Wall clock time and date at job start Tue Mar 31 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86810 * 119.99869 * 2 1 4 4 H 1.48499 * 109.47051 * 270.00079 * 3 2 1 5 5 H 1.48497 * 109.46931 * 30.00224 * 3 2 1 6 6 H 1.48502 * 109.46829 * 150.00327 * 3 2 1 7 7 C 1.37877 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99828 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00090 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97363 * 125.00046 * 10 9 7 12 12 C 1.35236 * 107.85724 * 179.97438 * 11 10 9 13 13 C 1.40397 * 107.86886 * 0.25931 * 12 11 10 14 14 N 1.40202 * 125.97453 * 179.70175 * 13 12 11 15 15 C 1.34783 * 119.99851 * 0.02562 * 14 13 12 16 16 O 1.21592 * 119.99715 * 359.97438 * 15 14 13 17 17 N 1.34769 * 119.99952 * 179.97438 * 15 14 13 18 18 C 1.46499 * 120.00005 * 180.02562 * 17 15 14 19 19 H 1.08999 * 109.46955 * 325.00028 * 18 17 15 20 20 C 1.53002 * 109.47141 * 205.00416 * 18 17 15 21 21 C 1.54266 * 110.03106 * 172.11852 * 20 18 17 22 22 C 1.54972 * 104.15525 * 217.13472 * 21 20 18 23 23 C 1.54882 * 102.77992 * 37.88766 * 22 21 20 24 24 C 1.53874 * 110.03634 * 54.89823 * 20 18 17 25 25 C 1.53001 * 109.47246 * 85.00340 * 18 17 15 26 26 F 1.39900 * 109.46892 * 65.30645 * 25 18 17 27 27 F 1.39897 * 109.47348 * 185.30946 * 25 18 17 28 28 F 1.39901 * 109.46747 * 305.30763 * 25 18 17 29 29 N 1.31210 * 108.05481 * 359.56087 * 13 12 11 30 30 H 0.96999 * 120.00427 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47556 * 59.99853 * 9 7 2 32 32 H 1.08999 * 109.47190 * 299.99118 * 9 7 2 33 33 H 1.08005 * 126.07082 * 359.97438 * 11 10 9 34 34 H 1.08007 * 126.06518 * 179.97438 * 12 11 10 35 35 H 0.96996 * 120.00448 * 180.02562 * 14 13 12 36 36 H 0.97003 * 119.99913 * 0.02562 * 17 15 14 37 37 H 1.08996 * 110.01535 * 293.50466 * 20 18 17 38 38 H 1.08996 * 110.48833 * 335.77756 * 21 20 18 39 39 H 1.08997 * 110.48737 * 98.42917 * 21 20 18 40 40 H 1.08996 * 110.71722 * 279.57060 * 22 21 20 41 41 H 1.09004 * 110.76074 * 156.22271 * 22 21 20 42 42 H 1.08999 * 110.49097 * 203.40427 * 23 22 21 43 43 H 1.09001 * 110.59964 * 80.81313 * 23 22 21 44 44 H 1.09003 * 110.03156 * 238.57257 * 24 20 18 45 45 H 1.09000 * 110.02726 * 359.97438 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.8545 -3.1140 -0.8959 12 6 5.0561 -4.4060 -0.5509 13 6 4.2909 -4.6700 0.5962 14 7 4.2146 -5.8966 1.2710 15 6 4.9183 -6.9561 0.8249 16 8 5.6189 -6.8481 -0.1630 17 7 4.8454 -8.1350 1.4738 18 6 5.6106 -9.2864 0.9892 19 1 5.6525 -9.2626 -0.0997 20 6 4.9309 -10.5791 1.4453 21 6 5.6088 -11.7953 0.7813 22 6 4.4389 -12.7689 0.4896 23 6 3.2963 -11.8137 0.0642 24 6 3.4611 -10.5908 0.9901 25 6 7.0309 -9.2297 1.5556 26 9 6.9850 -9.3819 2.9455 27 9 7.7965 -10.2597 0.9987 28 9 7.6096 -7.9957 1.2403 29 7 3.6621 -3.5673 0.9282 30 1 -0.4851 0.8400 0.0004 31 1 3.8753 -0.6803 0.8888 32 1 3.8745 -0.6800 -0.8912 33 1 5.2985 -2.6040 -1.7381 34 1 5.6895 -5.1111 -1.0689 35 1 3.6554 -5.9828 2.0588 36 1 4.2861 -8.2212 2.2617 37 1 4.9865 -10.6670 2.5303 38 1 6.0990 -11.4996 -0.1462 39 1 6.3254 -12.2524 1.4637 40 1 4.1652 -13.3228 1.3875 41 1 4.6958 -13.4494 -0.3222 42 1 2.3262 -12.2846 0.2233 43 1 3.4103 -11.5202 -0.9793 44 1 2.8034 -10.6853 1.8541 45 1 3.2320 -9.6754 0.4446 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097135450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:08 Heat of formation + Delta-G solvation = -102.324170 kcal Electronic energy + Delta-G solvation = -32859.889339 eV Core-core repulsion = 27885.263564 eV Total energy + Delta-G solvation = -4974.625775 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.151 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.26856 -47.80769 -47.66961 -40.93662 -40.02026 -38.72996 -35.36063 -34.74852 -33.31356 -31.55509 -30.55635 -29.39444 -29.11869 -27.43175 -26.98611 -23.75420 -22.63202 -21.85462 -21.21543 -20.63608 -20.35963 -19.81713 -18.78147 -18.46572 -18.16343 -18.07353 -17.12593 -16.80611 -16.21166 -15.70997 -15.39418 -15.30721 -14.98818 -14.60424 -14.53056 -14.41274 -14.32734 -14.16463 -13.87526 -13.82292 -13.73229 -13.64414 -13.13679 -12.99773 -12.80389 -12.55028 -12.33878 -12.16825 -11.83245 -11.55095 -11.52602 -11.45529 -11.19146 -11.12284 -10.92789 -10.79861 -10.68962 -10.21750 -10.02362 -9.84780 -9.70882 -9.53254 -8.77331 -8.20839 -7.52244 -6.24260 -4.26506 1.97933 2.37111 2.61531 2.99122 3.14613 3.21115 3.22604 3.33702 3.48080 3.58374 3.76071 3.97712 4.06594 4.09623 4.22385 4.26174 4.34138 4.69200 4.75239 4.98725 5.01154 5.03595 5.09444 5.18977 5.24866 5.39067 5.45736 5.51212 5.64267 5.68399 5.71633 5.82462 5.85121 5.91856 6.09593 6.27512 6.43446 6.51115 6.68202 6.80987 7.26114 7.36484 7.72136 7.81394 8.32779 8.37383 8.55371 8.85341 9.30820 10.88421 Molecular weight = 360.15amu Principal moments of inertia in cm(-1) A = 0.018777 B = 0.002117 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.848885 B =13222.583368 C =14107.247742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.319 5.319 11 C 0.051 3.949 12 C -0.281 4.281 13 C 0.277 3.723 14 N -0.638 5.638 15 C 0.715 3.285 16 O -0.552 6.552 17 N -0.735 5.735 18 C 0.137 3.863 19 H 0.134 0.866 20 C -0.105 4.105 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.126 4.126 24 C -0.119 4.119 25 C 0.433 3.567 26 F -0.185 7.185 27 F -0.180 7.180 28 F -0.168 7.168 29 N -0.298 5.298 30 H 0.268 0.732 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.409 0.591 36 H 0.407 0.593 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.428 -25.475 3.179 28.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.572 4.572 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.101 5.101 11 C -0.098 4.098 12 C -0.312 4.312 13 C 0.023 3.977 14 N -0.287 5.287 15 C 0.414 3.586 16 O -0.426 6.426 17 N -0.392 5.392 18 C 0.028 3.972 19 H 0.152 0.848 20 C -0.124 4.124 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.157 4.157 25 C 0.377 3.623 26 F -0.167 7.167 27 F -0.162 7.162 28 F -0.149 7.149 29 N -0.128 5.128 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.186 0.814 34 H 0.180 0.820 35 H 0.244 0.756 36 H 0.243 0.757 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.080 -24.527 3.099 27.092 hybrid contribution 0.558 0.636 0.408 0.939 sum 11.638 -23.891 3.506 26.805 Atomic orbital electron populations 1.69868 1.06158 1.27304 1.49193 1.24833 0.94869 0.98801 0.94265 0.86910 0.80451 0.83837 0.78934 1.19697 1.20543 1.18854 1.21105 0.87787 0.95686 1.52630 0.89648 1.20048 0.97439 0.72999 0.98209 1.48600 1.32628 1.10249 1.18637 1.22557 0.95883 0.94666 0.96699 1.21524 1.11261 0.96740 1.01684 1.18744 0.98951 0.85659 0.94380 1.41257 1.48760 1.07048 1.31645 1.15565 0.80421 0.79648 0.82932 1.90911 1.42844 1.82504 1.26320 1.44850 1.51453 1.09051 1.33811 1.22092 0.85381 0.87112 1.02569 0.84824 1.22171 0.96566 0.91596 1.02028 1.22554 0.97875 0.94305 1.01196 1.22506 0.94811 0.97366 1.01374 1.22374 0.98835 0.95459 0.99672 1.22195 0.93715 0.99645 1.00101 1.21310 0.90742 0.74114 0.76158 1.93157 1.96856 1.95402 1.31255 1.93171 1.78314 1.59525 1.85167 1.93280 1.86321 1.42941 1.92394 1.77386 1.24015 0.95471 1.15941 0.92180 0.94043 0.93296 0.81372 0.81951 0.75575 0.75736 0.88921 0.90437 0.90720 0.91294 0.91160 0.91361 0.91274 0.90909 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.96 55.43 0.77 -25.68 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 20.04 27.47 -169.99 -4.67 15.37 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 7 C -0.53 -14.95 9.79 -34.44 -0.34 -15.29 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 C 0.23 5.46 5.33 -5.19 -0.03 5.43 16 10 N -0.32 -7.17 3.67 -62.56 -0.23 -7.39 16 11 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 12 C -0.28 -5.39 9.60 -39.84 -0.38 -5.77 16 13 C 0.28 5.40 8.11 -154.36 -1.25 4.15 16 14 N -0.64 -9.40 5.46 -15.51 -0.08 -9.49 16 15 C 0.72 9.72 7.95 -86.92 -0.69 9.03 16 16 O -0.55 -9.22 12.09 5.28 0.06 -9.15 16 17 N -0.73 -6.62 4.14 -58.67 -0.24 -6.86 16 18 C 0.14 1.15 1.51 -67.93 -0.10 1.04 16 19 H 0.13 1.23 7.44 -51.93 -0.39 0.85 16 20 C -0.10 -0.61 2.45 -89.50 -0.22 -0.83 16 21 C -0.12 -0.68 4.83 -25.03 -0.12 -0.80 16 22 C -0.12 -0.60 6.91 -24.70 -0.17 -0.77 16 23 C -0.13 -0.68 6.83 -25.08 -0.17 -0.85 16 24 C -0.12 -0.66 6.09 -25.62 -0.16 -0.82 16 25 C 0.43 4.40 2.83 37.16 0.11 4.50 16 26 F -0.19 -1.83 16.48 2.25 0.04 -1.79 16 27 F -0.18 -1.74 15.06 2.25 0.03 -1.70 16 28 F -0.17 -2.29 15.54 2.25 0.03 -2.25 16 29 N -0.30 -6.70 12.42 31.44 0.39 -6.31 16 30 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 32 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 33 H 0.17 2.54 8.06 -52.48 -0.42 2.12 16 34 H 0.16 3.05 5.91 -52.48 -0.31 2.74 16 35 H 0.41 4.82 8.84 -40.82 -0.36 4.46 16 36 H 0.41 2.51 8.55 -40.82 -0.35 2.16 16 37 H 0.09 0.48 7.51 -51.93 -0.39 0.09 16 38 H 0.08 0.46 7.25 -51.93 -0.38 0.09 16 39 H 0.07 0.41 8.00 -51.93 -0.42 -0.01 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.52 7.19 -51.93 -0.37 0.15 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -34.09 376.69 -7.89 -41.97 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.85 Total: 5.79 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -3.82 Total: 1.84 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.61 Total: -55.74 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.06 Total: -9.15 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.11 Total: -5.75 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.09 -7.89 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097135450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.352 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds