Wall clock time and date at job start Tue Mar 31 2020 06:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35900 * 117.00408 * 2 1 4 4 C 1.38733 * 120.06200 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94389 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.05907 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.94250 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47300 * 20.00111 * 7 6 5 9 9 N 1.46505 * 109.46698 * 140.00445 * 7 6 5 10 10 C 1.34774 * 119.99466 * 205.00183 * 9 7 6 11 11 O 1.21587 * 120.00494 * 359.97438 * 10 9 7 12 12 N 1.34773 * 119.99486 * 180.02562 * 10 9 7 13 13 C 1.46504 * 120.00513 * 359.97438 * 12 10 9 14 14 C 1.46504 * 119.99967 * 179.97438 * 12 10 9 15 15 H 1.09004 * 109.46912 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.47160 * 239.99712 * 14 12 10 17 17 C 1.50696 * 109.47320 * 119.99587 * 14 12 10 18 18 H 1.08006 * 120.00263 * 5.62560 * 17 14 12 19 19 C 1.37875 * 120.00299 * 185.61989 * 17 14 12 20 20 N 1.31511 * 120.00157 * 196.97108 * 19 17 14 21 21 Si 1.86798 * 119.99893 * 17.24348 * 19 17 14 22 22 H 1.48496 * 109.47439 * 179.72791 * 21 19 17 23 23 H 1.48507 * 109.47069 * 299.72536 * 21 19 17 24 24 H 1.48497 * 109.47361 * 59.72470 * 21 19 17 25 25 C 1.53002 * 109.46907 * 260.00211 * 7 6 5 26 26 F 1.39899 * 109.47276 * 299.99823 * 25 7 6 27 27 F 1.39898 * 109.47446 * 60.00502 * 25 7 6 28 28 F 1.39903 * 109.46726 * 180.02562 * 25 7 6 29 29 C 1.38258 * 120.10892 * 0.27607 * 6 5 4 30 30 C 1.38148 * 120.05879 * 359.44826 * 29 6 5 31 31 H 1.09005 * 109.47245 * 300.00566 * 1 2 3 32 32 H 1.09001 * 109.47106 * 60.00083 * 1 2 3 33 33 H 1.09000 * 109.47465 * 180.02562 * 1 2 3 34 34 H 1.07997 * 120.02556 * 359.95241 * 4 3 2 35 35 H 1.08005 * 119.96686 * 180.02562 * 5 4 3 36 36 H 0.96997 * 119.99827 * 25.00133 * 9 7 6 37 37 H 1.08999 * 109.47383 * 270.00539 * 13 12 10 38 38 H 1.09000 * 109.46583 * 30.00556 * 13 12 10 39 39 H 1.08995 * 109.47202 * 150.00141 * 13 12 10 40 40 H 1.08997 * 109.47120 * 65.88201 * 16 14 12 41 41 H 1.08996 * 109.47559 * 185.88044 * 16 14 12 42 42 H 1.08995 * 109.47228 * 305.88227 * 16 14 12 43 43 H 0.96996 * 120.00531 * 355.07916 * 20 19 17 44 44 H 1.08002 * 119.97224 * 179.70656 * 29 6 5 45 45 H 1.07998 * 120.03005 * 180.27635 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9861 5.0185 -0.0016 8 1 5.0116 4.9038 -0.3527 9 7 3.2653 5.9338 -0.8899 10 6 3.9099 6.9768 -1.4495 11 8 5.0894 7.1584 -1.2168 12 7 3.2466 7.8191 -2.2662 13 6 1.8253 7.6007 -2.5462 14 6 3.9471 8.9532 -2.8741 15 1 4.9883 8.9524 -2.5516 16 6 3.2793 10.2586 -2.4372 17 6 3.8857 8.8355 -4.3752 18 1 3.3001 8.0513 -4.8319 19 6 4.5769 9.7290 -5.1657 20 7 4.2750 9.8499 -6.4399 21 14 5.9474 10.7622 -4.4284 22 1 6.5325 11.6318 -5.4804 23 1 5.3984 11.6066 -3.3371 24 1 7.0008 9.8698 -3.8815 25 6 3.9939 5.5869 1.4189 26 9 2.6777 5.7343 1.8695 27 9 4.6822 4.7129 2.2672 28 9 4.6286 6.8337 1.4188 29 6 1.9212 3.6048 0.0042 30 6 1.2915 2.3751 -0.0011 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 4.0209 0.3800 -0.0002 35 1 5.1345 2.5750 -0.0019 36 1 2.3243 5.7892 -1.0752 37 1 1.7217 6.9604 -3.4222 38 1 1.3555 7.1208 -1.6877 39 1 1.3412 8.5585 -2.7369 40 1 3.4152 10.3949 -1.3643 41 1 3.7326 11.0947 -2.9698 42 1 2.2145 10.2165 -2.6661 43 1 3.6161 9.2614 -6.8403 44 1 1.3342 4.5114 0.0085 45 1 0.2129 2.3202 -0.0011 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097100292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:10 Heat of formation + Delta-G solvation = -198.443249 kcal Electronic energy + Delta-G solvation = -33772.161095 eV Core-core repulsion = 28761.074533 eV Total energy + Delta-G solvation = -5011.086562 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -51.12418 -48.63337 -48.60017 -41.60035 -41.00199 -38.99471 -37.45065 -36.15236 -34.84367 -32.73292 -32.19237 -31.21399 -29.17573 -27.92431 -27.79944 -26.75090 -24.85981 -24.01973 -22.96726 -22.18352 -20.94932 -19.75403 -19.55503 -19.53632 -19.21119 -19.06274 -18.72572 -17.58838 -16.99972 -16.67228 -16.59672 -16.50139 -15.86692 -15.62402 -15.50841 -15.41222 -15.08688 -15.03415 -14.81131 -14.78086 -14.77387 -14.67930 -14.53775 -14.36995 -14.25879 -14.00818 -13.76185 -13.46373 -13.25385 -13.19220 -13.07036 -12.91323 -12.67869 -12.36912 -12.03215 -11.84993 -11.82919 -11.62802 -11.29731 -11.10730 -10.59789 -10.45392 -10.07698 -9.50623 -9.30530 -8.69574 -6.37706 0.11064 0.28017 1.37633 1.45179 1.54433 1.67541 1.72956 2.14964 2.30735 2.43780 2.55118 2.78389 2.84583 2.94472 3.06004 3.25410 3.57297 3.67908 3.83253 4.04445 4.18645 4.22309 4.34763 4.40880 4.43432 4.47523 4.57524 4.60544 4.73152 4.74319 4.75099 4.89127 4.93066 4.98862 5.10817 5.14361 5.24184 5.29168 5.40119 5.62128 5.63660 5.79804 5.97805 6.07220 6.35598 6.59458 6.92648 7.34133 7.51154 8.63962 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.002937 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.363968 B = 9532.173452 C =10551.071289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.134 3.866 4 C -0.158 4.158 5 C -0.051 4.051 6 C -0.162 4.162 7 C 0.183 3.817 8 H 0.127 0.873 9 N -0.724 5.724 10 C 0.697 3.303 11 O -0.621 6.621 12 N -0.609 5.609 13 C 0.086 3.914 14 C 0.250 3.750 15 H 0.033 0.967 16 C -0.154 4.154 17 C -0.603 4.603 18 H 0.032 0.968 19 C -0.009 4.009 20 N -0.932 5.932 21 Si 1.072 2.928 22 H -0.284 1.284 23 H -0.239 1.239 24 H -0.281 1.281 25 C 0.438 3.562 26 F -0.179 7.179 27 F -0.177 7.177 28 F -0.186 7.186 29 C -0.059 4.059 30 C -0.205 4.205 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.414 0.586 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.255 0.745 44 H 0.139 0.861 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.552 -18.369 17.476 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.088 3.912 4 C -0.177 4.177 5 C -0.069 4.069 6 C -0.163 4.163 7 C 0.074 3.926 8 H 0.144 0.856 9 N -0.384 5.384 10 C 0.399 3.601 11 O -0.501 6.501 12 N -0.343 5.343 13 C -0.057 4.057 14 C 0.146 3.854 15 H 0.051 0.949 16 C -0.212 4.212 17 C -0.641 4.641 18 H 0.050 0.950 19 C -0.208 4.208 20 N -0.568 5.568 21 Si 0.894 3.106 22 H -0.210 1.210 23 H -0.163 1.163 24 H -0.207 1.207 25 C 0.381 3.619 26 F -0.160 7.160 27 F -0.158 7.158 28 F -0.168 7.168 29 C -0.077 4.077 30 C -0.223 4.223 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.255 0.745 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.157 0.843 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.608 -17.174 17.279 25.838 hybrid contribution -1.673 -1.056 -0.089 1.980 sum -10.280 -18.230 17.189 27.083 Atomic orbital electron populations 1.23395 0.76231 1.05757 1.02492 1.86073 1.23647 1.26553 1.88104 1.19337 0.92731 0.84830 0.94284 1.20611 0.91849 0.98834 1.06369 1.21000 1.00990 0.90270 0.94654 1.19252 0.94666 0.91668 1.10696 1.20425 1.00877 0.87345 0.83946 0.85574 1.45009 1.14564 1.28254 1.50557 1.16067 0.84708 0.80155 0.79218 1.90869 1.15821 1.75980 1.67456 1.47156 1.11550 1.28349 1.47239 1.21707 0.80081 1.03069 1.00815 1.18864 0.92488 0.82625 0.91381 0.94883 1.22377 1.01651 0.97922 0.99277 1.22332 1.32983 1.17009 0.91796 0.94978 1.26809 1.00336 0.98655 0.95041 1.70986 1.34467 1.36764 1.14559 0.83717 0.74574 0.76218 0.76066 1.20951 1.16294 1.20679 1.21330 0.73681 0.76236 0.90618 1.93142 1.36231 1.95717 1.90953 1.93168 1.79852 1.69126 1.73661 1.93243 1.82372 1.44243 1.96915 1.20916 0.93007 0.98584 0.95187 1.21428 1.01557 0.91160 1.08168 0.91392 0.91581 0.86314 0.83290 0.83326 0.74520 0.93565 0.89230 0.90351 0.93523 0.92287 0.91996 0.93567 0.84279 0.82520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.15 10.50 -92.43 -0.97 -6.12 16 3 C 0.13 2.28 6.69 22.51 0.15 2.43 16 4 C -0.16 -2.72 9.99 22.37 0.22 -2.49 16 5 C -0.05 -0.93 9.66 22.25 0.22 -0.72 16 6 C -0.16 -3.31 4.64 -19.85 -0.09 -3.41 16 7 C 0.18 4.73 2.29 44.24 0.10 4.83 16 8 H 0.13 3.54 7.43 -2.39 -0.02 3.53 16 9 N -0.72 -20.67 4.81 -461.40 -2.22 -22.89 16 10 C 0.70 27.53 7.81 179.06 1.40 28.93 16 11 O -0.62 -29.44 14.24 -3.99 -0.06 -29.50 16 12 N -0.61 -24.59 2.75 -844.84 -2.33 -26.92 16 13 C 0.09 2.61 9.39 127.77 1.20 3.81 16 14 C 0.25 11.96 2.22 44.24 0.10 12.06 16 15 H 0.03 1.76 5.56 -2.39 -0.01 1.75 16 16 C -0.15 -6.39 8.96 71.98 0.64 -5.75 16 17 C -0.60 -33.39 8.68 25.60 0.22 -33.16 16 18 H 0.03 1.91 7.75 -2.91 -0.02 1.89 16 19 C -0.01 -0.49 5.30 84.65 0.45 -0.04 16 20 N -0.93 -57.10 13.70 21.45 0.29 -56.81 16 21 Si 1.07 51.08 26.29 68.60 1.80 52.89 16 22 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.24 -10.02 5.74 99.48 0.57 -9.45 16 24 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 25 C 0.44 11.93 2.82 71.98 0.20 12.14 16 26 F -0.18 -4.47 16.15 44.97 0.73 -3.74 16 27 F -0.18 -4.51 17.02 44.97 0.77 -3.74 16 28 F -0.19 -6.39 15.67 44.97 0.70 -5.68 16 29 C -0.06 -1.01 8.28 22.25 0.18 -0.83 16 30 C -0.20 -3.07 9.04 22.37 0.20 -2.86 16 31 H 0.07 0.39 7.66 -2.38 -0.02 0.37 16 32 H 0.07 0.41 7.66 -2.39 -0.02 0.39 16 33 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.15 2.28 8.03 -2.91 -0.02 2.25 16 36 H 0.41 9.29 4.61 -92.71 -0.43 8.86 16 37 H 0.05 1.45 8.09 -2.39 -0.02 1.43 16 38 H 0.09 1.89 6.36 -2.39 -0.02 1.88 16 39 H 0.08 2.39 6.33 -2.39 -0.02 2.37 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.06 2.53 4.85 -2.39 -0.01 2.52 16 42 H 0.06 2.36 6.44 -2.39 -0.02 2.34 16 43 H 0.26 15.71 8.73 -92.71 -0.81 14.90 16 44 H 0.14 1.99 6.78 -2.91 -0.02 1.97 16 45 H 0.16 1.49 6.30 -2.91 -0.02 1.48 16 Total: -1.00 -74.57 373.57 5.49 -69.08 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.46 Total: 17.28 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 6.31 Total: 16.16 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -4.25 Total: -106.62 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.03 Total: -35.62 kcal Atomic # 9 Polarization: -15.36 SS G_CDS: 2.20 Total: -13.17 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 1.80 Total: 52.89 kcal Total: -74.57 5.49 -69.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097100292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.365 kcal (2) G-P(sol) polarization free energy of solvation -74.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds