.492 hybrid contribution -2.073 -1.118 0.426 2.393 sum -9.007 -17.361 15.917 25.216 Atomic orbital electron populations 1.23103 0.78096 1.04143 1.01610 1.86082 1.21653 1.26817 1.88356 1.19130 0.92453 0.84211 0.94860 1.20406 0.91365 0.98573 1.06492 1.20840 1.00301 0.90383 0.94942 1.19366 0.94020 0.92910 1.08493 1.20402 1.01112 0.86627 0.84941 0.84557 1.45268 1.14041 1.29599 1.51286 1.15925 0.85115 0.79521 0.79275 1.90900 1.13930 1.74867 1.66156 1.47219 1.09987 1.28833 1.47166 1.21493 0.82352 1.02605 0.98979 1.19148 0.92687 0.79955 0.93468 0.92488 1.22538 1.01169 1.00055 0.98299 1.22179 1.34468 1.18490 0.89657 0.92196 1.25674 0.98860 0.97184 0.95246 1.70878 1.33542 1.35751 1.13401 0.84119 0.76735 0.76770 0.75595 1.21014 1.19920 1.20364 1.21271 0.73606 0.77009 0.90105 1.93136 1.36813 1.95783 1.90973 1.93160 1.79910 1.69482 1.73828 1.93282 1.81860 1.42723 1.96788 1.20752 0.93471 0.97608 0.95411 1.21189 1.00305 0.91897 1.09073 0.92458 0.92374 0.88098 0.84514 0.84351 0.76155 0.93096 0.93632 0.90379 0.95388 0.91464 0.93432 0.92283 0.85417 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.81 10.50 -19.43 -0.20 -3.01 16 3 C 0.14 1.33 6.69 -39.21 -0.26 1.07 16 4 C -0.15 -1.40 9.99 -39.43 -0.39 -1.80 16 5 C -0.05 -0.45 9.66 -39.61 -0.38 -0.84 16 6 C -0.15 -1.62 4.64 -104.60 -0.49 -2.10 16 7 C 0.18 2.40 2.29 -69.08 -0.16 2.24 16 8 H 0.14 1.91 7.43 -51.93 -0.39 1.53 16 9 N -0.74 -11.13 4.81 -59.81 -0.29 -11.42 16 10 C 0.70 14.06 7.81 -86.92 -0.68 13.39 16 11 O -0.58 -13.70 14.24 5.29 0.08 -13.63 16 12 N -0.60 -12.36 2.75 -181.01 -0.50 -12.86 16 13 C 0.09 1.45 9.39 59.85 0.56 2.01 16 14 C 0.25 6.03 2.22 -69.08 -0.15 5.88 16 15 H 0.06 1.52 5.56 -51.93 -0.29 1.23 16 16 C -0.16 -3.52 8.96 37.16 0.33 -3.19 16 17 C -0.61 -16.70 8.68 -34.44 -0.30 -17.00 16 18 H 0.06 1.75 7.75 -52.48 -0.41 1.34 16 19 C 0.04 1.03 5.30 -17.82 -0.09 0.93 16 20 N -0.90 -27.11 13.70 55.43 0.76 -26.35 16 21 Si 1.04 25.36 26.29 -169.99 -4.47 20.90 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.11 5.74 56.52 0.32 -5.78 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.44 6.19 2.82 37.16 0.10 6.29 16 26 F -0.19 -2.50 16.15 2.25 0.04 -2.46 16 27 F -0.18 -2.42 17.02 2.25 0.04 -2.38 16 28 F -0.17 -2.87 15.67 2.25 0.04 -2.83 16 29 C -0.05 -0.53 8.28 -39.61 -0.33 -0.86 16 30 C -0.21 -1.82 9.04 -39.43 -0.36 -2.18 16 31 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 32 H 0.06 0.26 7.66 -51.93 -0.40 -0.13 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.14 1.12 8.03 -52.48 -0.42 0.70 16 36 H 0.40 4.98 4.61 -40.82 -0.19 4.80 16 37 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.05 0.56 6.36 -51.93 -0.33 0.23 16 39 H 0.08 1.27 6.33 -51.93 -0.33 0.94 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.51 4.85 -51.93 -0.25 1.26 16 42 H 0.05 0.95 6.44 -51.93 -0.33 0.62 16 43 H 0.27 7.97 8.73 -40.82 -0.36 7.61 16 44 H 0.13 1.11 6.78 -52.49 -0.36 0.76 16 45 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -33.93 373.57 -5.82 -39.75 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.34 Total: 3.69 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -1.60 Total: 4.97 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.03 Total: -50.63 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.13 Total: -16.64 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 0.11 Total: -7.67 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -4.47 Total: 20.90 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.93 -5.82 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097100292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.775 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds