Wall clock time and date at job start Tue Mar 31 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99861 * 2 1 4 4 H 1.48507 * 109.47069 * 270.00089 * 3 2 1 5 5 H 1.48504 * 109.47084 * 30.00034 * 3 2 1 6 6 H 1.48502 * 109.47224 * 150.00170 * 3 2 1 7 7 C 1.37874 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00338 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00005 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47150 * 179.97438 * 9 7 2 11 11 N 1.40065 * 125.87330 * 270.31295 * 10 9 7 12 12 C 1.30249 * 109.69128 * 180.16223 * 11 10 9 13 13 C 1.41168 * 108.46928 * 359.57642 * 12 11 10 14 14 C 1.36308 * 125.86988 * 90.00495 * 10 9 7 15 15 N 1.33199 * 134.61952 * 359.97438 * 14 10 9 16 16 C 1.31512 * 120.68272 * 180.02562 * 15 14 10 17 17 N 1.32124 * 122.64693 * 359.97438 * 16 15 14 18 18 C 1.32858 * 121.19386 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.81367 * 179.97438 * 18 17 16 20 20 C 1.46494 * 120.00075 * 0.02562 * 19 18 17 21 21 C 1.52999 * 109.47484 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47155 * 179.97438 * 21 20 19 23 23 O 1.42905 * 109.47031 * 180.02562 * 22 21 20 24 24 C 1.42891 * 114.00060 * 180.02562 * 23 22 21 25 25 C 1.52999 * 109.47079 * 269.99993 * 24 23 22 26 26 C 1.53001 * 109.47117 * 180.02562 * 25 24 23 27 27 C 1.53002 * 109.47571 * 60.00139 * 26 25 24 28 28 C 1.53009 * 109.46491 * 299.99828 * 27 26 25 29 29 C 1.52999 * 109.47075 * 60.00254 * 28 27 26 30 30 H 0.97001 * 120.00605 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46776 * 60.00100 * 9 7 2 32 32 H 1.08998 * 109.47449 * 300.00035 * 9 7 2 33 33 H 1.08002 * 125.76682 * 179.84835 * 12 11 10 34 34 H 1.08001 * 118.67412 * 179.97438 * 16 15 14 35 35 H 0.96999 * 119.99740 * 180.02562 * 19 18 17 36 36 H 1.08997 * 109.47529 * 300.00389 * 20 19 18 37 37 H 1.09003 * 109.46889 * 59.99897 * 20 19 18 38 38 H 1.08997 * 109.47189 * 300.00762 * 21 20 19 39 39 H 1.08999 * 109.46538 * 60.00232 * 21 20 19 40 40 H 1.08994 * 109.47269 * 300.00417 * 22 21 20 41 41 H 1.08999 * 109.47153 * 60.00676 * 22 21 20 42 42 H 1.09004 * 109.47483 * 29.99908 * 24 23 22 43 43 H 1.08999 * 109.47164 * 299.99890 * 25 24 23 44 44 H 1.08999 * 109.47420 * 59.99979 * 25 24 23 45 45 H 1.09004 * 109.47251 * 299.99796 * 26 25 24 46 46 H 1.09000 * 109.47327 * 179.97438 * 26 25 24 47 47 H 1.08999 * 109.47483 * 180.02562 * 27 26 25 48 48 H 1.08997 * 109.46761 * 59.99476 * 27 26 25 49 49 H 1.08995 * 109.47063 * 300.00211 * 28 27 26 50 50 H 1.09003 * 109.46484 * 179.97438 * 28 27 26 51 51 H 1.09000 * 109.47329 * 179.97438 * 29 28 27 52 52 H 1.09004 * 109.47566 * 59.99620 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 7 4.2681 -3.3509 1.1340 12 6 4.6900 -4.5285 0.7712 13 6 4.7085 -4.5819 -0.6394 14 6 4.2658 -3.3285 -1.1055 15 7 4.1916 -3.1214 -2.4192 16 6 4.5259 -4.0688 -3.2679 17 7 4.9473 -5.2588 -2.8779 18 6 5.0555 -5.5622 -1.5890 19 7 5.4964 -6.8087 -1.1902 20 6 5.8521 -7.8154 -2.1933 21 6 6.3061 -9.0968 -1.4913 22 6 6.6769 -10.1483 -2.5390 23 8 7.1003 -11.3454 -1.8833 24 6 7.4719 -12.3970 -2.7765 25 6 6.2446 -13.2532 -3.0949 26 6 6.6426 -14.3796 -4.0507 27 6 7.7155 -15.2506 -3.3941 28 6 8.9429 -14.3943 -3.0758 29 6 8.5449 -13.2679 -2.1199 30 1 -0.4851 0.8400 0.0004 31 1 3.8752 -0.6804 0.8889 32 1 3.8746 -0.6800 -0.8911 33 1 4.9733 -5.3304 1.4369 34 1 4.4529 -3.8660 -4.3261 35 1 5.5706 -7.0177 -0.2459 36 1 4.9839 -8.0301 -2.8164 37 1 6.6620 -7.4366 -2.8168 38 1 7.1743 -8.8818 -0.8685 39 1 5.4964 -9.4757 -0.8676 40 1 5.8083 -10.3631 -3.1614 41 1 7.4863 -9.7697 -3.1631 42 1 7.8652 -11.9687 -3.6985 43 1 5.8513 -13.6815 -2.1729 44 1 5.4800 -12.6327 -3.5623 45 1 7.0361 -13.9517 -4.9728 46 1 5.7683 -14.9899 -4.2772 47 1 7.9994 -16.0528 -4.0753 48 1 7.3219 -15.6785 -2.4721 49 1 9.3363 -13.9663 -3.9978 50 1 9.7071 -15.0147 -2.6076 51 1 9.4194 -12.6582 -1.8927 52 1 8.1514 -13.6959 -1.1978 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:44 Heat of formation + Delta-G solvation = 24.314926 kcal Electronic energy + Delta-G solvation = -30425.645550 eV Core-core repulsion = 26231.919755 eV Total energy + Delta-G solvation = -4193.725795 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.84242 -40.17955 -39.89628 -38.11448 -37.24538 -35.72507 -34.45442 -33.40762 -32.64406 -31.69176 -30.93398 -30.05475 -29.63197 -26.41827 -25.39341 -24.71617 -23.72757 -23.46969 -23.03074 -22.55115 -21.51452 -20.69633 -19.29478 -19.28148 -18.73511 -17.76251 -17.65234 -17.06698 -16.75010 -16.63743 -16.36926 -16.00685 -15.54199 -15.44188 -15.25409 -15.17945 -15.04832 -14.85490 -14.56720 -14.29337 -14.22070 -13.96685 -13.89474 -13.41017 -13.14066 -13.11548 -12.82121 -12.72103 -12.61780 -12.41239 -12.31625 -12.20441 -12.04323 -11.93668 -11.86135 -11.78274 -11.53847 -11.44729 -11.30572 -11.20367 -10.92240 -10.62445 -10.30251 -10.10797 -9.76762 -8.99333 -8.43758 -6.54247 -0.06284 0.50098 1.26972 1.33666 1.38324 1.46087 1.60989 1.93657 2.24405 2.71596 2.88056 2.99084 3.26712 3.36426 3.63943 3.74402 3.79980 3.82121 4.00269 4.01716 4.04617 4.11433 4.19199 4.29981 4.32962 4.41004 4.45079 4.50494 4.54587 4.58046 4.58662 4.60913 4.69363 4.71346 4.75765 4.95875 5.00941 5.09829 5.12406 5.17207 5.19290 5.23227 5.23644 5.25073 5.32860 5.40394 5.49767 5.51669 5.67461 5.85182 6.05046 6.19423 6.34680 6.44787 6.54456 6.74903 7.08653 7.42831 8.73401 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.030272 B = 0.001374 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.728327 B =20375.254293 C =20554.323587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.022 3.978 3 Si 0.953 3.047 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.243 1.243 7 C -0.550 4.550 8 H 0.020 0.980 9 C 0.251 3.749 10 N -0.367 5.367 11 N -0.288 5.288 12 C 0.102 3.898 13 C -0.347 4.347 14 C 0.338 3.662 15 N -0.604 5.604 16 C 0.377 3.623 17 N -0.615 5.615 18 C 0.517 3.483 19 N -0.683 5.683 20 C 0.137 3.863 21 C -0.121 4.121 22 C 0.066 3.934 23 O -0.401 6.401 24 C 0.088 3.912 25 C -0.140 4.140 26 C -0.117 4.117 27 C -0.123 4.123 28 C -0.115 4.115 29 C -0.116 4.116 30 H 0.274 0.726 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.240 0.760 34 H 0.232 0.768 35 H 0.424 0.576 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.060 0.940 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.066 0.934 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.100 -30.216 -8.209 37.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.178 4.178 3 Si 0.774 3.226 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.167 1.167 7 C -0.589 4.589 8 H 0.038 0.962 9 C 0.131 3.869 10 N -0.153 5.153 11 N -0.102 5.102 12 C -0.093 4.093 13 C -0.365 4.365 14 C 0.092 3.908 15 N -0.332 5.332 16 C 0.085 3.915 17 N -0.346 5.346 18 C 0.262 3.738 19 N -0.315 5.315 20 C 0.013 3.987 21 C -0.159 4.159 22 C -0.011 4.011 23 O -0.321 6.321 24 C 0.031 3.969 25 C -0.178 4.178 26 C -0.154 4.154 27 C -0.161 4.161 28 C -0.152 4.152 29 C -0.153 4.153 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.256 0.744 34 H 0.248 0.752 35 H 0.263 0.737 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.085 0.915 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.561 -29.050 -7.982 36.474 hybrid contribution -0.461 0.332 0.363 0.674 sum 20.101 -28.718 -7.620 35.873 Atomic orbital electron populations 1.70026 1.08336 1.28953 1.50251 1.25824 0.95761 1.03319 0.92860 0.85652 0.79518 0.77519 0.79954 1.18277 1.19504 1.16682 1.21226 0.90335 0.93550 1.53741 0.96207 1.19648 0.93629 0.74698 0.98907 1.48741 1.52926 1.13077 1.00546 1.76890 1.19219 1.05359 1.08767 1.24297 0.96488 0.95791 0.92683 1.19756 1.22784 0.97715 0.96220 1.19353 0.92924 0.89698 0.88834 1.67526 1.27622 1.37903 1.00130 1.25210 0.84484 0.81608 1.00219 1.68100 1.28969 1.23038 1.14469 1.17998 0.83320 0.84853 0.87584 1.44367 1.67827 1.08689 1.10664 1.21226 1.00796 0.86282 0.90380 1.21561 1.02980 0.92625 0.98721 1.22383 0.99277 0.84651 0.94829 1.87860 1.86290 1.23084 1.34850 1.22219 0.94668 0.87364 0.92686 1.22025 0.97866 0.97784 1.00159 1.21503 0.99199 0.96510 0.98209 1.21593 0.95439 0.98095 1.00937 1.21508 0.97963 0.96375 0.99366 1.21595 0.97669 0.96830 0.99242 0.91652 0.92575 0.92876 0.74353 0.75189 0.73729 0.91431 0.90884 0.89818 0.90286 0.92587 0.92101 0.91571 0.92079 0.91989 0.91434 0.91305 0.90909 0.92153 0.91342 0.90698 0.91477 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.46 13.96 21.45 0.30 -59.16 16 2 C 0.02 1.31 5.47 84.65 0.46 1.77 16 3 Si 0.95 43.67 27.47 68.60 1.88 45.56 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 7 C -0.55 -33.84 9.94 25.60 0.25 -33.59 16 8 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 9 C 0.25 13.08 5.26 85.63 0.45 13.53 16 10 N -0.37 -17.80 3.63 -348.92 -1.27 -19.06 16 11 N -0.29 -12.27 12.45 -56.46 -0.70 -12.97 16 12 C 0.10 3.26 11.87 85.65 1.02 4.28 16 13 C -0.35 -12.10 6.14 -21.29 -0.13 -12.23 16 14 C 0.34 15.02 8.04 134.15 1.08 16.10 16 15 N -0.60 -25.43 10.47 -198.10 -2.07 -27.50 16 16 C 0.38 12.08 12.24 180.87 2.21 14.29 16 17 N -0.61 -18.02 9.69 -197.01 -1.91 -19.93 16 18 C 0.52 14.59 7.55 133.64 1.01 15.60 16 19 N -0.68 -12.41 5.68 -344.01 -1.95 -14.36 16 20 C 0.14 1.92 5.73 86.38 0.50 2.42 16 21 C -0.12 -1.30 5.70 30.59 0.17 -1.12 16 22 C 0.07 0.74 5.75 71.98 0.41 1.15 16 23 O -0.40 -5.94 9.99 -148.98 -1.49 -7.43 16 24 C 0.09 1.01 2.61 30.60 0.08 1.09 16 25 C -0.14 -1.52 5.54 30.59 0.17 -1.35 16 26 C -0.12 -0.94 5.92 30.60 0.18 -0.76 16 27 C -0.12 -0.89 5.92 30.60 0.18 -0.70 16 28 C -0.11 -0.83 5.92 30.60 0.18 -0.65 16 29 C -0.12 -1.19 5.57 30.60 0.17 -1.02 16 30 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.06 2.80 7.20 -2.38 -0.02 2.79 16 32 H 0.05 2.69 7.57 -2.39 -0.02 2.67 16 33 H 0.24 4.40 8.06 -2.91 -0.02 4.38 16 34 H 0.23 5.25 8.06 -2.91 -0.02 5.23 16 35 H 0.42 5.53 8.34 -92.71 -0.77 4.76 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.59 7.87 -2.39 -0.02 0.57 16 41 H 0.06 0.59 8.08 -2.39 -0.02 0.57 16 42 H 0.07 0.67 7.79 -2.38 -0.02 0.65 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.68 7.87 -2.39 -0.02 0.66 16 45 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 46 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 50 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -81.33 422.33 1.28 -80.05 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.09 Total: 16.00 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 8.40 Total: 18.81 kcal Atomic # 7 Polarization: -145.38 SS G_CDS: -7.61 Total: -152.99 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -1.49 Total: -7.43 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.56 kcal Total: -81.33 1.28 -80.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.367 kcal (2) G-P(sol) polarization free energy of solvation -81.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds