Wall clock time and date at job start Tue Mar 31 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35954 * 116.99792 * 2 1 4 4 C 1.38078 * 120.00002 * 0.25807 * 3 2 1 5 5 C 1.39984 * 119.83919 * 180.31741 * 4 3 2 6 6 C 1.46960 * 120.08242 * 179.69599 * 5 4 3 7 7 C 1.35024 * 120.00002 * 131.45291 * 6 5 4 8 8 C 1.46255 * 119.99843 * 349.12537 * 7 6 5 9 9 O 1.21727 * 120.00346 * 352.97204 * 8 7 6 10 10 N 1.34777 * 120.00070 * 172.97221 * 8 7 6 11 11 C 1.47080 * 120.88151 * 353.31871 * 10 8 7 12 12 C 1.53237 * 108.52246 * 128.83370 * 11 10 8 13 13 N 1.46895 * 109.34080 * 53.83337 * 12 11 10 14 14 C 1.46902 * 111.00465 * 172.74628 * 13 12 11 15 15 C 1.46906 * 111.26628 * 296.89319 * 13 12 11 16 16 C 1.47085 * 120.88322 * 173.33553 * 10 8 7 17 17 H 1.09000 * 109.62395 * 111.45721 * 16 10 8 18 18 C 1.52997 * 109.62795 * 351.07346 * 16 10 8 19 19 C 1.40035 * 119.83477 * 359.42669 * 5 4 3 20 20 C 1.37638 * 120.00293 * 0.27298 * 19 5 4 21 21 C 1.39061 * 120.16376 * 0.02562 * 20 19 5 22 22 O 1.35608 * 119.91968 * 179.97438 * 21 20 19 23 23 C 1.34767 * 117.00282 * 6.73903 * 22 21 20 24 24 H 1.07993 * 119.99951 * 5.89548 * 23 22 21 25 25 C 1.38707 * 119.99979 * 185.90044 * 23 22 21 26 26 N 1.31520 * 120.00244 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99837 * 179.97438 * 25 23 22 28 28 H 1.48495 * 109.47007 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.46777 * 119.99747 * 27 25 23 30 30 H 1.48494 * 109.46990 * 239.99495 * 27 25 23 31 31 H 1.08999 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47209 * 299.99853 * 1 2 3 33 33 H 1.09001 * 109.47119 * 60.00395 * 1 2 3 34 34 H 1.07998 * 120.08684 * 0.02562 * 4 3 2 35 35 H 1.08005 * 120.00129 * 311.46078 * 6 5 4 36 36 H 1.08000 * 120.00089 * 169.11755 * 7 6 5 37 37 H 1.09001 * 109.62851 * 9.12514 * 11 10 8 38 38 H 1.08998 * 109.63089 * 248.54720 * 11 10 8 39 39 H 1.09004 * 109.49450 * 173.78825 * 12 11 10 40 40 H 1.09000 * 109.49353 * 293.86711 * 12 11 10 41 41 H 1.09003 * 109.46761 * 56.03744 * 14 13 12 42 42 H 1.08993 * 109.47489 * 176.04137 * 14 13 12 43 43 H 1.09004 * 109.46734 * 296.04459 * 14 13 12 44 44 H 1.09001 * 109.49063 * 303.14366 * 15 13 12 45 45 H 1.09000 * 109.50991 * 183.07882 * 15 13 12 46 46 H 1.09000 * 109.47230 * 68.78741 * 18 16 10 47 47 H 1.08999 * 109.46844 * 188.79073 * 18 16 10 48 48 H 1.09005 * 109.46833 * 308.78534 * 18 16 10 49 49 H 1.08003 * 119.99481 * 180.25422 * 19 5 4 50 50 H 1.08000 * 119.91744 * 180.02562 * 20 19 5 51 51 H 0.96996 * 119.99858 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 0.0054 5 6 1.9331 3.6149 -0.0014 6 6 1.1378 4.8507 -0.0024 7 6 1.4269 5.8403 0.8695 8 6 2.3645 5.5983 1.9656 9 8 2.7855 4.4746 2.1696 10 7 2.7624 6.6196 2.7499 11 6 2.3835 8.0054 2.4349 12 6 1.7747 8.6409 3.6893 13 7 2.7098 8.4928 4.8125 14 6 2.2415 9.2371 5.9892 15 6 2.9310 7.0775 5.1385 16 6 3.5873 6.3780 3.9435 17 1 4.5869 6.7830 3.7858 18 6 3.6782 4.8741 4.2095 19 6 3.3319 3.6803 -0.0014 20 6 4.0751 2.5218 -0.0005 21 6 3.4404 1.2845 0.0000 22 8 4.1775 0.1462 0.0003 23 6 5.5110 0.2808 0.1412 24 1 5.9374 1.2524 0.3423 25 6 6.3358 -0.8286 0.0278 26 7 5.8166 -2.0119 -0.2167 27 14 8.1843 -0.6419 0.2223 28 1 8.5125 0.7813 0.4908 29 1 8.6497 -1.4793 1.3571 30 1 8.8600 -1.0794 -1.0255 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.2156 2.3144 0.0100 35 1 0.3221 4.9674 -0.7006 36 1 0.9660 6.8105 0.7575 37 1 1.6496 8.0102 1.6290 38 1 3.2674 8.5669 2.1321 39 1 1.5895 9.6996 3.5075 40 1 0.8354 8.1430 3.9299 41 1 1.2365 8.9067 6.2517 42 1 2.9146 9.0538 6.8266 43 1 2.2259 10.3031 5.7622 44 1 1.9756 6.6015 5.3590 45 1 3.5843 7.0021 6.0078 46 1 4.2685 4.4013 3.4246 47 1 4.1547 4.7041 5.1750 48 1 2.6760 4.4455 4.2185 49 1 3.8275 4.6399 -0.0024 50 1 5.1538 2.5739 -0.0001 51 1 6.3934 -2.7877 -0.2956 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098055871.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:36 Heat of formation + Delta-G solvation = -6.547238 kcal Electronic energy + Delta-G solvation = -33197.607921 eV Core-core repulsion = 28872.532429 eV Total energy + Delta-G solvation = -4325.075492 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.50950 -39.43727 -38.16226 -37.41345 -36.15728 -34.55444 -33.58669 -32.45015 -31.89990 -29.42054 -29.20023 -28.28252 -27.08278 -26.40347 -25.31709 -24.44101 -23.76770 -22.12758 -21.48236 -21.38069 -20.06228 -18.42229 -17.94693 -17.52130 -16.72568 -16.16848 -16.00677 -15.63660 -15.27980 -15.12594 -15.06379 -14.97377 -14.94496 -14.50867 -14.06578 -13.80855 -13.42704 -13.37800 -13.29172 -13.16334 -12.83641 -12.75521 -12.54057 -12.31741 -12.21282 -12.03901 -11.70932 -11.63716 -11.55785 -11.34528 -11.31783 -11.18713 -11.08289 -11.02997 -10.82500 -10.51207 -10.36934 -10.26805 -9.42953 -9.15020 -8.91011 -8.81769 -8.55292 -8.41019 -7.69467 -6.61577 -6.39333 -3.91813 1.25605 2.35880 2.64803 3.01747 3.17597 3.18178 3.24150 3.51879 3.66045 4.01346 4.14023 4.53724 4.63572 4.65176 4.68714 4.87923 4.94389 5.01013 5.10872 5.17139 5.18830 5.20948 5.23714 5.29709 5.38162 5.49714 5.51322 5.54664 5.57196 5.61000 5.63931 5.72024 5.77476 5.88081 5.89029 5.92875 6.20872 6.28841 6.33392 6.43259 6.50556 6.57761 6.63501 6.67602 6.75766 6.84453 7.07116 7.19904 7.32536 7.47785 7.61207 7.74607 8.02803 8.30586 8.56219 9.05455 9.78729 10.78104 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.010699 B = 0.002850 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.435095 B = 9823.812761 C =11527.317147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.042 3.958 4 C -0.137 4.137 5 C -0.149 4.149 6 C 0.022 3.978 7 C -0.261 4.261 8 C 0.542 3.458 9 O -0.499 6.499 10 N -0.618 5.618 11 C 0.113 3.887 12 C 0.039 3.961 13 N -0.544 5.544 14 C 0.026 3.974 15 C 0.044 3.956 16 C 0.153 3.847 17 H 0.074 0.926 18 C -0.139 4.139 19 C -0.019 4.019 20 C -0.217 4.217 21 C 0.150 3.850 22 O -0.160 6.160 23 C -0.386 4.386 24 H 0.093 0.907 25 C 0.039 3.961 26 N -0.855 5.855 27 Si 0.940 3.060 28 H -0.266 1.266 29 H -0.276 1.276 30 H -0.276 1.276 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.025 0.975 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.038 0.962 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.042 0.958 48 H 0.063 0.937 49 H 0.099 0.901 50 H 0.131 0.869 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.076 21.625 6.654 24.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.219 6.219 3 C -0.003 4.003 4 C -0.156 4.156 5 C -0.150 4.150 6 C 0.002 3.998 7 C -0.281 4.281 8 C 0.333 3.667 9 O -0.375 6.375 10 N -0.354 5.354 11 C -0.011 4.011 12 C -0.089 4.089 13 N -0.268 5.268 14 C -0.123 4.123 15 C -0.084 4.084 16 C 0.049 3.951 17 H 0.092 0.908 18 C -0.196 4.196 19 C -0.037 4.037 20 C -0.237 4.237 21 C 0.095 3.905 22 O -0.062 6.062 23 C -0.462 4.462 24 H 0.110 0.890 25 C -0.166 4.166 26 N -0.489 5.489 27 Si 0.765 3.235 28 H -0.190 1.190 29 H -0.201 1.201 30 H -0.202 1.202 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.056 0.944 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.117 0.883 50 H 0.148 0.852 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.269 20.504 6.580 23.444 hybrid contribution -0.255 0.332 0.503 0.654 sum -9.524 20.836 7.083 23.979 Atomic orbital electron populations 1.22842 0.80724 1.02679 1.00054 1.86224 1.19105 1.26538 1.90062 1.17930 0.89363 0.84308 1.08673 1.20626 0.97894 0.90936 1.06195 1.18005 0.92831 0.91139 1.13049 1.22310 0.93354 0.91493 0.92608 1.22814 1.05926 1.00319 0.99090 1.18430 0.81130 0.84345 0.82783 1.91040 1.54594 1.22060 1.69787 1.48187 1.53549 1.06526 1.27167 1.21814 1.00505 0.82229 0.96519 1.22524 0.93705 1.01046 0.91667 1.61929 1.46704 1.11337 1.06868 1.22364 0.98472 0.98702 0.92721 1.22635 1.00160 0.87265 0.98366 1.21245 0.93712 0.96879 0.83217 0.90807 1.22166 1.03772 0.92567 1.01128 1.20469 0.91865 0.96518 0.94866 1.20720 1.00260 0.90860 1.11830 1.18812 0.88241 0.87589 0.95867 1.84008 1.19593 1.25568 1.77064 1.21446 0.78914 0.96473 1.49353 0.88961 1.25319 1.00340 0.94357 0.96600 1.70062 1.35904 0.98818 1.44138 0.85656 0.80718 0.78894 0.78239 1.18996 1.20133 1.20157 0.89279 0.93807 0.93757 0.86679 0.86131 0.86058 0.89023 0.90878 0.89729 0.94368 0.95689 0.91278 0.91242 0.94380 0.89748 0.89334 0.93951 0.91809 0.88299 0.85173 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.81 101.05 0.99 1.52 16 2 O -0.31 -7.01 10.28 -34.21 -0.35 -7.36 16 3 C 0.04 0.98 6.70 -39.13 -0.26 0.72 16 4 C -0.14 -2.66 8.77 -38.99 -0.34 -3.00 16 5 C -0.15 -2.73 4.34 -105.04 -0.46 -3.18 16 6 C 0.02 0.30 9.77 -37.19 -0.36 -0.06 16 7 C -0.26 -3.27 9.23 -37.50 -0.35 -3.61 16 8 C 0.54 8.04 6.58 -13.04 -0.09 7.95 16 9 O -0.50 -9.31 8.22 5.17 0.04 -9.27 16 10 N -0.62 -7.54 3.01 -166.61 -0.50 -8.05 16 11 C 0.11 0.99 6.52 -3.60 -0.02 0.96 16 12 C 0.04 0.31 5.62 -3.70 -0.02 0.29 16 13 N -0.54 -4.86 4.88 -242.61 -1.18 -6.04 16 14 C 0.03 0.18 9.62 60.07 0.58 0.75 16 15 C 0.04 0.45 4.92 -3.70 -0.02 0.43 16 16 C 0.15 1.85 3.64 -67.49 -0.25 1.61 16 17 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.14 -1.99 7.65 37.16 0.28 -1.71 16 19 C -0.02 -0.37 6.76 -39.13 -0.26 -0.64 16 20 C -0.22 -5.06 9.10 -39.50 -0.36 -5.42 16 21 C 0.15 3.90 6.67 -38.76 -0.26 3.65 16 22 O -0.16 -4.83 9.52 -13.95 -0.13 -4.97 16 23 C -0.39 -11.19 9.42 30.91 0.29 -10.90 16 24 H 0.09 2.50 5.31 -52.49 -0.28 2.22 16 25 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 26 N -0.86 -25.83 13.67 55.48 0.76 -25.07 16 27 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 16 28 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 29 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 30 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 33 H 0.04 0.62 7.67 -51.93 -0.40 0.22 16 34 H 0.12 1.86 6.28 -52.49 -0.33 1.53 16 35 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 36 H 0.12 1.09 5.95 -52.49 -0.31 0.78 16 37 H 0.09 0.65 5.39 -51.93 -0.28 0.37 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.51 8.11 -51.93 -0.42 0.08 16 40 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.07 0.44 8.00 -51.93 -0.42 0.02 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.76 8.01 -51.93 -0.42 0.34 16 46 H 0.09 1.54 6.62 -51.93 -0.34 1.20 16 47 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 1.03 6.95 -51.93 -0.36 0.67 16 49 H 0.10 1.83 7.45 -52.48 -0.39 1.44 16 50 H 0.13 3.03 5.72 -52.49 -0.30 2.73 16 51 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 401.66 15.07 6.05 6.05 Total: -1.00 -34.98 401.66 -8.92 -43.90 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.58 Total: 4.38 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -1.00 Total: -9.64 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: -0.93 Total: -39.16 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.44 Total: -21.60 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.98 -8.92 -43.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098055871.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.350 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds