Wall clock time and date at job start Tue Mar 31 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47359 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99547 * 2 1 3 5 5 C 1.53000 * 109.47264 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46857 * 60.00316 * 5 4 2 7 7 C 1.52997 * 109.46925 * 299.99891 * 6 5 4 8 8 C 1.53000 * 109.47264 * 60.00358 * 7 6 5 9 9 H 1.09000 * 109.46957 * 59.99894 * 8 7 6 10 10 O 1.42898 * 109.47100 * 179.97438 * 8 7 6 11 11 C 1.42897 * 114.00073 * 269.99659 * 10 8 7 12 12 C 1.53003 * 109.47623 * 180.02562 * 11 10 8 13 13 N 1.46493 * 109.46715 * 64.99849 * 12 11 10 14 14 C 1.38115 * 120.00063 * 180.02562 * 13 12 11 15 15 N 1.32861 * 120.80878 * 359.72508 * 14 13 12 16 16 C 1.32125 * 121.19388 * 179.97438 * 15 14 13 17 17 N 1.31500 * 122.64309 * 0.02562 * 16 15 14 18 18 C 1.33201 * 120.68769 * 359.97438 * 17 16 15 19 19 C 1.40811 * 120.81517 * 179.44845 * 14 13 12 20 20 C 1.41172 * 134.69814 * 0.67639 * 19 14 13 21 21 N 1.30248 * 108.47078 * 179.54718 * 20 19 14 22 22 N 1.36312 * 134.61978 * 180.02562 * 18 17 16 23 23 C 1.46499 * 125.87334 * 359.97438 * 22 18 17 24 24 C 1.50705 * 109.47010 * 89.99882 * 23 22 18 25 25 H 1.07997 * 119.99958 * 0.02562 * 24 23 22 26 26 C 1.37874 * 119.99888 * 180.02562 * 24 23 22 27 27 N 1.31523 * 120.00159 * 180.02562 * 26 24 23 28 28 Si 1.86801 * 120.00271 * 0.02562 * 26 24 23 29 29 H 1.48499 * 109.47088 * 89.99924 * 28 26 24 30 30 H 1.48497 * 109.47203 * 210.00260 * 28 26 24 31 31 H 1.48499 * 109.46837 * 330.00007 * 28 26 24 32 32 H 1.08994 * 109.47136 * 300.00600 * 1 2 3 33 33 H 1.09006 * 109.46671 * 60.00528 * 1 2 3 34 34 H 1.09001 * 109.47359 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.47302 * 300.00488 * 4 2 1 36 36 H 1.09006 * 109.47337 * 60.00333 * 4 2 1 37 37 H 1.09004 * 109.47218 * 179.97438 * 5 4 2 38 38 H 1.09000 * 109.46957 * 300.00106 * 5 4 2 39 39 H 1.09000 * 109.47509 * 60.00128 * 6 5 4 40 40 H 1.08998 * 109.47099 * 180.02562 * 6 5 4 41 41 H 1.09001 * 109.47302 * 299.99870 * 7 6 5 42 42 H 1.08999 * 109.46885 * 180.02562 * 7 6 5 43 43 H 1.09004 * 109.47106 * 59.99880 * 11 10 8 44 44 H 1.09001 * 109.47453 * 300.00471 * 11 10 8 45 45 H 1.09001 * 109.46782 * 305.00692 * 12 11 10 46 46 H 1.08993 * 109.47555 * 185.00249 * 12 11 10 47 47 H 0.97005 * 120.00233 * 359.72854 * 13 12 11 48 48 H 1.07991 * 118.67818 * 179.97438 * 16 15 14 49 49 H 1.07999 * 125.76369 * 359.32698 * 20 19 14 50 50 H 1.08996 * 109.47604 * 209.99666 * 23 22 18 51 51 H 1.09001 * 109.47365 * 330.00678 * 23 22 18 52 52 H 0.96998 * 119.99922 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7208 -1.2495 6 6 4.0805 -1.4416 -0.0002 7 6 3.5705 -0.7203 1.2490 8 6 2.0405 -0.7209 1.2493 9 1 1.6775 -1.7487 1.2496 10 8 1.5641 -0.0477 2.4163 11 6 1.3709 -0.9045 3.5434 12 6 0.8618 -0.0815 4.7285 13 7 -0.4656 0.4540 4.4167 14 6 -1.1301 1.2348 5.3422 15 7 -0.5829 1.5056 6.5222 16 6 -1.2115 2.2520 7.4129 17 7 -2.4014 2.7671 7.1936 18 6 -3.0330 2.5528 6.0406 19 6 -2.4016 1.7679 5.0560 20 6 -3.2816 1.7003 3.9541 21 7 -4.3503 2.3891 4.2367 22 7 -4.2346 2.9338 5.5219 23 6 -5.2336 3.7689 6.1934 24 6 -4.9711 5.2187 5.8766 25 1 -4.1433 5.4907 5.2385 26 6 -5.7878 6.1978 6.4013 27 7 -5.5591 7.4631 6.1244 28 14 -7.2192 5.7274 7.5055 29 1 -6.7649 5.6973 8.9190 30 1 -8.3082 6.7259 7.3567 31 1 -7.7223 4.3849 7.1186 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3634 -1.0277 0.0005 35 1 1.6766 -1.7490 -1.2491 36 1 1.6768 -0.2075 -2.1393 37 1 3.9334 -1.2351 -2.1392 38 1 3.9330 0.3070 -1.2498 39 1 3.7176 -2.4694 0.0001 40 1 5.1705 -1.4409 -0.0001 41 1 3.9335 0.3075 1.2487 42 1 3.9345 -1.2336 2.1390 43 1 2.3174 -1.3761 3.8079 44 1 0.6393 -1.6732 3.2943 45 1 1.5497 0.7418 4.9213 46 1 0.7990 -0.7169 5.6119 47 1 -0.8760 0.2639 3.5586 48 1 -0.7292 2.4462 8.3594 49 1 -3.0979 1.1702 3.0313 50 1 -6.2294 3.4954 5.8449 51 1 -5.1707 3.6154 7.2707 52 1 -6.1335 8.1519 6.4939 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200185.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:22 Heat of formation + Delta-G solvation = 48.694940 kcal Electronic energy + Delta-G solvation = -31775.315922 eV Core-core repulsion = 27582.647324 eV Total energy + Delta-G solvation = -4192.668598 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.39002 -39.90674 -38.52072 -37.37754 -35.90223 -33.73316 -32.99416 -32.42058 -31.46145 -30.84352 -29.90844 -28.30338 -27.63345 -26.49595 -23.92679 -23.69382 -22.87460 -22.51755 -21.91492 -21.66532 -20.23991 -20.05862 -17.89978 -17.54010 -17.18537 -17.07679 -16.43871 -15.89505 -15.69833 -15.23366 -15.04674 -14.77794 -14.71727 -14.34680 -14.10244 -14.04091 -13.79306 -13.62002 -13.53864 -13.37817 -13.13043 -12.64841 -12.61130 -12.42500 -12.29085 -12.04527 -11.91154 -11.79353 -11.44970 -11.28347 -11.25572 -11.04033 -10.96570 -10.93429 -10.72307 -10.67415 -10.62115 -10.24182 -10.09739 -9.74925 -9.66259 -9.25623 -8.70949 -8.67918 -8.21289 -7.61365 -6.19245 -4.21572 1.31336 1.94478 2.87794 3.01980 3.11065 3.23346 3.25513 3.28997 3.30824 4.20948 4.27876 4.28750 4.39530 4.44882 4.52397 4.62400 4.70935 4.71892 4.78985 4.83359 4.84617 4.97258 4.99481 5.02217 5.05548 5.07344 5.11994 5.19967 5.27643 5.34919 5.46098 5.50287 5.54820 5.56150 5.64877 5.66415 5.69932 5.73776 5.75674 5.83035 5.86162 5.99328 6.06916 6.29089 6.53069 6.57180 6.87909 6.90828 6.96452 7.25138 7.34196 7.47338 7.86646 8.16698 8.34400 8.79754 8.84103 9.35578 10.93504 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.001961 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.360839 B =14277.996892 C =15224.455247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.113 4.113 5 C -0.123 4.123 6 C -0.117 4.117 7 C -0.142 4.142 8 C 0.097 3.903 9 H 0.059 0.941 10 O -0.374 6.374 11 C 0.048 3.952 12 C 0.135 3.865 13 N -0.700 5.700 14 C 0.511 3.489 15 N -0.619 5.619 16 C 0.370 3.630 17 N -0.558 5.558 18 C 0.367 3.633 19 C -0.336 4.336 20 C 0.074 3.926 21 N -0.242 5.242 22 N -0.333 5.333 23 C 0.237 3.763 24 C -0.537 4.537 25 H 0.078 0.922 26 C 0.079 3.921 27 N -0.888 5.888 28 Si 0.875 3.125 29 H -0.270 1.270 30 H -0.280 1.280 31 H -0.264 1.264 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.411 0.589 48 H 0.195 0.805 49 H 0.183 0.817 50 H 0.051 0.949 51 H 0.051 0.949 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.979 -22.723 -11.128 31.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.097 0.903 4 C -0.150 4.150 5 C -0.161 4.161 6 C -0.155 4.155 7 C -0.180 4.180 8 C 0.039 3.961 9 H 0.077 0.923 10 O -0.293 6.293 11 C -0.029 4.029 12 C 0.011 3.989 13 N -0.333 5.333 14 C 0.258 3.742 15 N -0.350 5.350 16 C 0.076 3.924 17 N -0.283 5.283 18 C 0.119 3.881 19 C -0.354 4.354 20 C -0.121 4.121 21 N -0.058 5.058 22 N -0.119 5.119 23 C 0.118 3.882 24 C -0.575 4.575 25 H 0.096 0.904 26 C -0.125 4.125 27 N -0.525 5.525 28 Si 0.701 3.299 29 H -0.195 1.195 30 H -0.206 1.206 31 H -0.189 1.189 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.248 0.752 48 H 0.212 0.788 49 H 0.200 0.800 50 H 0.069 0.931 51 H 0.069 0.931 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.034 -21.644 -10.542 30.080 hybrid contribution -0.367 -0.662 -0.225 0.789 sum 17.668 -22.306 -10.767 30.424 Atomic orbital electron populations 1.21786 0.94472 1.01622 1.02521 1.21198 0.96358 1.00367 0.92746 0.90336 1.21593 0.95402 1.00700 0.97352 1.21583 0.95719 1.01048 0.97725 1.21493 1.00459 0.99231 0.94275 1.22049 0.95966 1.01900 0.98095 1.22128 0.92937 0.95604 0.85446 0.92330 1.87996 1.86448 1.35066 1.19803 1.22846 1.00026 0.93133 0.86931 1.21323 0.83820 0.98271 0.95444 1.44225 1.18531 1.53402 1.17177 1.17903 0.84973 0.84094 0.87207 1.67947 1.38145 1.25803 1.03091 1.24404 0.85796 0.85724 0.96474 1.67501 1.11420 1.28448 1.20970 1.18896 0.87940 0.91251 0.90011 1.19573 0.99710 1.15594 1.00491 1.23376 0.91106 0.99403 0.98245 1.76937 1.22142 1.11089 0.95590 1.48927 1.13242 1.39868 1.09840 1.20075 0.85887 0.90110 0.92085 1.21110 1.16215 0.87555 1.32609 0.90404 1.24778 0.97274 0.94651 0.95798 1.69878 1.38844 0.99608 1.44180 0.86868 0.82422 0.78985 0.81633 1.19513 1.20561 1.18884 0.91628 0.92549 0.93060 0.91909 0.91342 0.91880 0.91727 0.92038 0.91731 0.90974 0.91867 0.91748 0.92712 0.90510 0.89987 0.75213 0.78816 0.79993 0.93091 0.93105 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.05 37.16 0.34 -0.72 16 2 C -0.09 -0.61 2.46 -90.62 -0.22 -0.84 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -0.63 5.20 -26.73 -0.14 -0.77 16 5 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 6 C -0.12 -0.60 5.92 -26.73 -0.16 -0.76 16 7 C -0.14 -0.89 5.54 -26.73 -0.15 -1.04 16 8 C 0.10 0.66 2.04 -26.73 -0.05 0.61 16 9 H 0.06 0.36 7.78 -51.93 -0.40 -0.04 16 10 O -0.37 -3.18 9.26 -35.23 -0.33 -3.51 16 11 C 0.05 0.32 5.88 37.16 0.22 0.54 16 12 C 0.14 1.22 6.12 -4.04 -0.02 1.20 16 13 N -0.70 -7.91 5.63 -60.09 -0.34 -8.25 16 14 C 0.51 7.98 7.55 -154.84 -1.17 6.81 16 15 N -0.62 -9.90 9.69 -13.62 -0.13 -10.03 16 16 C 0.37 6.24 12.24 -92.12 -1.13 5.11 16 17 N -0.56 -11.78 10.47 -13.97 -0.15 -11.93 16 18 C 0.37 8.12 8.04 -156.23 -1.26 6.86 16 19 C -0.34 -6.16 6.14 -106.82 -0.66 -6.82 16 20 C 0.07 1.27 11.87 -17.11 -0.20 1.06 16 21 N -0.24 -5.18 12.45 30.80 0.38 -4.80 16 22 N -0.33 -7.93 3.63 -61.64 -0.22 -8.15 16 23 C 0.24 6.04 5.26 -5.19 -0.03 6.01 16 24 C -0.54 -15.79 9.94 -34.44 -0.34 -16.14 16 25 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 26 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 27 N -0.89 -27.31 13.96 55.43 0.77 -26.53 16 28 Si 0.87 21.09 27.47 -169.99 -4.67 16.43 16 29 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 30 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 31 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 32 H 0.06 0.54 7.68 -51.93 -0.40 0.14 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 43 H 0.06 0.35 7.87 -51.93 -0.41 -0.06 16 44 H 0.05 0.32 8.08 -51.93 -0.42 -0.10 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.41 3.98 8.34 -40.82 -0.34 3.64 16 48 H 0.20 2.46 8.06 -52.49 -0.42 2.04 16 49 H 0.18 2.15 8.06 -52.49 -0.42 1.73 16 50 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 51 H 0.05 1.27 7.57 -51.93 -0.39 0.88 16 52 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 420.55 15.07 6.34 6.34 Total: -1.00 -34.79 420.55 -12.23 -47.02 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.66 Total: 0.89 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -5.23 Total: 2.52 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: 0.32 Total: -69.68 kcal Atomic # 8 Polarization: -3.18 SS G_CDS: -0.33 Total: -3.51 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -34.79 -12.23 -47.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200185.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.715 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds