Wall clock time and date at job start Tue Mar 31 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00056 * 2 1 4 4 H 1.48499 * 109.47109 * 239.99967 * 3 2 1 5 5 H 1.48502 * 109.46915 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47360 * 119.99910 * 3 2 1 7 7 C 1.37873 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00264 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00409 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47277 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00236 * 269.99880 * 10 9 7 12 12 C 1.50698 * 109.47341 * 270.00263 * 11 10 9 13 13 C 1.38680 * 120.41725 * 269.72047 * 12 11 10 14 14 C 1.38621 * 118.41756 * 179.78528 * 13 12 11 15 15 C 1.38230 * 119.16256 * 0.50825 * 14 13 12 16 16 N 1.31857 * 120.76127 * 359.73468 * 15 14 13 17 17 C 1.31881 * 121.72732 * 359.97438 * 16 15 14 18 18 C 1.34780 * 119.99499 * 90.00597 * 10 9 7 19 19 O 1.21283 * 119.99390 * 180.02562 * 18 10 9 20 20 C 1.50697 * 120.00207 * 359.97438 * 18 10 9 21 21 C 1.50706 * 109.47024 * 180.02562 * 20 18 10 22 22 C 1.38271 * 119.94752 * 265.02185 * 21 20 18 23 23 C 1.38130 * 120.06704 * 180.02562 * 22 21 20 24 24 C 1.38764 * 119.96799 * 359.97438 * 23 22 21 25 25 O 1.35899 * 120.04786 * 180.02562 * 24 23 22 26 26 C 1.38687 * 119.90219 * 359.71350 * 24 23 22 27 27 C 1.38277 * 119.93542 * 0.56402 * 26 24 23 28 28 Cl 1.73599 * 119.99052 * 179.73127 * 27 26 24 29 29 H 0.96996 * 119.99688 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46968 * 59.99947 * 9 7 2 31 31 H 1.08999 * 109.46729 * 300.00356 * 9 7 2 32 32 H 1.08996 * 109.46658 * 30.00689 * 11 10 9 33 33 H 1.09003 * 109.46872 * 150.00134 * 11 10 9 34 34 H 1.08002 * 120.78925 * 0.02562 * 13 12 11 35 35 H 1.08005 * 120.42012 * 180.22592 * 14 13 12 36 36 H 1.07996 * 119.61915 * 179.74740 * 15 14 13 37 37 H 1.08006 * 119.61599 * 180.02562 * 17 16 15 38 38 H 1.08999 * 109.47130 * 60.00383 * 20 18 10 39 39 H 1.08999 * 109.47119 * 300.00089 * 20 18 10 40 40 H 1.08003 * 119.96643 * 0.02562 * 22 21 20 41 41 H 1.07997 * 120.01397 * 180.02562 * 23 22 21 42 42 H 0.96702 * 113.99615 * 90.00169 * 25 24 23 43 43 H 1.08000 * 120.03116 * 180.31815 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 -1.2681 12 6 1.7623 -5.2836 -1.7032 13 6 2.0115 -6.5908 -1.3127 14 6 1.1389 -7.5825 -1.7329 15 6 0.0631 -7.2396 -2.5303 16 7 -0.1399 -5.9864 -2.8865 17 6 0.6661 -5.0165 -2.5007 18 6 2.6408 -4.1249 1.1678 19 8 3.4293 -5.0464 1.1678 20 6 2.1514 -3.5518 2.4729 21 6 2.7881 -4.2959 3.6184 22 6 2.1212 -5.3523 4.2110 23 6 2.7022 -6.0356 5.2614 24 6 3.9567 -5.6620 5.7221 25 8 4.5301 -6.3335 6.7551 26 6 4.6273 -4.6064 5.1225 27 6 4.0394 -3.9214 4.0750 28 17 4.8746 -2.5955 3.3280 29 1 -0.4849 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.6869 -3.3878 -2.0277 33 1 3.6885 -4.5595 -1.1377 34 1 2.8629 -6.8298 -0.6927 35 1 1.3001 -8.6109 -1.4447 36 1 -0.6190 -8.0070 -2.8653 37 1 0.4672 -4.0016 -2.8123 38 1 1.0678 -3.6535 2.5307 39 1 2.4211 -2.4973 2.5304 40 1 1.1450 -5.6434 3.8522 41 1 2.1807 -6.8608 5.7234 42 1 5.0723 -7.0863 6.4822 43 1 5.6059 -4.3172 5.4760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097236544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:27 Heat of formation + Delta-G solvation = -43.398893 kcal Electronic energy + Delta-G solvation = -29455.075691 eV Core-core repulsion = 25297.445167 eV Total energy + Delta-G solvation = -4157.630524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.103 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.47220 -40.95146 -40.14179 -38.16367 -37.17263 -36.76650 -34.84589 -33.73550 -33.02869 -32.37571 -31.82341 -29.34614 -28.58337 -26.72665 -24.96983 -24.31333 -23.93583 -23.40632 -22.51201 -20.02973 -19.48299 -18.66421 -18.13904 -17.80505 -17.44801 -17.32065 -16.99520 -16.72054 -16.42979 -16.28874 -16.13390 -15.46500 -15.19498 -14.83107 -14.56407 -14.52649 -14.37684 -14.19511 -13.93214 -13.84078 -13.56029 -13.46274 -13.22971 -12.92397 -12.79146 -12.68198 -12.58673 -12.39794 -12.30207 -12.06437 -11.81609 -11.72740 -11.59064 -10.92763 -10.69881 -10.53770 -10.43712 -9.97412 -9.88408 -9.49178 -9.46563 -8.18579 -6.31687 0.04225 0.14982 0.17951 0.35377 1.13249 1.41671 1.43580 1.49757 1.78294 2.24029 2.41285 2.58682 2.98363 3.12642 3.22612 3.55739 3.69746 3.74910 3.78894 3.90493 4.02874 4.03948 4.11858 4.14196 4.26654 4.45493 4.49793 4.55962 4.69526 4.76099 4.76962 4.84630 4.87562 4.94095 5.05703 5.20821 5.23618 5.27054 5.38445 5.39751 5.64046 5.67418 5.79597 5.82314 6.07621 6.56233 6.80463 6.82896 7.03113 7.31432 7.42964 8.86737 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.006532 B = 0.004631 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4285.450588 B = 6044.569158 C = 9415.856095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.029 3.971 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.255 3.745 10 N -0.593 5.593 11 C 0.163 3.837 12 C -0.153 4.153 13 C -0.063 4.063 14 C -0.168 4.168 15 C 0.089 3.911 16 N -0.511 5.511 17 C 0.100 3.900 18 C 0.527 3.473 19 O -0.574 6.574 20 C -0.100 4.100 21 C -0.072 4.072 22 C -0.084 4.084 23 C -0.134 4.134 24 C 0.117 3.883 25 O -0.499 6.499 26 C -0.145 4.145 27 C -0.020 4.020 28 Cl -0.074 7.074 29 H 0.267 0.733 30 H 0.023 0.977 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.166 0.834 36 H 0.185 0.815 37 H 0.148 0.852 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.149 0.851 41 H 0.162 0.838 42 H 0.413 0.587 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -15.335 6.171 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.172 4.172 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.071 0.929 9 C 0.134 3.866 10 N -0.323 5.323 11 C 0.039 3.961 12 C -0.157 4.157 13 C -0.090 4.090 14 C -0.188 4.188 15 C -0.068 4.068 16 N -0.220 5.220 17 C -0.056 4.056 18 C 0.317 3.683 19 O -0.455 6.455 20 C -0.140 4.140 21 C -0.074 4.074 22 C -0.102 4.102 23 C -0.152 4.152 24 C 0.072 3.928 25 O -0.313 6.313 26 C -0.164 4.164 27 C -0.047 4.047 28 Cl -0.045 7.045 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.184 0.816 36 H 0.202 0.798 37 H 0.165 0.835 38 H 0.125 0.875 39 H 0.118 0.882 40 H 0.166 0.834 41 H 0.179 0.821 42 H 0.273 0.727 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.113 -14.926 5.897 16.567 hybrid contribution 1.342 1.181 -0.031 1.788 sum 5.455 -13.746 5.866 15.909 Atomic orbital electron populations 1.69987 1.07019 1.28081 1.50487 1.25503 0.95391 1.01771 0.94528 0.85819 0.78625 0.79753 0.78808 1.19738 1.20768 1.20006 1.21595 0.93241 0.91440 1.51661 0.92903 1.19075 0.87369 0.82638 0.97510 1.48162 1.45350 1.34054 1.04696 1.20135 0.96127 0.93727 0.86065 1.21252 0.98614 0.96203 0.99585 1.21746 0.99119 0.92104 0.95988 1.22455 0.95584 1.01597 0.99124 1.23334 0.96320 0.93217 0.93933 1.67712 1.29278 1.01917 1.23074 1.22708 0.90200 0.98639 0.94093 1.20367 0.80395 0.82035 0.85548 1.90561 1.36207 1.30728 1.87984 1.20639 1.02085 1.01282 0.89972 1.19416 0.93507 0.97571 0.96879 1.21074 1.00613 0.93243 0.95320 1.21691 0.95646 1.01437 0.96441 1.18225 0.92517 0.93334 0.88680 1.84773 1.68587 1.48087 1.29804 1.21368 1.01734 0.97726 0.95599 1.20737 0.93737 0.93180 0.97051 1.98384 1.77842 1.46278 1.82019 0.92400 0.95873 0.95402 0.89462 0.89890 0.84702 0.81643 0.79775 0.83472 0.87461 0.88162 0.83351 0.82082 0.72691 0.83506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.52 13.29 21.45 0.28 -49.23 16 2 C 0.03 1.49 5.46 84.65 0.46 1.95 16 3 Si 0.94 41.55 29.54 68.60 2.03 43.58 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.54 -27.16 9.28 25.60 0.24 -26.93 16 8 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 9 C 0.25 11.65 4.96 85.63 0.43 12.07 16 10 N -0.59 -23.60 2.44 -830.51 -2.03 -25.62 16 11 C 0.16 5.75 5.56 85.63 0.48 6.22 16 12 C -0.15 -4.93 5.48 -19.77 -0.11 -5.04 16 13 C -0.06 -1.78 9.86 22.47 0.22 -1.56 16 14 C -0.17 -3.81 10.11 22.36 0.23 -3.58 16 15 C 0.09 2.15 11.18 84.69 0.95 3.10 16 16 N -0.51 -15.94 10.36 -195.84 -2.03 -17.96 16 17 C 0.10 3.30 10.86 84.67 0.92 4.22 16 18 C 0.53 20.45 7.66 87.66 0.67 21.12 16 19 O -0.57 -23.02 15.27 -3.04 -0.05 -23.07 16 20 C -0.10 -3.59 3.89 29.10 0.11 -3.48 16 21 C -0.07 -2.28 4.38 -19.82 -0.09 -2.36 16 22 C -0.08 -2.14 9.67 22.25 0.22 -1.93 16 23 C -0.13 -2.84 9.99 22.37 0.22 -2.61 16 24 C 0.12 2.61 6.70 22.50 0.15 2.76 16 25 O -0.50 -8.64 13.50 -92.41 -1.25 -9.89 16 26 C -0.15 -3.75 9.77 22.39 0.22 -3.53 16 27 C -0.02 -0.63 6.31 22.31 0.14 -0.49 16 28 Cl -0.07 -2.51 27.39 -2.72 -0.07 -2.59 16 29 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 30 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 31 H 0.03 1.33 6.44 -2.39 -0.02 1.31 16 32 H 0.09 3.07 8.02 -2.39 -0.02 3.05 16 33 H 0.08 2.90 7.37 -2.39 -0.02 2.88 16 34 H 0.14 3.87 7.71 -2.91 -0.02 3.84 16 35 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 36 H 0.19 3.02 8.06 -2.91 -0.02 3.00 16 37 H 0.15 4.96 8.06 -2.91 -0.02 4.93 16 38 H 0.11 3.60 7.31 -2.39 -0.02 3.59 16 39 H 0.10 4.01 6.98 -2.39 -0.02 3.99 16 40 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 41 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 42 H 0.41 3.03 9.06 -74.06 -0.67 2.36 16 43 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -64.25 389.69 2.73 -61.53 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.39 Total: 23.33 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 5.45 Total: -0.07 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -3.77 Total: -92.82 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -1.29 Total: -32.96 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.07 Total: -2.59 kcal Total: -64.25 2.73 -61.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097236544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.127 kcal (2) G-P(sol) polarization free energy of solvation -64.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds