Wall clock time and date at job start Tue Mar 31 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.52997 * 109.47415 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46978 * 300.00098 * 5 4 2 7 7 C 1.53002 * 109.47128 * 59.99726 * 6 5 4 8 8 C 1.52992 * 109.47106 * 300.00123 * 7 6 5 9 9 H 1.08998 * 109.46862 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.46980 * 299.99855 * 8 7 6 11 11 C 1.42905 * 114.00201 * 270.00182 * 10 8 7 12 12 C 1.52999 * 109.47009 * 179.97438 * 11 10 8 13 13 N 1.46501 * 109.46853 * 65.00408 * 12 11 10 14 14 C 1.38106 * 119.99797 * 179.97438 * 13 12 11 15 15 N 1.32864 * 120.81572 * 359.97438 * 14 13 12 16 16 C 1.32122 * 121.19621 * 179.97438 * 15 14 13 17 17 N 1.31499 * 122.64634 * 0.02562 * 16 15 14 18 18 C 1.33201 * 120.68659 * 359.97438 * 17 16 15 19 19 C 1.40819 * 120.81217 * 179.71273 * 14 13 12 20 20 C 1.41166 * 134.69737 * 0.69063 * 19 14 13 21 21 N 1.30256 * 108.46668 * 179.53653 * 20 19 14 22 22 N 1.36311 * 134.61812 * 180.02562 * 18 17 16 23 23 C 1.46498 * 125.87569 * 0.02562 * 22 18 17 24 24 C 1.50695 * 109.47128 * 90.00079 * 23 22 18 25 25 H 1.08000 * 120.00365 * 359.97438 * 24 23 22 26 26 C 1.37876 * 119.99906 * 180.02562 * 24 23 22 27 27 N 1.31515 * 120.00284 * 359.97438 * 26 24 23 28 28 Si 1.86800 * 119.99823 * 179.97438 * 26 24 23 29 29 H 1.48498 * 109.47498 * 359.97438 * 28 26 24 30 30 H 1.48509 * 109.47126 * 119.99961 * 28 26 24 31 31 H 1.48504 * 109.47273 * 239.99485 * 28 26 24 32 32 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 33 33 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 34 34 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46986 * 299.99797 * 4 2 1 36 36 H 1.09002 * 109.47075 * 59.99068 * 4 2 1 37 37 H 1.09002 * 109.47045 * 59.99931 * 5 4 2 38 38 H 1.08998 * 109.47171 * 179.97438 * 5 4 2 39 39 H 1.08996 * 109.46698 * 179.97438 * 6 5 4 40 40 H 1.09002 * 109.46838 * 299.99316 * 6 5 4 41 41 H 1.09002 * 109.47070 * 60.00059 * 7 6 5 42 42 H 1.08996 * 109.46550 * 179.97438 * 7 6 5 43 43 H 1.09001 * 109.46839 * 300.00345 * 11 10 8 44 44 H 1.09003 * 109.46545 * 59.99875 * 11 10 8 45 45 H 1.08997 * 109.46909 * 185.00072 * 12 11 10 46 46 H 1.08993 * 109.47109 * 305.00297 * 12 11 10 47 47 H 0.97001 * 119.99991 * 359.97438 * 13 12 11 48 48 H 1.07999 * 118.67698 * 179.97438 * 16 15 14 49 49 H 1.08000 * 125.76644 * 359.31389 * 20 19 14 50 50 H 1.08999 * 109.47295 * 210.00448 * 23 22 18 51 51 H 1.09002 * 109.46948 * 329.99985 * 23 22 18 52 52 H 0.97003 * 120.00347 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0795 -1.4435 -0.0003 7 6 3.5694 -0.7222 -1.2496 8 6 2.0395 -0.7216 -1.2492 9 1 1.6762 -0.2081 -2.1394 10 8 1.5627 -2.0688 -1.2490 11 6 1.3685 -2.6169 -2.5543 12 6 0.8602 -4.0549 -2.4332 13 7 -0.4667 -4.0531 -1.8123 14 6 -1.1308 -5.2450 -1.5988 15 7 -0.5817 -6.4026 -1.9507 16 6 -1.2101 -7.5473 -1.7496 17 7 -2.4015 -7.6150 -1.1972 18 6 -3.0351 -6.5092 -0.8099 19 6 -2.4042 -5.2637 -0.9979 20 6 -3.2866 -4.2756 -0.5103 21 7 -4.3563 -4.8649 -0.0574 22 7 -4.2386 -6.2505 -0.2246 23 6 -5.2374 -7.2498 0.1626 24 6 -4.9784 -7.6965 1.5783 25 1 -4.1521 -7.2782 2.1340 26 6 -5.7956 -8.6400 2.1640 27 7 -6.8015 -9.1497 1.4873 28 14 -5.4740 -9.1942 3.9186 29 1 -4.2911 -8.4751 4.4560 30 1 -6.6610 -8.8924 4.7585 31 1 -5.2141 -10.6562 3.9362 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.6767 -0.2075 2.1392 36 1 1.6766 -1.7489 1.2493 37 1 3.9337 0.3057 1.2487 38 1 3.9333 -1.2353 2.1391 39 1 5.1694 -1.4435 -0.0007 40 1 3.7158 -2.4710 -0.0001 41 1 3.9332 0.3054 -1.2498 42 1 3.9328 -1.2360 -2.1395 43 1 0.6367 -2.0167 -3.0952 44 1 2.3147 -2.6107 -3.0954 45 1 0.7966 -4.5025 -3.4250 46 1 1.5489 -4.6329 -1.8171 47 1 -0.8788 -3.2147 -1.5511 48 1 -0.7261 -8.4642 -2.0518 49 1 -3.1039 -3.2111 -0.5093 50 1 -6.2336 -6.8125 0.0961 51 1 -5.1717 -8.1075 -0.5068 52 1 -7.3762 -9.8138 1.8992 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200186.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:26 Heat of formation + Delta-G solvation = 26.210654 kcal Electronic energy + Delta-G solvation = -32206.036649 eV Core-core repulsion = 28012.393059 eV Total energy + Delta-G solvation = -4193.643590 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.79280 -40.52071 -39.82964 -37.98051 -36.60829 -35.70514 -33.87762 -33.42984 -32.92633 -31.78839 -30.79653 -29.43884 -28.90055 -26.98558 -25.58479 -25.09704 -24.18974 -23.39326 -23.00826 -22.08513 -21.56937 -20.48757 -19.37019 -18.81667 -18.68255 -17.72080 -17.31606 -16.92388 -16.63500 -16.58958 -16.37979 -16.00683 -15.39526 -15.29369 -15.18528 -15.01922 -14.92657 -14.71859 -14.33203 -14.10692 -13.95188 -13.85963 -13.65745 -13.63484 -13.04479 -12.99743 -12.78281 -12.73392 -12.47226 -12.44320 -12.38025 -12.32597 -12.26914 -12.05442 -11.77391 -11.68623 -11.50231 -11.33451 -11.25021 -10.78986 -10.76206 -10.59074 -10.24178 -10.04384 -9.75440 -8.94775 -8.35864 -6.52759 -0.01389 0.55013 1.32427 1.34518 1.40045 1.50677 1.64216 2.07261 2.31441 2.78024 2.93608 3.03658 3.29673 3.41344 3.68363 3.77468 3.80979 3.87670 3.93247 4.10355 4.12074 4.28135 4.31274 4.34122 4.44079 4.47205 4.55008 4.62734 4.65179 4.69797 4.72361 4.83137 4.86333 4.87763 4.94603 4.99776 5.02821 5.13327 5.16002 5.19608 5.27044 5.35288 5.40006 5.46857 5.47656 5.51285 5.55596 5.66198 5.76990 5.78351 5.99432 6.14822 6.42869 6.53134 6.59911 6.80772 7.16750 7.47616 8.71955 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.002215 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.492759 B =12639.549375 C =13444.238518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.089 0.911 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.113 4.113 7 C -0.138 4.138 8 C 0.094 3.906 9 H 0.074 0.926 10 O -0.387 6.387 11 C 0.052 3.948 12 C 0.135 3.865 13 N -0.677 5.677 14 C 0.517 3.483 15 N -0.616 5.616 16 C 0.376 3.624 17 N -0.606 5.606 18 C 0.336 3.664 19 C -0.346 4.346 20 C 0.100 3.900 21 N -0.290 5.290 22 N -0.366 5.366 23 C 0.285 3.715 24 C -0.551 4.551 25 H 0.044 0.956 26 C 0.019 3.981 27 N -0.919 5.919 28 Si 0.976 3.024 29 H -0.275 1.275 30 H -0.267 1.267 31 H -0.268 1.268 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.421 0.579 48 H 0.230 0.770 49 H 0.235 0.765 50 H 0.031 0.969 51 H 0.033 0.967 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.014 21.715 -9.544 33.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.107 0.893 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.176 4.176 8 C 0.037 3.963 9 H 0.092 0.908 10 O -0.306 6.306 11 C -0.025 4.025 12 C 0.011 3.989 13 N -0.309 5.309 14 C 0.262 3.738 15 N -0.347 5.347 16 C 0.083 3.917 17 N -0.334 5.334 18 C 0.089 3.911 19 C -0.364 4.364 20 C -0.094 4.094 21 N -0.106 5.106 22 N -0.153 5.153 23 C 0.166 3.834 24 C -0.589 4.589 25 H 0.062 0.938 26 C -0.181 4.181 27 N -0.557 5.557 28 Si 0.799 3.201 29 H -0.200 1.200 30 H -0.191 1.191 31 H -0.193 1.193 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.082 0.918 47 H 0.260 0.740 48 H 0.246 0.754 49 H 0.252 0.748 50 H 0.049 0.951 51 H 0.051 0.949 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 23.023 20.728 -9.075 32.281 hybrid contribution -0.161 0.118 0.790 0.815 sum 22.861 20.846 -8.285 32.029 Atomic orbital electron populations 1.21780 0.94804 1.01967 1.01832 1.21243 0.96085 0.99027 0.93946 0.89266 1.21481 0.95631 1.00345 0.97384 1.21520 0.95445 1.00801 0.97806 1.21385 0.99788 0.99375 0.94536 1.22019 0.95617 1.01653 0.98299 1.22174 0.93255 0.82635 0.98259 0.90782 1.87992 1.86619 1.28525 1.27491 1.22848 1.01235 0.92721 0.85696 1.21489 0.81963 0.96514 0.98885 1.44377 1.18892 1.04029 1.63555 1.18034 0.84259 0.88100 0.83415 1.68092 1.37628 0.97412 1.31599 1.25167 0.84584 0.96225 0.85686 1.67523 1.13125 1.30491 1.22274 1.19368 0.88016 0.91225 0.92467 1.19747 1.00747 0.95238 1.20696 1.24199 0.89025 1.01057 0.95146 1.76880 1.24440 0.87370 1.21868 1.49082 1.13855 1.04716 1.47639 1.19115 0.85127 0.83502 0.95663 1.21403 1.14511 1.24678 0.98309 0.93786 1.25798 0.94084 0.95181 1.03084 1.70019 1.17410 1.29149 1.39167 0.85251 0.78354 0.78370 0.78107 1.20001 1.19141 1.19326 0.92953 0.91902 0.92887 0.92495 0.93264 0.91342 0.92831 0.91976 0.93031 0.90154 0.91310 0.91139 0.89908 0.89161 0.91810 0.74026 0.75368 0.74842 0.95076 0.94944 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.05 71.98 0.65 -1.07 16 2 C -0.08 -0.93 2.55 -10.79 -0.03 -0.96 16 3 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.11 -1.60 5.06 30.59 0.15 -1.44 16 5 C -0.12 -1.50 5.92 30.59 0.18 -1.32 16 6 C -0.11 -1.39 5.78 30.60 0.18 -1.22 16 7 C -0.14 -1.25 5.63 30.59 0.17 -1.08 16 8 C 0.09 0.93 2.35 30.59 0.07 1.00 16 9 H 0.07 0.52 7.78 -2.39 -0.02 0.50 16 10 O -0.39 -5.06 7.91 -148.98 -1.18 -6.24 16 11 C 0.05 0.49 5.88 71.98 0.42 0.91 16 12 C 0.13 2.00 6.12 86.38 0.53 2.53 16 13 N -0.68 -13.37 5.63 -344.01 -1.94 -15.31 16 14 C 0.52 15.37 7.55 133.64 1.01 16.38 16 15 N -0.62 -18.93 9.69 -197.01 -1.91 -20.84 16 16 C 0.38 12.68 12.24 180.87 2.21 14.89 16 17 N -0.61 -26.86 10.47 -198.11 -2.07 -28.93 16 18 C 0.34 15.64 8.04 134.15 1.08 16.72 16 19 C -0.35 -12.69 6.14 -21.28 -0.13 -12.82 16 20 C 0.10 3.39 11.87 85.65 1.02 4.41 16 21 N -0.29 -13.02 12.45 -56.46 -0.70 -13.72 16 22 N -0.37 -18.83 3.63 -348.95 -1.27 -20.10 16 23 C 0.28 16.54 6.19 85.63 0.53 17.07 16 24 C -0.55 -33.51 9.39 25.60 0.24 -33.27 16 25 H 0.04 2.76 7.81 -2.91 -0.02 2.74 16 26 C 0.02 1.12 5.46 84.65 0.46 1.58 16 27 N -0.92 -55.28 13.29 21.45 0.28 -55.00 16 28 Si 0.98 45.85 29.54 68.60 2.03 47.88 16 29 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 30 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 31 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.75 7.68 -2.39 -0.02 0.74 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.05 0.95 7.68 -2.39 -0.02 0.93 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.05 0.84 7.68 -2.39 -0.02 0.82 16 41 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 0.55 7.87 -2.39 -0.02 0.53 16 43 H 0.07 0.48 8.08 -2.39 -0.02 0.46 16 44 H 0.08 0.53 7.87 -2.39 -0.02 0.51 16 45 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.42 6.73 8.34 -92.71 -0.77 5.96 16 48 H 0.23 5.61 8.06 -2.91 -0.02 5.58 16 49 H 0.24 4.87 8.06 -2.91 -0.02 4.85 16 50 H 0.03 1.88 8.14 -2.39 -0.02 1.86 16 51 H 0.03 2.00 8.14 -2.39 -0.02 1.98 16 52 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -77.13 422.07 2.14 -74.99 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.14 Total: 14.95 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 8.75 Total: 22.32 kcal Atomic # 7 Polarization: -146.29 SS G_CDS: -7.60 Total: -153.89 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -1.18 Total: -6.24 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -77.13 2.14 -74.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200186.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.197 kcal (2) G-P(sol) polarization free energy of solvation -77.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds