Wall clock time and date at job start Tue Mar 31 2020 07:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38065 * 119.57350 * 2 1 4 4 C 1.38839 * 119.32851 * 180.02562 * 3 2 1 5 5 C 1.38341 * 118.50530 * 359.75171 * 4 3 2 6 6 C 1.39094 * 119.09664 * 0.51252 * 5 4 3 7 7 N 1.39013 * 119.70714 * 179.75332 * 6 5 4 8 8 C 1.46505 * 119.99467 * 359.72666 * 7 6 5 9 9 C 1.53005 * 109.46905 * 180.02562 * 8 7 6 10 10 H 1.08997 * 110.87622 * 57.38562 * 9 8 7 11 11 C 1.55138 * 110.98728 * 293.54552 * 9 8 7 12 12 C 1.54321 * 103.01683 * 206.25591 * 11 9 8 13 13 N 1.47437 * 107.23376 * 22.28201 * 12 11 9 14 14 C 1.46903 * 110.99905 * 123.25931 * 13 12 11 15 15 H 1.09004 * 109.47028 * 298.94326 * 14 13 12 16 16 C 1.52993 * 109.47234 * 58.94089 * 14 13 12 17 17 C 1.50702 * 109.47224 * 178.94440 * 14 13 12 18 18 O 1.21282 * 119.99397 * 340.19957 * 17 14 13 19 19 N 1.34775 * 120.00014 * 160.19962 * 17 14 13 20 20 C 1.46496 * 120.00098 * 5.04281 * 19 17 14 21 21 C 1.46499 * 119.99681 * 185.31128 * 19 17 14 22 22 C 1.50705 * 109.47420 * 269.72731 * 21 19 17 23 23 H 1.07999 * 119.99607 * 0.02562 * 22 21 19 24 24 C 1.37872 * 120.00103 * 179.97438 * 22 21 19 25 25 N 1.31515 * 119.99895 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99790 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47257 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47118 * 120.00514 * 26 24 22 29 29 H 1.48504 * 109.47396 * 240.00089 * 26 24 22 30 30 C 1.47849 * 108.56797 * 0.99206 * 13 12 11 31 31 N 1.31940 * 119.57060 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47151 * 269.97514 * 1 2 3 33 33 H 1.09007 * 109.47046 * 29.97968 * 1 2 3 34 34 H 1.09011 * 109.47211 * 149.97445 * 1 2 3 35 35 H 1.08002 * 120.33531 * 0.02562 * 3 2 1 36 36 H 1.07994 * 120.74754 * 180.02562 * 4 3 2 37 37 H 1.07995 * 120.45575 * 180.26635 * 5 4 3 38 38 H 0.96994 * 120.00538 * 179.72886 * 7 6 5 39 39 H 1.08991 * 109.47164 * 60.00191 * 8 7 6 40 40 H 1.08997 * 109.47209 * 299.99716 * 8 7 6 41 41 H 1.09000 * 110.70694 * 87.87246 * 11 9 8 42 42 H 1.09007 * 110.85692 * 324.70623 * 11 9 8 43 43 H 1.09002 * 109.88762 * 262.87310 * 12 11 9 44 44 H 1.08998 * 109.88690 * 141.69169 * 12 11 9 45 45 H 1.09005 * 109.47401 * 290.83419 * 16 14 13 46 46 H 1.08998 * 109.47270 * 50.83601 * 16 14 13 47 47 H 1.08997 * 109.47086 * 170.83399 * 16 14 13 48 48 H 1.09004 * 109.46919 * 267.63420 * 20 19 17 49 49 H 1.09001 * 109.47392 * 27.63429 * 20 19 17 50 50 H 1.08994 * 109.47187 * 147.63779 * 20 19 17 51 51 H 1.09002 * 109.46998 * 29.73062 * 21 19 17 52 52 H 1.09002 * 109.47310 * 149.72832 * 21 19 17 53 53 H 0.97006 * 119.99570 * 179.97438 * 25 24 22 54 54 H 1.09005 * 110.37392 * 94.72949 * 30 13 12 55 55 H 1.08998 * 110.37198 * 217.07713 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5768 1.1949 -0.0005 5 6 4.2318 -0.0237 0.0042 6 6 3.4815 -1.1949 -0.0015 7 7 4.1267 -2.4263 -0.0021 8 6 5.5905 -2.4862 -0.0026 9 6 6.0411 -3.9484 -0.0038 10 1 5.6306 -4.4806 -0.8618 11 6 5.6522 -4.6507 1.3237 12 6 6.7028 -5.7747 1.4431 13 7 7.8629 -5.3769 0.6247 14 6 9.0901 -5.3446 1.4315 15 1 8.9794 -4.6132 2.2321 16 6 9.3398 -6.7279 2.0356 17 6 10.2560 -4.9602 0.5575 18 8 10.1774 -5.0827 -0.6466 19 7 11.3859 -4.4803 1.1138 20 6 11.5229 -4.4358 2.5717 21 6 12.4748 -3.9979 0.2607 22 6 13.4150 -5.1352 -0.0452 23 1 13.2206 -6.1191 0.3555 24 6 14.5227 -4.9199 -0.8374 25 7 14.7590 -3.7218 -1.3257 26 14 15.6884 -6.3295 -1.2159 27 1 15.2027 -7.5656 -0.5517 28 1 15.7433 -6.5459 -2.6841 29 1 17.0460 -5.9978 -0.7135 30 6 7.5862 -4.0529 0.0278 31 7 2.1581 -1.1475 -0.0005 32 1 -0.3633 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3634 -0.8898 -0.5143 35 1 1.6469 2.1353 0.0004 36 1 4.1329 2.1206 -0.0001 37 1 5.3109 -0.0650 0.0083 38 1 3.6078 -3.2457 -0.0021 39 1 5.9749 -1.9879 0.8872 40 1 5.9742 -1.9875 -0.8927 41 1 4.6472 -5.0677 1.2591 42 1 5.7284 -3.9610 2.1645 43 1 6.2885 -6.7108 1.0688 44 1 7.0054 -5.8904 2.4838 45 1 8.5816 -6.9371 2.7903 46 1 9.2886 -7.4820 1.2503 47 1 10.3272 -6.7501 2.4967 48 1 11.1904 -3.4646 2.9383 49 1 10.9127 -5.2209 3.0182 50 1 12.5673 -4.5885 2.8433 51 1 12.0618 -3.6076 -0.6695 52 1 13.0178 -3.2065 0.7774 53 1 15.5386 -3.5703 -1.8828 54 1 8.0075 -3.2616 0.6480 55 1 7.9909 -4.0002 -0.9829 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200897.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:02 Heat of formation + Delta-G solvation = -7.398090 kcal Electronic energy + Delta-G solvation = -32218.272312 eV Core-core repulsion = 28061.285770 eV Total energy + Delta-G solvation = -4156.986542 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.227 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.40750 -41.10592 -39.63222 -37.23173 -36.52954 -35.01252 -34.36077 -33.59512 -32.34661 -30.40200 -30.32489 -29.45088 -27.99770 -27.44810 -26.03051 -25.73937 -24.04747 -23.65931 -22.52895 -21.86274 -21.06026 -19.91230 -18.67965 -18.48100 -18.21232 -17.59370 -17.32385 -16.86979 -16.64507 -16.38274 -16.09154 -15.90130 -15.73162 -15.23806 -15.07980 -14.83612 -14.63228 -14.49064 -14.29311 -14.16507 -13.99594 -13.80402 -13.57332 -13.48731 -13.41202 -13.16449 -13.05785 -13.03430 -12.85003 -12.76876 -12.65575 -12.55625 -12.45927 -12.23644 -12.13305 -12.06805 -11.87667 -11.67364 -11.64152 -11.10975 -10.65794 -10.47169 -10.43738 -10.38210 -9.41029 -9.23484 -8.63059 -8.23105 -6.37475 0.35004 0.56169 1.34743 1.37623 1.49245 1.84425 2.08423 2.24554 2.41097 2.95637 2.96415 3.06263 3.50475 3.59724 3.67069 3.73150 3.77916 3.97039 4.08517 4.11310 4.17656 4.23247 4.26811 4.35768 4.38341 4.39925 4.45965 4.55324 4.64323 4.67337 4.70793 4.72561 4.73532 4.82739 4.84406 4.87180 4.92039 4.94926 4.99807 5.01793 5.12621 5.19975 5.20954 5.23793 5.28524 5.31266 5.42486 5.56072 5.68820 5.82278 5.94183 6.05807 6.08140 6.09048 6.61913 6.70614 6.81491 7.26208 7.28766 7.53010 8.83878 Molecular weight = 360.23amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.001805 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.286678 B =15512.818647 C =16541.811326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.156 3.844 3 C -0.241 4.241 4 C -0.035 4.035 5 C -0.263 4.263 6 C 0.390 3.610 7 N -0.718 5.718 8 C 0.148 3.852 9 C -0.095 4.095 10 H 0.089 0.911 11 C -0.124 4.124 12 C 0.041 3.959 13 N -0.529 5.529 14 C 0.074 3.926 15 H 0.083 0.917 16 C -0.139 4.139 17 C 0.498 3.502 18 O -0.578 6.578 19 N -0.612 5.612 20 C 0.072 3.928 21 C 0.262 3.738 22 C -0.539 4.539 23 H 0.051 0.949 24 C 0.006 3.994 25 N -0.929 5.929 26 Si 0.967 3.033 27 H -0.268 1.268 28 H -0.283 1.283 29 H -0.268 1.268 30 C 0.059 3.941 31 N -0.573 5.573 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.135 0.865 38 H 0.406 0.594 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.052 0.948 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.096 0.904 50 H 0.067 0.933 51 H -0.005 1.005 52 H 0.023 0.977 53 H 0.267 0.733 54 H 0.043 0.957 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.988 5.745 11.633 29.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.018 3.982 3 C -0.263 4.263 4 C -0.060 4.060 5 C -0.288 4.288 6 C 0.155 3.845 7 N -0.351 5.351 8 C 0.023 3.977 9 C -0.114 4.114 10 H 0.107 0.893 11 C -0.162 4.162 12 C -0.085 4.085 13 N -0.254 5.254 14 C -0.037 4.037 15 H 0.101 0.899 16 C -0.197 4.197 17 C 0.286 3.714 18 O -0.457 6.457 19 N -0.345 5.345 20 C -0.070 4.070 21 C 0.141 3.859 22 C -0.578 4.578 23 H 0.070 0.930 24 C -0.192 4.192 25 N -0.569 5.569 26 Si 0.791 3.209 27 H -0.192 1.192 28 H -0.209 1.209 29 H -0.193 1.193 30 C -0.069 4.069 31 N -0.293 5.293 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.153 0.847 38 H 0.242 0.758 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.120 0.880 46 H 0.071 0.929 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.114 0.886 50 H 0.085 0.915 51 H 0.013 0.987 52 H 0.041 0.959 53 H 0.076 0.924 54 H 0.061 0.939 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.029 4.646 10.538 29.381 hybrid contribution 1.575 0.556 -0.266 1.691 sum -25.455 5.202 10.273 27.938 Atomic orbital electron populations 1.20793 0.87101 1.04086 1.03826 1.21483 0.97810 0.87531 0.91375 1.21938 0.94948 0.99573 1.09876 1.21682 0.94759 0.98092 0.91500 1.21601 1.01286 0.92442 1.13479 1.18543 0.88386 0.86957 0.90640 1.44401 1.05587 1.04661 1.80439 1.21209 0.78778 0.96044 1.01647 1.22353 0.94033 0.95001 1.00027 0.89315 1.22809 0.99994 0.97298 0.96140 1.22978 0.89205 0.99152 0.97181 1.63290 1.02014 1.27589 1.32520 1.21769 0.88441 1.00333 0.93192 0.89939 1.21899 1.03441 0.93228 1.01096 1.21188 0.84390 0.77039 0.88799 1.90636 1.83001 1.54357 1.17659 1.48173 1.16193 1.61720 1.08396 1.22051 1.03627 1.02877 0.78422 1.18712 0.84028 0.94028 0.89153 1.21723 1.08381 0.96266 1.31399 0.93025 1.25854 0.99629 0.98547 0.95205 1.70057 1.29054 1.22878 1.34861 0.85377 0.78576 0.79062 0.77843 1.19183 1.20879 1.19274 1.22816 0.95001 0.89497 0.99601 1.66973 1.08001 1.31503 1.22814 0.89443 0.88559 0.91230 0.82799 0.82748 0.84747 0.75810 0.91260 0.92244 0.88922 0.90490 0.89845 0.90387 0.88006 0.92912 0.91014 0.91370 0.88617 0.91458 0.98705 0.95855 0.92447 0.93888 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 10.17 71.24 0.72 -0.42 16 2 C 0.16 2.85 6.78 42.50 0.29 3.13 16 3 C -0.24 -3.72 9.73 22.37 0.22 -3.50 16 4 C -0.03 -0.56 10.17 22.44 0.23 -0.34 16 5 C -0.26 -5.15 9.33 22.50 0.21 -4.94 16 6 C 0.39 8.50 7.65 133.04 1.02 9.52 16 7 N -0.72 -13.33 5.58 -345.07 -1.93 -15.25 16 8 C 0.15 2.64 4.34 86.38 0.37 3.01 16 9 C -0.09 -1.80 3.10 -9.41 -0.03 -1.83 16 10 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 11 C -0.12 -1.83 6.11 31.78 0.19 -1.64 16 12 C 0.04 0.75 6.24 86.65 0.54 1.29 16 13 N -0.53 -14.57 4.74 -864.75 -4.09 -18.66 16 14 C 0.07 2.13 1.25 44.17 0.06 2.18 16 15 H 0.08 1.92 7.35 -2.38 -0.02 1.90 16 16 C -0.14 -3.29 8.45 71.98 0.61 -2.68 16 17 C 0.50 20.98 6.27 87.66 0.55 21.53 16 18 O -0.58 -30.76 15.05 -3.04 -0.05 -30.81 16 19 N -0.61 -26.17 2.86 -851.13 -2.43 -28.61 16 20 C 0.07 2.14 9.83 127.77 1.26 3.40 16 21 C 0.26 14.34 5.14 85.63 0.44 14.78 16 22 C -0.54 -31.61 9.39 25.60 0.24 -31.37 16 23 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 24 C 0.01 0.37 5.46 84.65 0.46 0.84 16 25 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 26 Si 0.97 45.66 29.54 68.60 2.03 47.69 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 28 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 29 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 30 C 0.06 1.63 5.05 86.77 0.44 2.07 16 31 N -0.57 -13.00 10.31 -181.33 -1.87 -14.87 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.66 8.08 -2.38 -0.02 0.64 16 34 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 36 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.13 2.39 6.71 -2.91 -0.02 2.37 16 38 H 0.41 6.98 8.46 -92.71 -0.78 6.19 16 39 H 0.07 1.18 7.88 -2.39 -0.02 1.16 16 40 H 0.06 1.16 7.94 -2.39 -0.02 1.14 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 1.06 8.02 -2.38 -0.02 1.04 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.08 1.11 6.29 -2.39 -0.02 1.10 16 45 H 0.10 1.59 6.75 -2.38 -0.02 1.57 16 46 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.07 1.69 6.15 -2.39 -0.01 1.67 16 48 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.10 2.17 4.64 -2.39 -0.01 2.16 16 50 H 0.07 2.10 8.09 -2.39 -0.02 2.08 16 51 H -0.01 -0.33 7.49 -2.39 -0.02 -0.35 16 52 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 53 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 54 H 0.04 1.17 7.66 -2.38 -0.02 1.15 16 55 H 0.05 1.92 7.49 -2.39 -0.02 1.90 16 Total: -1.00 -80.60 433.40 -0.14 -80.75 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.10 Total: 21.24 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 7.82 Total: 15.03 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -10.04 Total: -133.89 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.05 Total: -30.81 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -80.60 -0.14 -80.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200897.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.349 kcal (2) G-P(sol) polarization free energy of solvation -80.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds