Wall clock time and date at job start Tue Mar 31 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47359 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99547 * 2 1 3 5 5 C 1.53000 * 109.47264 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46857 * 60.00316 * 5 4 2 7 7 C 1.52997 * 109.46925 * 299.99891 * 6 5 4 8 8 C 1.53000 * 109.47264 * 60.00358 * 7 6 5 9 9 H 1.09000 * 109.46957 * 59.99894 * 8 7 6 10 10 O 1.42898 * 109.47100 * 179.97438 * 8 7 6 11 11 C 1.42897 * 114.00073 * 269.99659 * 10 8 7 12 12 C 1.53003 * 109.47623 * 180.02562 * 11 10 8 13 13 N 1.46493 * 109.46715 * 64.99849 * 12 11 10 14 14 C 1.38115 * 120.00063 * 180.02562 * 13 12 11 15 15 N 1.32861 * 120.80878 * 359.72508 * 14 13 12 16 16 C 1.32125 * 121.19388 * 179.97438 * 15 14 13 17 17 N 1.31500 * 122.64309 * 0.02562 * 16 15 14 18 18 C 1.33201 * 120.68769 * 359.97438 * 17 16 15 19 19 C 1.40811 * 120.81517 * 179.44845 * 14 13 12 20 20 C 1.41172 * 134.69814 * 0.67639 * 19 14 13 21 21 N 1.30248 * 108.47078 * 179.54718 * 20 19 14 22 22 N 1.36312 * 134.61978 * 180.02562 * 18 17 16 23 23 C 1.46499 * 125.87334 * 359.97438 * 22 18 17 24 24 C 1.50705 * 109.47010 * 89.99882 * 23 22 18 25 25 H 1.07997 * 119.99958 * 0.02562 * 24 23 22 26 26 C 1.37874 * 119.99888 * 180.02562 * 24 23 22 27 27 N 1.31523 * 120.00159 * 180.02562 * 26 24 23 28 28 Si 1.86801 * 120.00271 * 0.02562 * 26 24 23 29 29 H 1.48499 * 109.47088 * 89.99924 * 28 26 24 30 30 H 1.48497 * 109.47203 * 210.00260 * 28 26 24 31 31 H 1.48499 * 109.46837 * 330.00007 * 28 26 24 32 32 H 1.08994 * 109.47136 * 300.00600 * 1 2 3 33 33 H 1.09006 * 109.46671 * 60.00528 * 1 2 3 34 34 H 1.09001 * 109.47359 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.47302 * 300.00488 * 4 2 1 36 36 H 1.09006 * 109.47337 * 60.00333 * 4 2 1 37 37 H 1.09004 * 109.47218 * 179.97438 * 5 4 2 38 38 H 1.09000 * 109.46957 * 300.00106 * 5 4 2 39 39 H 1.09000 * 109.47509 * 60.00128 * 6 5 4 40 40 H 1.08998 * 109.47099 * 180.02562 * 6 5 4 41 41 H 1.09001 * 109.47302 * 299.99870 * 7 6 5 42 42 H 1.08999 * 109.46885 * 180.02562 * 7 6 5 43 43 H 1.09004 * 109.47106 * 59.99880 * 11 10 8 44 44 H 1.09001 * 109.47453 * 300.00471 * 11 10 8 45 45 H 1.09001 * 109.46782 * 305.00692 * 12 11 10 46 46 H 1.08993 * 109.47555 * 185.00249 * 12 11 10 47 47 H 0.97005 * 120.00233 * 359.72854 * 13 12 11 48 48 H 1.07991 * 118.67818 * 179.97438 * 16 15 14 49 49 H 1.07999 * 125.76369 * 359.32698 * 20 19 14 50 50 H 1.08996 * 109.47604 * 209.99666 * 23 22 18 51 51 H 1.09001 * 109.47365 * 330.00678 * 23 22 18 52 52 H 0.96998 * 119.99922 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7208 -1.2495 6 6 4.0805 -1.4416 -0.0002 7 6 3.5705 -0.7203 1.2490 8 6 2.0405 -0.7209 1.2493 9 1 1.6775 -1.7487 1.2496 10 8 1.5641 -0.0477 2.4163 11 6 1.3709 -0.9045 3.5434 12 6 0.8618 -0.0815 4.7285 13 7 -0.4656 0.4540 4.4167 14 6 -1.1301 1.2348 5.3422 15 7 -0.5829 1.5056 6.5222 16 6 -1.2115 2.2520 7.4129 17 7 -2.4014 2.7671 7.1936 18 6 -3.0330 2.5528 6.0406 19 6 -2.4016 1.7679 5.0560 20 6 -3.2816 1.7003 3.9541 21 7 -4.3503 2.3891 4.2367 22 7 -4.2346 2.9338 5.5219 23 6 -5.2336 3.7689 6.1934 24 6 -4.9711 5.2187 5.8766 25 1 -4.1433 5.4907 5.2385 26 6 -5.7878 6.1978 6.4013 27 7 -5.5591 7.4631 6.1244 28 14 -7.2192 5.7274 7.5055 29 1 -6.7649 5.6973 8.9190 30 1 -8.3082 6.7259 7.3567 31 1 -7.7223 4.3849 7.1186 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3634 -1.0277 0.0005 35 1 1.6766 -1.7490 -1.2491 36 1 1.6768 -0.2075 -2.1393 37 1 3.9334 -1.2351 -2.1392 38 1 3.9330 0.3070 -1.2498 39 1 3.7176 -2.4694 0.0001 40 1 5.1705 -1.4409 -0.0001 41 1 3.9335 0.3075 1.2487 42 1 3.9345 -1.2336 2.1390 43 1 2.3174 -1.3761 3.8079 44 1 0.6393 -1.6732 3.2943 45 1 1.5497 0.7418 4.9213 46 1 0.7990 -0.7169 5.6119 47 1 -0.8760 0.2639 3.5586 48 1 -0.7292 2.4462 8.3594 49 1 -3.0979 1.1702 3.0313 50 1 -6.2294 3.4954 5.8449 51 1 -5.1707 3.6154 7.2707 52 1 -6.1335 8.1519 6.4939 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200185.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:21 Heat of formation + Delta-G solvation = 27.524326 kcal Electronic energy + Delta-G solvation = -31776.233949 eV Core-core repulsion = 27582.647324 eV Total energy + Delta-G solvation = -4193.586625 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.82824 -40.44924 -39.86204 -38.14171 -36.85179 -35.66674 -34.01840 -33.46634 -33.09529 -31.86275 -30.67150 -29.74431 -29.05799 -27.00698 -25.40415 -25.02686 -24.15263 -23.38368 -22.86976 -22.15334 -21.55095 -20.72803 -19.33822 -19.28113 -18.73244 -17.84362 -17.72960 -16.89601 -16.71627 -16.42769 -16.14489 -15.84030 -15.43878 -15.26703 -15.23519 -15.15049 -14.99300 -14.87726 -14.50607 -14.21365 -14.12107 -13.94675 -13.83435 -13.65179 -13.13692 -13.10004 -12.77217 -12.66469 -12.50426 -12.46943 -12.37309 -12.25747 -12.02227 -11.92192 -11.85448 -11.73960 -11.53556 -11.43888 -11.21578 -11.10994 -10.91930 -10.61575 -10.27573 -10.08271 -9.75590 -8.96010 -8.43298 -6.53647 -0.04698 0.51775 1.27268 1.33858 1.38705 1.46385 1.61226 2.04699 2.24640 2.68470 2.88183 3.00768 3.26708 3.37375 3.65382 3.72075 3.77571 3.81539 3.97111 4.06195 4.08247 4.22398 4.27368 4.32855 4.36109 4.41895 4.50389 4.51711 4.55218 4.58000 4.60863 4.71598 4.74653 4.81225 4.92519 4.95853 5.03772 5.09143 5.14256 5.19014 5.19867 5.20770 5.30713 5.34492 5.40990 5.46179 5.49736 5.56658 5.68735 5.87065 6.06893 6.20407 6.37699 6.45328 6.55215 6.75811 7.08883 7.44337 8.73829 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.001961 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.360839 B =14277.996892 C =15224.455247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.057 0.943 4 C -0.109 4.109 5 C -0.124 4.124 6 C -0.114 4.114 7 C -0.141 4.141 8 C 0.097 3.903 9 H 0.073 0.927 10 O -0.396 6.396 11 C 0.052 3.948 12 C 0.133 3.867 13 N -0.677 5.677 14 C 0.516 3.484 15 N -0.616 5.616 16 C 0.377 3.623 17 N -0.605 5.605 18 C 0.339 3.661 19 C -0.347 4.347 20 C 0.102 3.898 21 N -0.287 5.287 22 N -0.366 5.366 23 C 0.251 3.749 24 C -0.548 4.548 25 H 0.018 0.982 26 C 0.019 3.981 27 N -0.937 5.937 28 Si 0.955 3.045 29 H -0.258 1.258 30 H -0.270 1.270 31 H -0.243 1.243 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.421 0.579 48 H 0.232 0.768 49 H 0.236 0.764 50 H 0.057 0.943 51 H 0.054 0.946 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.787 -26.228 -11.197 34.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.076 0.924 4 C -0.147 4.147 5 C -0.161 4.161 6 C -0.152 4.152 7 C -0.179 4.179 8 C 0.040 3.960 9 H 0.091 0.909 10 O -0.316 6.316 11 C -0.025 4.025 12 C 0.010 3.990 13 N -0.309 5.309 14 C 0.262 3.738 15 N -0.347 5.347 16 C 0.085 3.915 17 N -0.333 5.333 18 C 0.092 3.908 19 C -0.365 4.365 20 C -0.093 4.093 21 N -0.102 5.102 22 N -0.152 5.152 23 C 0.131 3.869 24 C -0.586 4.586 25 H 0.037 0.963 26 C -0.181 4.181 27 N -0.576 5.576 28 Si 0.775 3.225 29 H -0.183 1.183 30 H -0.195 1.195 31 H -0.166 1.166 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.260 0.740 48 H 0.248 0.752 49 H 0.252 0.748 50 H 0.075 0.925 51 H 0.071 0.929 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.907 -25.211 -10.668 33.269 hybrid contribution -0.307 0.363 -0.317 0.571 sum 18.600 -24.848 -10.984 32.924 Atomic orbital electron populations 1.21771 0.94591 1.02134 1.01784 1.21195 0.96266 0.99530 0.93777 0.92412 1.21568 0.95610 1.00964 0.96559 1.21589 0.95479 1.00706 0.98352 1.21483 1.00744 0.99464 0.93475 1.22032 0.95669 1.01146 0.99021 1.22183 0.93167 0.95982 0.84659 0.90910 1.87971 1.86739 1.36266 1.20634 1.22875 1.01399 0.92597 0.85594 1.21514 0.81961 0.98229 0.97271 1.44395 1.18916 1.51141 1.16489 1.18040 0.84286 0.83828 0.87679 1.68095 1.37587 1.25835 1.03167 1.25197 0.84563 0.84103 0.97663 1.67519 1.13297 1.30903 1.21569 1.19350 0.87929 0.92067 0.91445 1.19747 1.00793 1.15840 1.00089 1.24213 0.89057 0.96872 0.99110 1.76879 1.24596 1.13514 0.95217 1.48722 1.13966 1.41416 1.11133 1.19654 0.86930 0.87895 0.92439 1.21204 1.14794 0.90563 1.32055 0.96314 1.25863 1.00649 0.94207 0.97335 1.70036 1.40627 1.01135 1.45777 0.85624 0.77908 0.79744 0.79185 1.18295 1.19526 1.16642 0.92838 0.92824 0.91857 0.90948 0.91414 0.90918 0.92693 0.91047 0.91298 0.92675 0.91204 0.89748 0.90970 0.91831 0.88767 0.74014 0.75216 0.74790 0.92524 0.92854 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.05 71.98 0.65 -1.21 16 2 C -0.09 -1.12 2.46 -10.79 -0.03 -1.15 16 3 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.11 -1.04 5.20 30.59 0.16 -0.88 16 5 C -0.12 -1.10 5.92 30.59 0.18 -0.92 16 6 C -0.11 -0.92 5.92 30.59 0.18 -0.74 16 7 C -0.14 -1.50 5.54 30.59 0.17 -1.33 16 8 C 0.10 1.11 2.04 30.59 0.06 1.17 16 9 H 0.07 0.64 7.78 -2.39 -0.02 0.62 16 10 O -0.40 -5.82 9.26 -148.98 -1.38 -7.20 16 11 C 0.05 0.52 5.88 71.98 0.42 0.95 16 12 C 0.13 2.01 6.12 86.38 0.53 2.54 16 13 N -0.68 -13.47 5.63 -344.02 -1.94 -15.41 16 14 C 0.52 15.24 7.55 133.64 1.01 16.25 16 15 N -0.62 -18.70 9.69 -197.02 -1.91 -20.61 16 16 C 0.38 12.43 12.24 180.87 2.21 14.64 16 17 N -0.61 -25.97 10.47 -198.11 -2.07 -28.04 16 18 C 0.34 15.32 8.04 134.14 1.08 16.40 16 19 C -0.35 -12.51 6.14 -21.29 -0.13 -12.64 16 20 C 0.10 3.39 11.87 85.65 1.02 4.41 16 21 N -0.29 -12.49 12.45 -56.46 -0.70 -13.19 16 22 N -0.37 -18.02 3.63 -348.93 -1.27 -19.29 16 23 C 0.25 13.18 5.26 85.63 0.45 13.63 16 24 C -0.55 -33.98 9.94 25.60 0.25 -33.73 16 25 H 0.02 1.33 8.06 -2.91 -0.02 1.31 16 26 C 0.02 1.13 5.47 84.65 0.46 1.60 16 27 N -0.94 -59.92 13.96 21.45 0.30 -59.63 16 28 Si 0.95 44.05 27.47 68.60 1.88 45.94 16 29 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 30 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 31 H -0.24 -10.32 6.54 99.48 0.65 -9.66 16 32 H 0.05 0.80 7.68 -2.39 -0.02 0.78 16 33 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.07 0.64 7.87 -2.39 -0.02 0.62 16 43 H 0.08 0.58 7.87 -2.39 -0.02 0.56 16 44 H 0.07 0.52 8.08 -2.39 -0.02 0.50 16 45 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.42 6.79 8.34 -92.70 -0.77 6.01 16 48 H 0.23 5.45 8.06 -2.91 -0.02 5.42 16 49 H 0.24 4.77 8.06 -2.91 -0.02 4.75 16 50 H 0.06 2.85 7.20 -2.39 -0.02 2.83 16 51 H 0.05 2.72 7.57 -2.39 -0.02 2.71 16 52 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -81.73 420.55 1.69 -80.04 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.09 Total: 18.38 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 8.69 Total: 19.00 kcal Atomic # 7 Polarization: -148.57 SS G_CDS: -7.59 Total: -156.16 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -1.38 Total: -7.20 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.94 kcal Total: -81.73 1.69 -80.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200185.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.569 kcal (2) G-P(sol) polarization free energy of solvation -81.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds