Wall clock time and date at job start Tue Mar 31 2020 07:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38071 * 119.57704 * 2 1 4 4 C 1.38838 * 119.32631 * 179.72200 * 3 2 1 5 5 C 1.38338 * 118.51017 * 0.28057 * 4 3 2 6 6 C 1.39097 * 119.09689 * 0.02562 * 5 4 3 7 7 N 1.39006 * 119.70321 * 180.02562 * 6 5 4 8 8 C 1.46500 * 120.00260 * 359.97438 * 7 6 5 9 9 C 1.53003 * 109.46967 * 180.02562 * 8 7 6 10 10 H 1.08992 * 110.63068 * 308.10125 * 9 8 7 11 11 C 1.55145 * 110.70412 * 71.40256 * 9 8 7 12 12 C 1.54905 * 101.64996 * 154.03536 * 11 9 8 13 13 N 1.47841 * 104.79626 * 322.92318 * 12 11 9 14 14 C 1.46903 * 111.00033 * 146.36469 * 13 12 11 15 15 H 1.08993 * 109.47135 * 292.96769 * 14 13 12 16 16 C 1.52999 * 109.46913 * 52.96842 * 14 13 12 17 17 C 1.50702 * 109.47342 * 172.96576 * 14 13 12 18 18 O 1.21282 * 120.00118 * 0.02562 * 17 14 13 19 19 N 1.34775 * 120.00142 * 180.02562 * 17 14 13 20 20 C 1.46510 * 119.99860 * 359.97438 * 19 17 14 21 21 C 1.46497 * 120.00322 * 180.02562 * 19 17 14 22 22 C 1.50703 * 109.47342 * 89.99425 * 21 19 17 23 23 H 1.08001 * 119.99536 * 0.02562 * 22 21 19 24 24 C 1.37875 * 119.99935 * 180.02562 * 22 21 19 25 25 N 1.31516 * 120.00073 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99908 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46921 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47132 * 119.99984 * 26 24 22 29 29 H 1.48496 * 109.46856 * 240.00433 * 26 24 22 30 30 C 1.47443 * 108.56843 * 24.10385 * 13 12 11 31 31 N 1.31950 * 119.57286 * 180.32210 * 2 1 3 32 32 H 1.09000 * 109.46974 * 89.99348 * 1 2 3 33 33 H 1.08995 * 109.47064 * 209.99827 * 1 2 3 34 34 H 1.08997 * 109.46569 * 330.00042 * 1 2 3 35 35 H 1.07999 * 120.33310 * 0.02562 * 3 2 1 36 36 H 1.08001 * 120.74589 * 180.30082 * 4 3 2 37 37 H 1.07998 * 120.45367 * 180.02562 * 5 4 3 38 38 H 0.97001 * 119.99597 * 179.97438 * 7 6 5 39 39 H 1.08998 * 109.46631 * 300.00075 * 8 7 6 40 40 H 1.09000 * 109.46901 * 60.00068 * 8 7 6 41 41 H 1.09002 * 110.98531 * 272.12529 * 11 9 8 42 42 H 1.08998 * 110.99125 * 35.93756 * 11 9 8 43 43 H 1.09003 * 110.37226 * 204.09732 * 12 11 9 44 44 H 1.08993 * 110.47045 * 81.80353 * 12 11 9 45 45 H 1.09000 * 109.47319 * 66.99300 * 16 14 13 46 46 H 1.09000 * 109.47727 * 186.99518 * 16 14 13 47 47 H 1.09002 * 109.47191 * 306.99577 * 16 14 13 48 48 H 1.08998 * 109.46480 * 89.99895 * 20 19 17 49 49 H 1.08998 * 109.46863 * 210.00429 * 20 19 17 50 50 H 1.08999 * 109.47070 * 330.00346 * 20 19 17 51 51 H 1.08994 * 109.47320 * 210.00148 * 21 19 17 52 52 H 1.09004 * 109.47033 * 329.99737 * 21 19 17 53 53 H 0.97001 * 119.99902 * 179.97438 * 25 24 22 54 54 H 1.08999 * 109.88604 * 239.60409 * 30 13 12 55 55 H 1.08996 * 109.89397 * 118.41069 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2008 0.0000 4 6 3.5768 1.1947 0.0059 5 6 4.2318 -0.0238 0.0056 6 6 3.4815 -1.1950 -0.0011 7 7 4.1267 -2.4263 -0.0009 8 6 5.5905 -2.4863 0.0058 9 6 6.0409 -3.9486 0.0039 10 1 5.5487 -4.5030 0.8028 11 6 5.7664 -4.6053 -1.3747 12 6 6.8342 -5.7271 -1.4049 13 7 8.0214 -5.1360 -0.7516 14 6 8.7708 -6.1530 -0.0018 15 1 8.1729 -6.4958 0.8425 16 6 9.0827 -7.3366 -0.9198 17 6 10.0590 -5.5566 0.5041 18 8 10.3263 -4.3982 0.2641 19 7 10.9140 -6.3104 1.2232 20 6 10.5908 -7.7096 1.5136 21 6 12.1660 -5.7305 1.7155 22 6 11.9404 -5.1330 3.0805 23 1 10.9623 -5.1810 3.5360 24 6 12.9826 -4.5253 3.7479 25 7 14.1735 -4.4665 3.1930 26 14 12.7032 -3.7854 5.4402 27 1 11.2863 -3.9823 5.8387 28 1 13.5913 -4.4533 6.4253 29 1 13.0098 -2.3329 5.4021 30 6 7.5752 -4.0470 0.1365 31 7 2.1582 -1.1476 -0.0065 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3632 0.8900 0.5138 35 1 1.6470 2.1352 0.0004 36 1 4.1330 2.1205 0.0109 37 1 5.3110 -0.0651 0.0105 38 1 3.6077 -3.2457 -0.0051 39 1 5.9786 -1.9858 -0.8813 40 1 5.9704 -1.9899 0.8986 41 1 4.7603 -5.0226 -1.4149 42 1 5.9248 -3.8934 -2.1847 43 1 7.0653 -6.0034 -2.4337 44 1 6.4884 -6.5976 -0.8475 45 1 9.7814 -7.0212 -1.6947 46 1 9.5276 -8.1422 -0.3357 47 1 8.1615 -7.6898 -1.3831 48 1 10.9838 -8.3454 0.7203 49 1 11.0393 -7.9962 2.4648 50 1 9.5088 -7.8280 1.5718 51 1 12.9261 -6.5089 1.7806 52 1 12.5006 -4.9525 1.0292 53 1 14.9067 -4.0386 3.6623 54 1 8.0349 -3.1072 -0.1695 55 1 7.8443 -4.2755 1.1677 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200898.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:07 Heat of formation + Delta-G solvation = -5.172350 kcal Electronic energy + Delta-G solvation = -32273.178019 eV Core-core repulsion = 28116.287992 eV Total energy + Delta-G solvation = -4156.890027 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.227 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.41522 -41.11449 -39.64372 -37.23038 -36.56484 -35.07829 -34.32601 -33.60418 -32.33904 -30.45613 -30.34851 -29.27671 -28.00395 -27.53725 -26.00392 -25.67597 -24.04031 -23.65838 -22.51406 -21.77662 -21.33176 -19.90803 -18.71745 -18.50954 -17.90757 -17.65471 -17.40310 -16.90187 -16.64233 -16.36423 -16.27039 -15.87562 -15.65419 -15.21987 -15.05193 -14.88156 -14.71721 -14.46843 -14.17174 -14.15895 -13.81779 -13.77043 -13.70435 -13.51012 -13.34597 -13.14820 -13.07590 -13.00386 -12.87948 -12.79127 -12.66862 -12.55493 -12.37412 -12.26732 -12.12064 -12.02213 -11.83854 -11.69773 -11.68326 -11.11083 -10.66851 -10.47956 -10.45104 -10.39212 -9.38989 -9.23512 -8.63754 -8.23924 -6.38903 0.34052 0.55077 1.33679 1.36053 1.47552 1.88115 2.09075 2.24598 2.40084 2.95230 3.01637 3.05138 3.48315 3.54098 3.64194 3.74491 3.79649 3.96332 4.05526 4.11965 4.16924 4.24652 4.35058 4.38394 4.39317 4.41716 4.44255 4.52953 4.64079 4.66728 4.72630 4.73897 4.78995 4.82356 4.83965 4.86831 4.95129 4.97958 5.00962 5.05404 5.10210 5.19164 5.22755 5.23221 5.26496 5.30102 5.41767 5.55147 5.68060 5.82611 5.94993 6.05113 6.07706 6.09427 6.62195 6.69449 6.82156 7.25115 7.27461 7.53493 8.83035 Molecular weight = 360.23amu Principal moments of inertia in cm(-1) A = 0.010045 B = 0.002104 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.799306 B =13303.732916 C =15441.941325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.156 3.844 3 C -0.240 4.240 4 C -0.036 4.036 5 C -0.265 4.265 6 C 0.390 3.610 7 N -0.717 5.717 8 C 0.149 3.851 9 C -0.108 4.108 10 H 0.092 0.908 11 C -0.112 4.112 12 C 0.044 3.956 13 N -0.528 5.528 14 C 0.073 3.927 15 H 0.077 0.923 16 C -0.146 4.146 17 C 0.498 3.502 18 O -0.580 6.580 19 N -0.611 5.611 20 C 0.077 3.923 21 C 0.261 3.739 22 C -0.539 4.539 23 H 0.051 0.949 24 C 0.006 3.994 25 N -0.928 5.928 26 Si 0.967 3.033 27 H -0.268 1.268 28 H -0.268 1.268 29 H -0.282 1.282 30 C 0.069 3.931 31 N -0.571 5.571 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.132 0.868 38 H 0.406 0.594 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.090 0.910 51 H 0.023 0.977 52 H -0.005 1.005 53 H 0.267 0.733 54 H 0.059 0.941 55 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.145 0.080 -8.803 28.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.018 3.982 3 C -0.263 4.263 4 C -0.061 4.061 5 C -0.290 4.290 6 C 0.154 3.846 7 N -0.350 5.350 8 C 0.024 3.976 9 C -0.128 4.128 10 H 0.110 0.890 11 C -0.150 4.150 12 C -0.083 4.083 13 N -0.253 5.253 14 C -0.039 4.039 15 H 0.095 0.905 16 C -0.204 4.204 17 C 0.286 3.714 18 O -0.459 6.459 19 N -0.343 5.343 20 C -0.065 4.065 21 C 0.140 3.860 22 C -0.578 4.578 23 H 0.069 0.931 24 C -0.193 4.193 25 N -0.567 5.567 26 Si 0.791 3.209 27 H -0.192 1.192 28 H -0.193 1.193 29 H -0.208 1.208 30 C -0.060 4.060 31 N -0.290 5.290 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.173 0.827 36 H 0.171 0.829 37 H 0.150 0.850 38 H 0.243 0.757 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.109 0.891 47 H 0.114 0.886 48 H 0.094 0.906 49 H 0.083 0.917 50 H 0.109 0.891 51 H 0.041 0.959 52 H 0.014 0.986 53 H 0.076 0.924 54 H 0.077 0.923 55 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -26.692 0.131 -9.279 28.259 hybrid contribution 0.809 0.813 1.626 1.990 sum -25.883 0.944 -7.652 27.007 Atomic orbital electron populations 1.20786 0.86981 1.04116 1.03847 1.21508 0.97859 0.87519 0.91337 1.21936 0.94838 0.99638 1.09867 1.21677 0.94841 0.98025 0.91568 1.21602 1.01223 0.92598 1.13530 1.18539 0.88426 0.86959 0.90633 1.44401 1.05551 1.04641 1.80422 1.21233 0.78654 0.96354 1.01390 1.22512 0.94936 0.95495 0.99811 0.88982 1.22749 0.99436 0.97371 0.95419 1.23192 0.87840 0.96955 1.00296 1.63276 1.22903 1.09357 1.29770 1.21726 0.91716 0.93310 0.97169 0.90512 1.22089 1.03835 0.95249 0.99198 1.21205 0.86336 0.85998 0.77891 1.90625 1.76987 1.19266 1.59051 1.48127 1.21093 1.13058 1.52067 1.22091 1.02186 0.80403 1.01867 1.18715 0.81520 0.92822 0.92967 1.21697 0.95914 1.37555 1.02615 0.93090 1.25866 0.94720 0.96219 1.02461 1.70060 1.01856 1.44903 1.39924 0.85379 0.78497 0.78009 0.78987 1.19202 1.19309 1.20765 1.22492 0.93176 0.95805 0.94533 1.66979 1.07836 1.31446 1.22770 0.89425 0.91150 0.88558 0.82742 0.82851 0.85033 0.75742 0.91614 0.92567 0.88373 0.90907 0.89107 0.91414 0.93199 0.89073 0.88609 0.90620 0.91663 0.89116 0.95897 0.98644 0.92412 0.92282 0.95061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 10.17 71.23 0.72 -0.46 16 2 C 0.16 2.97 6.78 42.50 0.29 3.26 16 3 C -0.24 -3.97 9.73 22.37 0.22 -3.75 16 4 C -0.04 -0.63 10.17 22.44 0.23 -0.40 16 5 C -0.26 -5.69 9.33 22.50 0.21 -5.48 16 6 C 0.39 9.02 7.65 133.05 1.02 10.04 16 7 N -0.72 -14.15 5.64 -345.08 -1.95 -16.10 16 8 C 0.15 2.96 4.19 86.38 0.36 3.32 16 9 C -0.11 -2.09 2.96 -9.61 -0.03 -2.12 16 10 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 11 C -0.11 -1.78 6.44 31.98 0.21 -1.58 16 12 C 0.04 0.78 5.22 86.77 0.45 1.24 16 13 N -0.53 -14.77 4.76 -864.77 -4.12 -18.89 16 14 C 0.07 2.09 1.26 44.17 0.06 2.15 16 15 H 0.08 1.96 7.33 -2.39 -0.02 1.94 16 16 C -0.15 -3.12 8.65 71.98 0.62 -2.50 16 17 C 0.50 21.13 6.60 87.66 0.58 21.71 16 18 O -0.58 -30.80 14.91 -3.04 -0.05 -30.85 16 19 N -0.61 -26.21 2.86 -851.11 -2.43 -28.64 16 20 C 0.08 2.25 8.79 127.77 1.12 3.38 16 21 C 0.26 14.35 5.16 85.63 0.44 14.79 16 22 C -0.54 -31.48 9.39 25.60 0.24 -31.24 16 23 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 24 C 0.01 0.36 5.46 84.65 0.46 0.83 16 25 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 26 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 28 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 29 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 30 C 0.07 2.00 5.04 86.65 0.44 2.44 16 31 N -0.57 -13.39 10.31 -181.33 -1.87 -15.25 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.10 0.70 8.08 -2.39 -0.02 0.68 16 35 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 36 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.13 2.69 6.71 -2.91 -0.02 2.67 16 38 H 0.41 7.14 8.60 -92.71 -0.80 6.35 16 39 H 0.07 1.36 7.78 -2.39 -0.02 1.34 16 40 H 0.06 1.24 7.93 -2.39 -0.02 1.22 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.28 7.94 -2.39 -0.02 1.26 16 43 H 0.09 1.50 8.11 -2.39 -0.02 1.48 16 44 H 0.07 0.97 7.30 -2.39 -0.02 0.95 16 45 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 46 H 0.09 1.65 4.75 -2.39 -0.01 1.64 16 47 H 0.10 1.43 6.42 -2.39 -0.02 1.42 16 48 H 0.08 1.81 7.11 -2.39 -0.02 1.80 16 49 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 50 H 0.09 2.03 5.93 -2.39 -0.01 2.02 16 51 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 52 H 0.00 -0.29 7.42 -2.38 -0.02 -0.31 16 53 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 54 H 0.06 2.03 7.82 -2.39 -0.02 2.01 16 55 H 0.03 1.05 7.24 -2.39 -0.02 1.03 16 Total: -1.00 -80.53 431.12 -0.37 -80.91 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.09 Total: 22.25 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 7.64 Total: 15.61 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -10.08 Total: -135.36 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.05 Total: -30.85 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -80.53 -0.37 -80.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200898.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.733 kcal (2) G-P(sol) polarization free energy of solvation -80.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds