Wall clock time and date at job start Tue Mar 31 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47269 * 299.99806 * 5 4 2 7 7 C 1.53005 * 109.46542 * 59.99862 * 6 5 4 8 8 C 1.52997 * 109.47452 * 300.00026 * 7 6 5 9 9 H 1.09001 * 109.46832 * 300.00199 * 8 7 6 10 10 O 1.42895 * 109.47503 * 179.97438 * 8 7 6 11 11 C 1.42898 * 113.99757 * 89.99640 * 10 8 7 12 12 C 1.53006 * 109.47102 * 180.02562 * 11 10 8 13 13 N 1.46502 * 109.47088 * 65.00386 * 12 11 10 14 14 C 1.38104 * 119.99844 * 180.02562 * 13 12 11 15 15 N 1.32861 * 120.81749 * 359.71739 * 14 13 12 16 16 C 1.32124 * 121.19322 * 179.79788 * 15 14 13 17 17 N 1.31503 * 122.64518 * 0.48072 * 16 15 14 18 18 C 1.33195 * 120.68726 * 359.76860 * 17 16 15 19 19 C 1.40821 * 120.81066 * 179.97438 * 14 13 12 20 20 C 1.41164 * 134.69645 * 359.95552 * 19 14 13 21 21 N 1.30252 * 108.47148 * 180.02562 * 20 19 14 22 22 N 1.36314 * 134.62218 * 180.02562 * 18 17 16 23 23 C 1.46505 * 125.87073 * 0.02562 * 22 18 17 24 24 C 1.50703 * 109.47006 * 270.02697 * 23 22 18 25 25 H 1.08003 * 120.00058 * 359.97438 * 24 23 22 26 26 C 1.37872 * 119.99712 * 180.02562 * 24 23 22 27 27 N 1.31519 * 120.00499 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 119.99746 * 179.97438 * 26 24 23 29 29 H 1.48506 * 109.47357 * 90.00139 * 28 26 24 30 30 H 1.48509 * 109.47240 * 209.99387 * 28 26 24 31 31 H 1.48493 * 109.47230 * 329.99474 * 28 26 24 32 32 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 33 33 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 35 35 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 36 36 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 37 37 H 1.09001 * 109.47289 * 60.00300 * 5 4 2 38 38 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 39 39 H 1.09000 * 109.47192 * 179.97438 * 6 5 4 40 40 H 1.08998 * 109.46876 * 300.00443 * 6 5 4 41 41 H 1.09001 * 109.46812 * 60.00243 * 7 6 5 42 42 H 1.09002 * 109.46935 * 179.97438 * 7 6 5 43 43 H 1.08997 * 109.47676 * 300.00264 * 11 10 8 44 44 H 1.08996 * 109.47183 * 60.00500 * 11 10 8 45 45 H 1.09000 * 109.47182 * 185.00267 * 12 11 10 46 46 H 1.09002 * 109.46856 * 305.00248 * 12 11 10 47 47 H 0.97001 * 119.99515 * 359.97438 * 13 12 11 48 48 H 1.08000 * 118.67326 * 180.22674 * 16 15 14 49 49 H 1.08002 * 125.76731 * 359.97438 * 20 19 14 50 50 H 1.09000 * 109.47272 * 30.02187 * 23 22 18 51 51 H 1.08993 * 109.47183 * 150.02450 * 23 22 18 52 52 H 0.97000 * 120.00189 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5700 -0.7218 1.2488 6 6 4.0795 -1.4434 -0.0005 7 6 3.5694 -0.7221 -1.2497 8 6 2.0395 -0.7215 -1.2494 9 1 1.6758 -1.7491 -1.2492 10 8 1.5631 -0.0473 -2.4157 11 6 1.3688 -0.9035 -3.5432 12 6 0.8610 -0.0791 -4.7280 13 7 1.8949 0.8740 -5.1387 14 6 1.6625 1.7319 -6.1957 15 7 0.5094 1.7030 -6.8550 16 6 0.2777 2.5230 -7.8647 17 7 1.1627 3.4013 -8.2828 18 6 2.3508 3.5042 -7.6896 19 6 2.6441 2.6552 -6.6046 20 6 3.9496 2.9733 -6.1718 21 7 4.4120 3.9307 -6.9243 22 7 3.4504 4.2876 -7.8780 23 6 3.5999 5.3256 -8.9010 24 6 4.1824 4.7184 -10.1513 25 1 4.4181 3.6648 -10.1807 26 6 4.4154 5.5082 -11.2571 27 7 4.1289 6.7913 -11.2211 28 14 5.1382 4.7557 -12.8066 29 1 4.0393 4.2813 -13.6856 30 1 5.9406 5.7779 -13.5255 31 1 6.0092 3.6101 -12.4407 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 -0.8900 35 1 1.6767 -0.2074 2.1392 36 1 1.6768 -1.7489 1.2491 37 1 3.9338 0.3057 1.2487 38 1 3.9334 -1.2361 2.1386 39 1 5.1695 -1.4434 -0.0009 40 1 3.7158 -2.4709 -0.0002 41 1 3.9332 0.3054 -1.2498 42 1 3.9328 -1.2359 -2.1397 43 1 2.3149 -1.3754 -3.8084 44 1 0.6368 -1.6717 -3.2943 45 1 0.6284 -0.7438 -5.5600 46 1 -0.0376 0.4636 -4.4344 47 1 2.7424 0.9029 -4.6678 48 1 -0.6754 2.4669 -8.3696 49 1 4.4758 2.5029 -5.3544 50 1 2.6244 5.7563 -9.1268 51 1 4.2652 6.1061 -8.5321 52 1 4.2932 7.3469 -11.9990 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:15 Heat of formation + Delta-G solvation = 24.173797 kcal Electronic energy + Delta-G solvation = -31629.117098 eV Core-core repulsion = 27435.385183 eV Total energy + Delta-G solvation = -4193.731915 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.79967 -40.44135 -39.83492 -38.13300 -36.83647 -35.71436 -33.92172 -33.44158 -32.93296 -31.84374 -30.66656 -29.41396 -28.88648 -26.99798 -25.58942 -25.10188 -24.24450 -23.41902 -22.80507 -22.14228 -21.57512 -20.73109 -19.35505 -18.81296 -18.67825 -17.86287 -17.70725 -16.90640 -16.68276 -16.40462 -16.27164 -15.73014 -15.45100 -15.30083 -15.16162 -15.10346 -14.98806 -14.77026 -14.52722 -14.22948 -14.00893 -13.72769 -13.68304 -13.62467 -13.13793 -13.03778 -12.78532 -12.75184 -12.52454 -12.41141 -12.38674 -12.29993 -12.27696 -11.89512 -11.78403 -11.72293 -11.51372 -11.43715 -11.22895 -11.10487 -10.75952 -10.60075 -10.25954 -10.05087 -9.76057 -8.95703 -8.35323 -6.52461 -0.01913 0.54436 1.32620 1.36215 1.39887 1.49880 1.63645 2.05905 2.31764 2.68699 2.94073 3.03146 3.28934 3.40997 3.67265 3.73042 3.79456 3.82803 3.98209 4.07916 4.11162 4.21574 4.31376 4.31827 4.35616 4.43820 4.53250 4.56993 4.58340 4.59478 4.75389 4.80246 4.83194 4.86453 4.94314 4.96597 5.02962 5.09539 5.17757 5.19852 5.21128 5.31399 5.35094 5.41674 5.45679 5.47602 5.54828 5.57089 5.76350 5.78150 5.98611 6.13903 6.37547 6.53008 6.59008 6.79771 7.16876 7.47031 8.72323 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.001867 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.404062 B =14991.352249 C =15693.420785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.060 0.940 4 C -0.109 4.109 5 C -0.124 4.124 6 C -0.115 4.115 7 C -0.142 4.142 8 C 0.097 3.903 9 H 0.070 0.930 10 O -0.394 6.394 11 C 0.052 3.948 12 C 0.134 3.866 13 N -0.678 5.678 14 C 0.517 3.483 15 N -0.616 5.616 16 C 0.376 3.624 17 N -0.606 5.606 18 C 0.336 3.664 19 C -0.347 4.347 20 C 0.100 3.900 21 N -0.291 5.291 22 N -0.366 5.366 23 C 0.285 3.715 24 C -0.551 4.551 25 H 0.046 0.954 26 C 0.018 3.982 27 N -0.920 5.920 28 Si 0.977 3.023 29 H -0.269 1.269 30 H -0.268 1.268 31 H -0.272 1.272 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.068 0.932 47 H 0.421 0.579 48 H 0.231 0.769 49 H 0.236 0.764 50 H 0.032 0.968 51 H 0.031 0.969 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 -22.500 26.322 35.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.079 0.921 4 C -0.146 4.146 5 C -0.161 4.161 6 C -0.153 4.153 7 C -0.180 4.180 8 C 0.040 3.960 9 H 0.088 0.912 10 O -0.314 6.314 11 C -0.024 4.024 12 C 0.011 3.989 13 N -0.310 5.310 14 C 0.262 3.738 15 N -0.347 5.347 16 C 0.084 3.916 17 N -0.334 5.334 18 C 0.090 3.910 19 C -0.365 4.365 20 C -0.095 4.095 21 N -0.106 5.106 22 N -0.153 5.153 23 C 0.166 3.834 24 C -0.589 4.589 25 H 0.064 0.936 26 C -0.183 4.183 27 N -0.558 5.558 28 Si 0.800 3.200 29 H -0.194 1.194 30 H -0.193 1.193 31 H -0.197 1.197 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.086 0.914 47 H 0.260 0.740 48 H 0.247 0.753 49 H 0.252 0.748 50 H 0.050 0.950 51 H 0.049 0.951 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.187 -21.311 25.435 33.755 hybrid contribution 0.827 -0.165 -0.446 0.954 sum -5.361 -21.476 24.989 33.383 Atomic orbital electron populations 1.21738 0.94673 1.01951 1.01604 1.21192 0.96160 0.99664 0.93681 0.92098 1.21562 0.95528 1.00923 0.96617 1.21586 0.95543 1.00753 0.98227 1.21487 1.00708 0.99433 0.93662 1.22048 0.95616 1.01392 0.98932 1.22183 0.93145 0.95924 0.84766 0.91164 1.87962 1.86735 1.36134 1.20546 1.22861 1.01512 0.92812 0.85242 1.21508 0.90573 0.91098 0.95742 1.44383 1.19945 1.36162 1.30501 1.18031 0.86613 0.83797 0.85367 1.68092 1.20654 1.31252 1.14702 1.25182 0.96877 0.82395 0.87177 1.67524 1.02108 1.28739 1.34988 1.19361 0.89144 0.90750 0.91789 1.19746 1.00406 1.09074 1.07243 1.24206 0.91964 0.94268 0.99033 1.76882 1.14142 1.17536 1.02023 1.49086 1.08347 1.30794 1.27052 1.19120 0.97251 0.83874 0.83188 1.21375 1.44151 0.95306 0.98078 0.93613 1.25825 0.95227 0.95177 1.02057 1.70019 1.47753 1.05984 1.32021 0.85284 0.78522 0.78237 0.77968 1.19386 1.19291 1.19659 0.92553 0.92182 0.93225 0.91199 0.91094 0.92549 0.91007 0.91458 0.91227 0.92200 0.91344 0.91409 0.89597 0.89155 0.91415 0.74030 0.75295 0.74835 0.94993 0.95149 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.05 71.98 0.65 -1.00 16 2 C -0.09 -1.02 2.46 -10.79 -0.03 -1.04 16 3 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -0.92 5.20 30.59 0.16 -0.76 16 5 C -0.12 -1.04 5.92 30.60 0.18 -0.86 16 6 C -0.12 -0.95 5.92 30.60 0.18 -0.77 16 7 C -0.14 -1.47 5.54 30.60 0.17 -1.30 16 8 C 0.10 1.06 2.04 30.60 0.06 1.12 16 9 H 0.07 0.61 7.79 -2.39 -0.02 0.59 16 10 O -0.39 -5.53 9.26 -148.98 -1.38 -6.91 16 11 C 0.05 0.53 5.88 71.98 0.42 0.96 16 12 C 0.13 2.04 6.12 86.38 0.53 2.56 16 13 N -0.68 -13.71 5.63 -343.98 -1.94 -15.65 16 14 C 0.52 15.50 7.55 133.65 1.01 16.51 16 15 N -0.62 -18.97 9.69 -197.01 -1.91 -20.88 16 16 C 0.38 12.68 12.24 180.87 2.21 14.89 16 17 N -0.61 -26.84 10.47 -198.11 -2.07 -28.92 16 18 C 0.34 15.69 8.04 134.15 1.08 16.77 16 19 C -0.35 -12.79 6.14 -21.29 -0.13 -12.92 16 20 C 0.10 3.41 11.87 85.65 1.02 4.42 16 21 N -0.29 -13.10 12.45 -56.46 -0.70 -13.80 16 22 N -0.37 -18.88 3.63 -348.94 -1.27 -20.14 16 23 C 0.28 16.56 6.19 85.63 0.53 17.09 16 24 C -0.55 -33.39 9.39 25.60 0.24 -33.15 16 25 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 26 C 0.02 1.04 5.46 84.65 0.46 1.50 16 27 N -0.92 -55.35 13.29 21.45 0.28 -55.07 16 28 Si 0.98 45.58 29.54 68.60 2.03 47.61 16 29 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 30 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 31 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.05 0.73 7.68 -2.38 -0.02 0.71 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.64 7.87 -2.39 -0.02 0.62 16 43 H 0.07 0.55 7.87 -2.39 -0.02 0.53 16 44 H 0.09 0.58 8.08 -2.39 -0.02 0.56 16 45 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.42 6.98 8.34 -92.71 -0.77 6.21 16 48 H 0.23 5.60 8.06 -2.91 -0.02 5.58 16 49 H 0.24 4.95 8.06 -2.91 -0.02 4.93 16 50 H 0.03 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 52 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -76.85 424.15 1.94 -74.91 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.14 Total: 14.82 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 8.75 Total: 24.02 kcal Atomic # 7 Polarization: -146.85 SS G_CDS: -7.60 Total: -154.45 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -1.38 Total: -6.91 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -76.85 1.94 -74.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.087 kcal (2) G-P(sol) polarization free energy of solvation -76.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds