Wall clock time and date at job start Tue Mar 31 2020 06:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00263 * 2 1 4 4 H 1.48503 * 109.47003 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47403 * 120.00137 * 3 2 1 6 6 H 1.48500 * 109.47099 * 240.00580 * 3 2 1 7 7 C 1.37875 * 119.99869 * 180.27456 * 2 1 3 8 8 H 1.08000 * 120.00211 * 179.72290 * 7 2 1 9 9 C 1.50704 * 120.00233 * 359.72380 * 7 2 1 10 10 N 1.46498 * 109.47298 * 179.97438 * 9 7 2 11 11 C 1.34965 * 125.97361 * 124.71571 * 10 9 7 12 12 C 1.35239 * 107.85556 * 179.83792 * 11 10 9 13 13 C 1.40399 * 107.86925 * 0.42377 * 12 11 10 14 14 N 1.40201 * 125.97328 * 179.75367 * 13 12 11 15 15 C 1.34777 * 119.99827 * 0.02562 * 14 13 12 16 16 O 1.21595 * 120.00187 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99790 * 179.97438 * 15 14 13 18 18 C 1.46500 * 119.99793 * 179.97438 * 17 15 14 19 19 H 1.08998 * 109.47291 * 34.99831 * 18 17 15 20 20 C 1.53003 * 109.47036 * 155.00199 * 18 17 15 21 21 C 1.54265 * 110.03505 * 55.05697 * 20 18 17 22 22 C 1.54889 * 104.19696 * 217.10749 * 21 20 18 23 23 C 1.54895 * 102.74810 * 37.94374 * 22 21 20 24 24 C 1.53885 * 110.02758 * 297.89156 * 20 18 17 25 25 C 1.53000 * 109.47029 * 274.99365 * 18 17 15 26 26 F 1.39904 * 109.46995 * 65.49684 * 25 18 17 27 27 F 1.39905 * 109.47097 * 185.49040 * 25 18 17 28 28 F 1.39898 * 109.47675 * 305.49518 * 25 18 17 29 29 N 1.31202 * 108.05588 * 359.73934 * 13 12 11 30 30 H 0.97001 * 119.99978 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47026 * 300.00344 * 9 7 2 32 32 H 1.09003 * 109.46681 * 59.99596 * 9 7 2 33 33 H 1.08003 * 126.07104 * 0.02562 * 11 10 9 34 34 H 1.08004 * 126.06789 * 180.16509 * 12 11 10 35 35 H 0.96997 * 119.99935 * 179.97438 * 14 13 12 36 36 H 0.97005 * 120.00214 * 359.97438 * 17 15 14 37 37 H 1.09002 * 110.01539 * 176.50693 * 20 18 17 38 38 H 1.09001 * 110.48792 * 335.78344 * 21 20 18 39 39 H 1.08996 * 110.48422 * 98.43485 * 21 20 18 40 40 H 1.08998 * 110.75647 * 279.63148 * 22 21 20 41 41 H 1.08995 * 110.91799 * 156.32673 * 22 21 20 42 42 H 1.09005 * 110.48550 * 203.37945 * 23 22 21 43 43 H 1.08994 * 110.59828 * 80.78952 * 23 22 21 44 44 H 1.08996 * 110.02788 * 238.57228 * 24 20 18 45 45 H 1.08996 * 110.02862 * 359.95175 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6964 1.2124 6 1 3.1029 1.6964 -1.2126 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1941 -0.0102 9 6 1.2510 -2.4992 -0.0057 10 7 2.2030 -3.6127 -0.0129 11 6 2.2495 -4.6218 0.8821 12 6 3.2629 -5.4442 0.5275 13 6 3.8661 -4.9130 -0.6236 14 7 4.9592 -5.4621 -1.3086 15 6 5.5251 -6.6038 -0.8696 16 8 5.0879 -7.1574 0.1208 17 7 6.5755 -7.1320 -1.5285 18 6 7.1909 -8.3727 -1.0510 19 1 6.4214 -9.0238 -0.6362 20 6 7.8834 -9.0804 -2.2175 21 6 8.8891 -8.1254 -2.8929 22 6 8.7786 -8.4619 -4.4008 23 6 7.2629 -8.7243 -4.5822 24 6 6.8493 -9.4612 -3.2916 25 6 8.2215 -8.0470 0.0319 26 9 7.5707 -7.5141 1.1499 27 9 8.8975 -9.2155 0.3990 28 9 9.1386 -7.1135 -0.4627 29 7 3.2280 -3.8130 -0.9464 30 1 -0.4850 -0.8401 0.0004 31 1 0.6281 -2.5590 0.8867 32 1 0.6206 -2.5547 -0.8932 33 1 1.5920 -4.7514 1.7290 34 1 3.5586 -6.3470 1.0413 35 1 5.3077 -5.0207 -2.0989 36 1 6.9241 -6.6906 -2.3188 37 1 8.3969 -9.9731 -1.8604 38 1 8.6100 -7.0874 -2.7123 39 1 9.8995 -8.3181 -2.5322 40 1 9.3565 -9.3543 -4.6408 41 1 9.1005 -7.6190 -5.0122 42 1 7.0864 -9.3540 -5.4543 43 1 6.7194 -7.7841 -4.6755 44 1 6.8617 -10.5385 -3.4563 45 1 5.8542 -9.1426 -2.9813 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097135449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:02 Heat of formation + Delta-G solvation = -127.565120 kcal Electronic energy + Delta-G solvation = -33156.498836 eV Core-core repulsion = 28180.778531 eV Total energy + Delta-G solvation = -4975.720305 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.151 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -51.12364 -48.62199 -48.59584 -42.37019 -41.30487 -39.51383 -36.53021 -35.75043 -35.55712 -32.87956 -31.45929 -30.97031 -29.65031 -28.22024 -27.90940 -25.29662 -24.27586 -23.15936 -22.30973 -21.77813 -21.28970 -20.79214 -19.66427 -19.43818 -19.25049 -19.18169 -18.89177 -18.18452 -17.07877 -16.78482 -16.49762 -16.23811 -15.97521 -15.84585 -15.60278 -15.48133 -15.41653 -15.03608 -15.01628 -14.81504 -14.75497 -14.63515 -14.29987 -14.17164 -14.11656 -13.92180 -13.71040 -13.61935 -13.22216 -12.61884 -12.15758 -12.10229 -12.01539 -11.95562 -11.90934 -11.88004 -11.72844 -11.61288 -11.40291 -11.23482 -11.01236 -10.69447 -10.62576 -9.83351 -9.18458 -8.76948 -6.55459 0.84809 0.96675 1.47721 1.51519 1.57516 1.75512 1.79162 1.90793 2.29571 2.48550 2.73783 2.81155 2.92514 3.01557 3.23692 3.52748 3.58511 3.76464 3.85049 4.10238 4.14904 4.19878 4.50423 4.55414 4.56694 4.60417 4.66339 4.69609 4.77519 4.81925 4.84843 4.88450 5.03764 5.11615 5.16588 5.27421 5.29717 5.39249 5.49963 5.53232 5.66630 5.82531 5.94048 6.27377 6.41829 6.53226 7.00454 7.20203 7.22668 8.58876 Molecular weight = 360.15amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.002248 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.482793 B =12452.185170 C =12754.139752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.019 4.019 3 Si 1.119 2.881 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.621 4.621 8 H 0.045 0.955 9 C 0.260 3.740 10 N -0.344 5.344 11 C 0.055 3.945 12 C -0.287 4.287 13 C 0.287 3.713 14 N -0.631 5.631 15 C 0.715 3.285 16 O -0.580 6.580 17 N -0.711 5.711 18 C 0.140 3.860 19 H 0.132 0.868 20 C -0.096 4.096 21 C -0.131 4.131 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.115 4.115 25 C 0.430 3.570 26 F -0.191 7.191 27 F -0.178 7.178 28 F -0.181 7.181 29 N -0.344 5.344 30 H 0.261 0.739 31 H 0.054 0.946 32 H 0.017 0.983 33 H 0.201 0.799 34 H 0.170 0.830 35 H 0.422 0.578 36 H 0.420 0.580 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.622 -22.535 -8.043 30.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.218 4.218 3 Si 0.940 3.060 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.659 4.659 8 H 0.063 0.937 9 C 0.141 3.859 10 N -0.126 5.126 11 C -0.093 4.093 12 C -0.318 4.318 13 C 0.031 3.969 14 N -0.283 5.283 15 C 0.414 3.586 16 O -0.456 6.456 17 N -0.370 5.370 18 C 0.032 3.968 19 H 0.150 0.850 20 C -0.115 4.115 21 C -0.169 4.169 22 C -0.156 4.156 23 C -0.164 4.164 24 C -0.152 4.152 25 C 0.374 3.626 26 F -0.173 7.173 27 F -0.160 7.160 28 F -0.162 7.162 29 N -0.175 5.175 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.217 0.783 34 H 0.188 0.812 35 H 0.259 0.741 36 H 0.260 0.740 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.886 -20.351 -7.958 28.882 hybrid contribution 0.388 -1.662 0.309 1.735 sum 19.274 -22.013 -7.649 30.242 Atomic orbital electron populations 1.70946 1.07450 1.30195 1.47370 1.27258 0.96439 1.06043 0.92101 0.82888 0.74149 0.71171 0.77796 1.19997 1.19753 1.19989 1.22293 0.94684 0.92159 1.56805 0.93664 1.19411 0.86399 0.82759 0.97360 1.48552 1.24129 1.20190 1.19726 1.23168 1.00679 0.88806 0.96673 1.21702 1.02034 1.06531 1.01555 1.19028 0.90829 0.92923 0.94124 1.41253 1.30583 1.24954 1.31491 1.15715 0.80323 0.79917 0.82633 1.90896 1.65079 1.62439 1.27187 1.44776 1.32489 1.27016 1.32762 1.22125 0.93953 0.87014 0.93755 0.85024 1.22244 0.96941 0.99374 0.92910 1.22649 0.99066 0.98754 0.96406 1.22482 0.96198 1.02218 0.94738 1.22404 0.96109 1.00569 0.97359 1.22154 0.97548 1.01755 0.93771 1.21591 0.82676 0.74595 0.83768 1.93247 1.81158 1.86846 1.56037 1.93173 1.81801 1.48358 1.92645 1.93165 1.69077 1.66844 1.87163 1.77259 1.04850 1.17989 1.17398 0.92941 0.92872 0.96489 0.78264 0.81240 0.74060 0.73976 0.86549 0.91277 0.90504 0.90512 0.90796 0.90763 0.91680 0.89735 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.02 13.65 21.45 0.29 -53.73 16 2 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 3 Si 1.12 49.76 29.90 68.60 2.05 51.81 16 4 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.62 -35.39 9.24 25.60 0.24 -35.16 16 8 H 0.04 2.70 7.81 -2.91 -0.02 2.67 16 9 C 0.26 13.37 5.57 85.63 0.48 13.85 16 10 N -0.34 -16.13 3.67 -351.84 -1.29 -17.43 16 11 C 0.05 2.15 11.44 83.52 0.96 3.11 16 12 C -0.29 -11.12 9.61 22.10 0.21 -10.91 16 13 C 0.29 11.24 8.11 133.31 1.08 12.32 16 14 N -0.63 -18.21 5.46 -321.23 -1.75 -19.97 16 15 C 0.71 18.79 8.19 179.05 1.47 20.26 16 16 O -0.58 -19.03 12.04 -4.02 -0.05 -19.08 16 17 N -0.71 -11.93 4.19 -457.80 -1.92 -13.85 16 18 C 0.14 2.11 1.69 44.99 0.08 2.18 16 19 H 0.13 2.14 7.58 -2.39 -0.02 2.12 16 20 C -0.10 -0.86 2.65 -10.07 -0.03 -0.88 16 21 C -0.13 -1.10 4.53 31.67 0.14 -0.96 16 22 C -0.12 -0.77 6.91 31.89 0.22 -0.55 16 23 C -0.13 -0.92 6.83 31.67 0.22 -0.70 16 24 C -0.11 -0.93 6.22 31.32 0.19 -0.73 16 25 C 0.43 8.34 2.81 71.98 0.20 8.54 16 26 F -0.19 -5.23 15.85 44.97 0.71 -4.52 16 27 F -0.18 -3.19 16.54 44.97 0.74 -2.44 16 28 F -0.18 -3.44 14.65 44.97 0.66 -2.78 16 29 N -0.34 -15.88 12.42 -54.44 -0.68 -16.56 16 30 H 0.26 15.08 7.22 -92.71 -0.67 14.41 16 31 H 0.05 2.63 7.94 -2.39 -0.02 2.61 16 32 H 0.02 0.93 8.00 -2.39 -0.02 0.91 16 33 H 0.20 6.21 8.06 -2.91 -0.02 6.18 16 34 H 0.17 6.37 5.91 -2.91 -0.02 6.35 16 35 H 0.42 9.57 8.84 -92.71 -0.82 8.75 16 36 H 0.42 4.90 6.69 -92.70 -0.62 4.28 16 37 H 0.12 0.81 7.59 -2.39 -0.02 0.79 16 38 H 0.07 0.64 5.32 -2.39 -0.01 0.63 16 39 H 0.08 0.67 8.01 -2.39 -0.02 0.65 16 40 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.07 0.48 8.14 -2.38 -0.02 0.47 16 43 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.06 0.68 7.45 -2.39 -0.02 0.66 16 Total: -1.00 -72.71 376.06 4.42 -68.29 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -0.27 Total: 20.47 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 5.92 Total: 9.77 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -5.34 Total: -121.52 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.05 Total: -19.08 kcal Atomic # 9 Polarization: -11.86 SS G_CDS: 2.12 Total: -9.74 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.05 Total: 51.81 kcal Total: -72.71 4.42 -68.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097135449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.271 kcal (2) G-P(sol) polarization free energy of solvation -72.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds