Wall clock time and date at job start Tue Mar 31 2020 06:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00263 * 2 1 4 4 H 1.48503 * 109.47003 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47403 * 120.00137 * 3 2 1 6 6 H 1.48500 * 109.47099 * 240.00580 * 3 2 1 7 7 C 1.37875 * 119.99869 * 180.27456 * 2 1 3 8 8 H 1.08000 * 120.00211 * 179.72290 * 7 2 1 9 9 C 1.50704 * 120.00233 * 359.72380 * 7 2 1 10 10 N 1.46498 * 109.47298 * 179.97438 * 9 7 2 11 11 C 1.34965 * 125.97361 * 124.71571 * 10 9 7 12 12 C 1.35239 * 107.85556 * 179.83792 * 11 10 9 13 13 C 1.40399 * 107.86925 * 0.42377 * 12 11 10 14 14 N 1.40201 * 125.97328 * 179.75367 * 13 12 11 15 15 C 1.34777 * 119.99827 * 0.02562 * 14 13 12 16 16 O 1.21595 * 120.00187 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99790 * 179.97438 * 15 14 13 18 18 C 1.46500 * 119.99793 * 179.97438 * 17 15 14 19 19 H 1.08998 * 109.47291 * 34.99831 * 18 17 15 20 20 C 1.53003 * 109.47036 * 155.00199 * 18 17 15 21 21 C 1.54265 * 110.03505 * 55.05697 * 20 18 17 22 22 C 1.54889 * 104.19696 * 217.10749 * 21 20 18 23 23 C 1.54895 * 102.74810 * 37.94374 * 22 21 20 24 24 C 1.53885 * 110.02758 * 297.89156 * 20 18 17 25 25 C 1.53000 * 109.47029 * 274.99365 * 18 17 15 26 26 F 1.39904 * 109.46995 * 65.49684 * 25 18 17 27 27 F 1.39905 * 109.47097 * 185.49040 * 25 18 17 28 28 F 1.39898 * 109.47675 * 305.49518 * 25 18 17 29 29 N 1.31202 * 108.05588 * 359.73934 * 13 12 11 30 30 H 0.97001 * 119.99978 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47026 * 300.00344 * 9 7 2 32 32 H 1.09003 * 109.46681 * 59.99596 * 9 7 2 33 33 H 1.08003 * 126.07104 * 0.02562 * 11 10 9 34 34 H 1.08004 * 126.06789 * 180.16509 * 12 11 10 35 35 H 0.96997 * 119.99935 * 179.97438 * 14 13 12 36 36 H 0.97005 * 120.00214 * 359.97438 * 17 15 14 37 37 H 1.09002 * 110.01539 * 176.50693 * 20 18 17 38 38 H 1.09001 * 110.48792 * 335.78344 * 21 20 18 39 39 H 1.08996 * 110.48422 * 98.43485 * 21 20 18 40 40 H 1.08998 * 110.75647 * 279.63148 * 22 21 20 41 41 H 1.08995 * 110.91799 * 156.32673 * 22 21 20 42 42 H 1.09005 * 110.48550 * 203.37945 * 23 22 21 43 43 H 1.08994 * 110.59828 * 80.78952 * 23 22 21 44 44 H 1.08996 * 110.02788 * 238.57228 * 24 20 18 45 45 H 1.08996 * 110.02862 * 359.95175 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6964 1.2124 6 1 3.1029 1.6964 -1.2126 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1941 -0.0102 9 6 1.2510 -2.4992 -0.0057 10 7 2.2030 -3.6127 -0.0129 11 6 2.2495 -4.6218 0.8821 12 6 3.2629 -5.4442 0.5275 13 6 3.8661 -4.9130 -0.6236 14 7 4.9592 -5.4621 -1.3086 15 6 5.5251 -6.6038 -0.8696 16 8 5.0879 -7.1574 0.1208 17 7 6.5755 -7.1320 -1.5285 18 6 7.1909 -8.3727 -1.0510 19 1 6.4214 -9.0238 -0.6362 20 6 7.8834 -9.0804 -2.2175 21 6 8.8891 -8.1254 -2.8929 22 6 8.7786 -8.4619 -4.4008 23 6 7.2629 -8.7243 -4.5822 24 6 6.8493 -9.4612 -3.2916 25 6 8.2215 -8.0470 0.0319 26 9 7.5707 -7.5141 1.1499 27 9 8.8975 -9.2155 0.3990 28 9 9.1386 -7.1135 -0.4627 29 7 3.2280 -3.8130 -0.9464 30 1 -0.4850 -0.8401 0.0004 31 1 0.6281 -2.5590 0.8867 32 1 0.6206 -2.5547 -0.8932 33 1 1.5920 -4.7514 1.7290 34 1 3.5586 -6.3470 1.0413 35 1 5.3077 -5.0207 -2.0989 36 1 6.9241 -6.6906 -2.3188 37 1 8.3969 -9.9731 -1.8604 38 1 8.6100 -7.0874 -2.7123 39 1 9.8995 -8.3181 -2.5322 40 1 9.3565 -9.3543 -4.6408 41 1 9.1005 -7.6190 -5.0122 42 1 7.0864 -9.3540 -5.4543 43 1 6.7194 -7.7841 -4.6755 44 1 6.8617 -10.5385 -3.4563 45 1 5.8542 -9.1426 -2.9813 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097135449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:03 Heat of formation + Delta-G solvation = -107.410913 kcal Electronic energy + Delta-G solvation = -33155.624884 eV Core-core repulsion = 28180.778531 eV Total energy + Delta-G solvation = -4974.846353 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.151 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.26442 -47.80516 -47.65770 -40.99106 -40.12523 -38.76981 -35.22956 -34.72787 -33.69724 -31.44049 -30.32547 -29.37910 -29.24765 -27.38458 -26.23905 -23.75003 -22.98215 -22.10465 -21.27717 -20.65311 -20.33232 -19.92173 -18.74770 -18.49271 -18.25698 -18.02394 -17.19067 -16.81076 -16.01745 -15.94625 -15.43544 -15.23642 -14.82978 -14.59109 -14.47145 -14.17270 -14.15861 -14.09238 -13.88395 -13.81865 -13.78543 -13.77052 -13.53559 -13.19775 -12.90664 -12.46219 -12.27681 -11.85946 -11.63101 -11.58142 -11.50526 -11.47278 -11.19003 -11.17432 -11.00681 -10.82882 -10.52319 -10.25361 -10.16499 -9.82206 -9.71837 -9.00714 -8.58669 -8.22318 -7.52289 -6.58579 -4.32646 1.97596 2.35257 2.62105 2.97762 3.31458 3.37893 3.39183 3.47130 3.57846 3.58686 3.74680 3.94474 4.03137 4.06045 4.21597 4.31475 4.40788 4.64281 4.75035 4.92618 4.95349 5.03311 5.14875 5.16735 5.19859 5.37984 5.39570 5.47031 5.63242 5.65644 5.67177 5.76092 5.83199 5.88928 6.08977 6.32396 6.42730 6.60549 6.73487 6.82596 7.34940 7.57819 7.76382 7.82885 8.33773 8.35270 8.53166 8.61486 9.35522 10.78989 Molecular weight = 360.15amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.002248 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.482793 B =12452.185170 C =12754.139752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.318 5.318 11 C 0.051 3.949 12 C -0.282 4.282 13 C 0.276 3.724 14 N -0.638 5.638 15 C 0.713 3.287 16 O -0.551 6.551 17 N -0.732 5.732 18 C 0.137 3.863 19 H 0.134 0.866 20 C -0.104 4.104 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.117 4.117 25 C 0.433 3.567 26 F -0.168 7.168 27 F -0.183 7.183 28 F -0.182 7.182 29 N -0.302 5.302 30 H 0.267 0.733 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.168 0.832 34 H 0.163 0.837 35 H 0.408 0.592 36 H 0.406 0.594 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.992 -21.598 -7.387 29.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.903 3.097 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.646 4.646 8 H 0.082 0.918 9 C 0.132 3.868 10 N -0.100 5.100 11 C -0.099 4.099 12 C -0.313 4.313 13 C 0.022 3.978 14 N -0.287 5.287 15 C 0.412 3.588 16 O -0.425 6.425 17 N -0.391 5.391 18 C 0.028 3.972 19 H 0.152 0.848 20 C -0.123 4.123 21 C -0.167 4.167 22 C -0.162 4.162 23 C -0.164 4.164 24 C -0.155 4.155 25 C 0.377 3.623 26 F -0.149 7.149 27 F -0.165 7.165 28 F -0.163 7.163 29 N -0.133 5.133 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.243 0.757 36 H 0.244 0.756 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.206 -19.368 -7.264 26.906 hybrid contribution 0.791 -1.786 0.109 1.956 sum 17.998 -21.153 -7.155 28.681 Atomic orbital electron populations 1.70853 1.06777 1.30427 1.45973 1.25921 0.96313 1.02805 0.93140 0.83422 0.74810 0.74571 0.76851 1.20524 1.21224 1.21149 1.22106 0.95384 0.90450 1.56670 0.91845 1.19756 0.86296 0.82820 0.97975 1.48773 1.23404 1.19567 1.18218 1.22562 1.00496 0.90117 0.96697 1.21516 1.02038 1.06355 1.01435 1.18741 0.90693 0.94066 0.94350 1.41253 1.31648 1.24560 1.31256 1.15601 0.79810 0.80496 0.82857 1.90921 1.64000 1.61781 1.25785 1.44953 1.34110 1.26984 1.33084 1.21951 0.94371 0.87698 0.93216 0.84792 1.22207 0.96921 0.99232 0.93952 1.22635 0.99208 0.99170 0.95700 1.22508 0.96377 1.01753 0.95518 1.22391 0.95940 1.00639 0.97413 1.22167 0.98491 1.00957 0.93884 1.21306 0.82311 0.74617 0.84098 1.93292 1.80617 1.86405 1.54563 1.93166 1.81892 1.48771 1.92652 1.93163 1.69065 1.66777 1.87329 1.77343 1.03695 1.16084 1.16201 0.92274 0.93599 0.94793 0.81491 0.81972 0.75699 0.75623 0.87889 0.90816 0.90573 0.91206 0.91124 0.91299 0.91385 0.90879 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 13.65 55.43 0.76 -25.56 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 24.93 29.90 -169.99 -5.08 19.84 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.61 -17.09 9.24 -34.44 -0.32 -17.41 16 8 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.25 6.30 5.57 -5.19 -0.03 6.27 16 10 N -0.32 -7.39 3.67 -62.56 -0.23 -7.62 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 C -0.28 -5.55 9.61 -39.84 -0.38 -5.93 16 13 C 0.28 5.45 8.11 -154.36 -1.25 4.19 16 14 N -0.64 -9.47 5.46 -15.51 -0.08 -9.55 16 15 C 0.71 9.74 8.19 -86.92 -0.71 9.03 16 16 O -0.55 -9.25 12.04 5.28 0.06 -9.19 16 17 N -0.73 -6.67 4.19 -58.67 -0.25 -6.91 16 18 C 0.14 1.13 1.69 -67.93 -0.11 1.02 16 19 H 0.13 1.18 7.58 -51.93 -0.39 0.78 16 20 C -0.10 -0.58 2.65 -89.50 -0.24 -0.82 16 21 C -0.13 -0.69 4.53 -25.07 -0.11 -0.80 16 22 C -0.12 -0.55 6.91 -24.74 -0.17 -0.73 16 23 C -0.13 -0.60 6.83 -25.07 -0.17 -0.77 16 24 C -0.12 -0.60 6.22 -25.61 -0.16 -0.76 16 25 C 0.43 4.46 2.81 37.16 0.10 4.57 16 26 F -0.17 -2.33 15.85 2.25 0.04 -2.30 16 27 F -0.18 -1.77 16.54 2.25 0.04 -1.73 16 28 F -0.18 -1.86 14.65 2.25 0.03 -1.82 16 29 N -0.30 -6.92 12.42 31.44 0.39 -6.53 16 30 H 0.27 7.59 7.22 -40.82 -0.29 7.29 16 31 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 32 H 0.03 0.89 8.00 -51.93 -0.42 0.47 16 33 H 0.17 2.72 8.06 -52.48 -0.42 2.30 16 34 H 0.16 3.11 5.91 -52.48 -0.31 2.80 16 35 H 0.41 4.84 8.84 -40.82 -0.36 4.48 16 36 H 0.41 2.74 6.69 -40.82 -0.27 2.47 16 37 H 0.10 0.50 7.59 -51.93 -0.39 0.11 16 38 H 0.07 0.42 5.32 -51.93 -0.28 0.14 16 39 H 0.08 0.42 8.01 -51.93 -0.42 0.00 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.47 7.45 -51.93 -0.39 0.09 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -33.73 376.06 -8.18 -41.92 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.68 Total: 4.58 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -3.85 Total: -0.78 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.59 Total: -56.18 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.06 Total: -9.19 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.11 Total: -5.85 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.73 -8.18 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097135449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.495 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds