Wall clock time and date at job start Tue Mar 31 2020 06:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35954 * 116.99792 * 2 1 4 4 C 1.38078 * 120.00002 * 0.25807 * 3 2 1 5 5 C 1.39984 * 119.83919 * 180.31741 * 4 3 2 6 6 C 1.46960 * 120.08242 * 179.69599 * 5 4 3 7 7 C 1.35024 * 120.00002 * 131.45291 * 6 5 4 8 8 C 1.46255 * 119.99843 * 349.12537 * 7 6 5 9 9 O 1.21727 * 120.00346 * 352.97204 * 8 7 6 10 10 N 1.34777 * 120.00070 * 172.97221 * 8 7 6 11 11 C 1.47080 * 120.88151 * 353.31871 * 10 8 7 12 12 C 1.53237 * 108.52246 * 128.83370 * 11 10 8 13 13 N 1.46895 * 109.34080 * 53.83337 * 12 11 10 14 14 C 1.46902 * 111.00465 * 172.74628 * 13 12 11 15 15 C 1.46906 * 111.26628 * 296.89319 * 13 12 11 16 16 C 1.47085 * 120.88322 * 173.33553 * 10 8 7 17 17 H 1.09000 * 109.62395 * 111.45721 * 16 10 8 18 18 C 1.52997 * 109.62795 * 351.07346 * 16 10 8 19 19 C 1.40035 * 119.83477 * 359.42669 * 5 4 3 20 20 C 1.37638 * 120.00293 * 0.27298 * 19 5 4 21 21 C 1.39061 * 120.16376 * 0.02562 * 20 19 5 22 22 O 1.35608 * 119.91968 * 179.97438 * 21 20 19 23 23 C 1.34767 * 117.00282 * 6.73903 * 22 21 20 24 24 H 1.07993 * 119.99951 * 5.89548 * 23 22 21 25 25 C 1.38707 * 119.99979 * 185.90044 * 23 22 21 26 26 N 1.31520 * 120.00244 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99837 * 179.97438 * 25 23 22 28 28 H 1.48495 * 109.47007 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.46777 * 119.99747 * 27 25 23 30 30 H 1.48494 * 109.46990 * 239.99495 * 27 25 23 31 31 H 1.08999 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47209 * 299.99853 * 1 2 3 33 33 H 1.09001 * 109.47119 * 60.00395 * 1 2 3 34 34 H 1.07998 * 120.08684 * 0.02562 * 4 3 2 35 35 H 1.08005 * 120.00129 * 311.46078 * 6 5 4 36 36 H 1.08000 * 120.00089 * 169.11755 * 7 6 5 37 37 H 1.09001 * 109.62851 * 9.12514 * 11 10 8 38 38 H 1.08998 * 109.63089 * 248.54720 * 11 10 8 39 39 H 1.09004 * 109.49450 * 173.78825 * 12 11 10 40 40 H 1.09000 * 109.49353 * 293.86711 * 12 11 10 41 41 H 1.09003 * 109.46761 * 56.03744 * 14 13 12 42 42 H 1.08993 * 109.47489 * 176.04137 * 14 13 12 43 43 H 1.09004 * 109.46734 * 296.04459 * 14 13 12 44 44 H 1.09001 * 109.49063 * 303.14366 * 15 13 12 45 45 H 1.09000 * 109.50991 * 183.07882 * 15 13 12 46 46 H 1.09000 * 109.47230 * 68.78741 * 18 16 10 47 47 H 1.08999 * 109.46844 * 188.79073 * 18 16 10 48 48 H 1.09005 * 109.46833 * 308.78534 * 18 16 10 49 49 H 1.08003 * 119.99481 * 180.25422 * 19 5 4 50 50 H 1.08000 * 119.91744 * 180.02562 * 20 19 5 51 51 H 0.96996 * 119.99858 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 0.0054 5 6 1.9331 3.6149 -0.0014 6 6 1.1378 4.8507 -0.0024 7 6 1.4269 5.8403 0.8695 8 6 2.3645 5.5983 1.9656 9 8 2.7855 4.4746 2.1696 10 7 2.7624 6.6196 2.7499 11 6 2.3835 8.0054 2.4349 12 6 1.7747 8.6409 3.6893 13 7 2.7098 8.4928 4.8125 14 6 2.2415 9.2371 5.9892 15 6 2.9310 7.0775 5.1385 16 6 3.5873 6.3780 3.9435 17 1 4.5869 6.7830 3.7858 18 6 3.6782 4.8741 4.2095 19 6 3.3319 3.6803 -0.0014 20 6 4.0751 2.5218 -0.0005 21 6 3.4404 1.2845 0.0000 22 8 4.1775 0.1462 0.0003 23 6 5.5110 0.2808 0.1412 24 1 5.9374 1.2524 0.3423 25 6 6.3358 -0.8286 0.0278 26 7 5.8166 -2.0119 -0.2167 27 14 8.1843 -0.6419 0.2223 28 1 8.5125 0.7813 0.4908 29 1 8.6497 -1.4793 1.3571 30 1 8.8600 -1.0794 -1.0255 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.2156 2.3144 0.0100 35 1 0.3221 4.9674 -0.7006 36 1 0.9660 6.8105 0.7575 37 1 1.6496 8.0102 1.6290 38 1 3.2674 8.5669 2.1321 39 1 1.5895 9.6996 3.5075 40 1 0.8354 8.1430 3.9299 41 1 1.2365 8.9067 6.2517 42 1 2.9146 9.0538 6.8266 43 1 2.2259 10.3031 5.7622 44 1 1.9756 6.6015 5.3590 45 1 3.5843 7.0021 6.0078 46 1 4.2685 4.4013 3.4246 47 1 4.1547 4.7041 5.1750 48 1 2.6760 4.4455 4.2185 49 1 3.8275 4.6399 -0.0024 50 1 5.1538 2.5739 -0.0001 51 1 6.3934 -2.7877 -0.2956 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098055871.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:35 Heat of formation + Delta-G solvation = -31.422735 kcal Electronic energy + Delta-G solvation = -33198.686604 eV Core-core repulsion = 28872.532429 eV Total energy + Delta-G solvation = -4326.154175 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.61917 -41.05670 -39.22772 -39.16903 -37.67000 -35.53700 -34.80797 -34.22048 -33.23830 -31.09071 -30.27539 -29.54035 -27.96850 -27.81695 -27.31215 -25.26002 -24.92075 -23.25692 -23.13817 -22.54942 -21.18361 -19.87190 -19.72720 -18.90125 -18.06502 -17.66551 -17.09971 -16.85179 -16.60876 -16.42921 -16.30661 -16.07805 -15.83215 -15.69970 -15.50049 -15.38102 -15.18827 -15.01696 -14.44196 -14.35106 -13.99083 -13.86502 -13.66304 -13.47953 -13.43653 -13.23388 -12.98818 -12.92351 -12.77429 -12.72280 -12.53105 -12.46408 -12.29359 -12.15983 -12.10119 -11.99927 -11.92678 -11.69586 -11.36870 -10.85220 -10.33355 -9.97302 -9.69807 -9.39464 -9.20579 -8.45561 -8.34589 -6.09212 0.00628 0.66214 1.06720 1.32074 1.42568 1.51468 2.07443 2.17522 2.46370 2.62579 2.85234 2.91403 3.18862 3.46523 3.66856 3.82885 3.91106 3.96145 4.07924 4.12739 4.20661 4.26920 4.31981 4.32711 4.36262 4.43204 4.50942 4.55341 4.58986 4.62424 4.67783 4.69892 4.72343 4.75555 4.80852 4.84225 4.99198 5.01825 5.03352 5.10681 5.15920 5.17831 5.29751 5.41279 5.52042 5.60255 5.69654 5.82314 5.97282 5.98171 6.03786 6.08777 6.59804 6.69537 6.98458 7.43537 7.83484 8.78261 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.010699 B = 0.002850 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.435095 B = 9823.812761 C =11527.317147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.348 6.348 3 C 0.030 3.970 4 C -0.137 4.137 5 C -0.111 4.111 6 C 0.001 3.999 7 C -0.225 4.225 8 C 0.524 3.476 9 O -0.549 6.549 10 N -0.614 5.614 11 C 0.107 3.893 12 C 0.041 3.959 13 N -0.553 5.553 14 C 0.026 3.974 15 C 0.055 3.945 16 C 0.153 3.847 17 H 0.073 0.927 18 C -0.126 4.126 19 C -0.028 4.028 20 C -0.218 4.218 21 C 0.093 3.907 22 O -0.221 6.221 23 C -0.410 4.410 24 H 0.095 0.905 25 C -0.024 4.024 26 N -0.918 5.918 27 Si 1.019 2.981 28 H -0.254 1.254 29 H -0.267 1.267 30 H -0.264 1.264 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.157 0.843 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.034 0.966 41 H 0.025 0.975 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.027 0.973 45 H 0.093 0.907 46 H 0.050 0.950 47 H 0.055 0.945 48 H 0.041 0.959 49 H 0.116 0.884 50 H 0.115 0.885 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.544 27.092 6.986 30.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.263 6.263 3 C -0.014 4.014 4 C -0.156 4.156 5 C -0.112 4.112 6 C -0.019 4.019 7 C -0.245 4.245 8 C 0.316 3.684 9 O -0.428 6.428 10 N -0.348 5.348 11 C -0.015 4.015 12 C -0.088 4.088 13 N -0.278 5.278 14 C -0.122 4.122 15 C -0.074 4.074 16 C 0.049 3.951 17 H 0.091 0.909 18 C -0.184 4.184 19 C -0.046 4.046 20 C -0.237 4.237 21 C 0.042 3.958 22 O -0.128 6.128 23 C -0.486 4.486 24 H 0.112 0.888 25 C -0.221 4.221 26 N -0.557 5.557 27 Si 0.838 3.162 28 H -0.178 1.178 29 H -0.192 1.192 30 H -0.189 1.189 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.174 0.826 35 H 0.188 0.812 36 H 0.190 0.810 37 H 0.135 0.865 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.045 0.955 45 H 0.112 0.888 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.060 0.940 49 H 0.133 0.867 50 H 0.133 0.867 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.799 26.089 6.925 29.459 hybrid contribution 0.134 -0.884 0.530 1.039 sum -11.664 25.205 7.455 28.756 Atomic orbital electron populations 1.23227 0.77280 1.04743 1.01914 1.86165 1.22866 1.27115 1.90195 1.18302 0.88885 0.85858 1.08399 1.21092 0.99714 0.89837 1.04958 1.18627 0.92581 0.93200 1.06743 1.22559 0.94793 0.89185 0.95328 1.23232 1.03058 1.01663 0.96577 1.19073 0.81449 0.84192 0.83665 1.91068 1.56476 1.24196 1.71088 1.48301 1.52422 1.07762 1.26361 1.22139 1.01584 0.79895 0.97876 1.22588 0.92987 1.02528 0.90683 1.61953 1.47573 1.10194 1.08047 1.22412 0.98467 0.99213 0.92063 1.22457 0.99527 0.88078 0.97379 1.21193 0.94229 0.95180 0.84479 0.90861 1.21935 1.01695 0.94285 1.00507 1.20632 0.93003 0.95755 0.95211 1.20786 0.99953 0.91526 1.11480 1.19440 0.89784 0.87676 0.98871 1.83962 1.20003 1.27664 1.81176 1.21828 0.79477 0.97033 1.50296 0.88791 1.26614 1.05870 0.93618 0.96029 1.70210 1.38009 0.99902 1.47542 0.84536 0.73494 0.79425 0.78723 1.17752 1.19197 1.18862 0.87445 0.92158 0.91276 0.82603 0.81158 0.80976 0.86515 0.90214 0.87036 0.94787 0.95620 0.91014 0.89695 0.95453 0.88847 0.93056 0.92590 0.94036 0.86651 0.86720 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 9.81 113.37 1.11 1.82 16 2 O -0.35 -16.75 10.28 -79.05 -0.81 -17.56 16 3 C 0.03 1.47 6.70 22.56 0.15 1.62 16 4 C -0.14 -5.12 8.77 22.66 0.20 -4.92 16 5 C -0.11 -3.80 4.34 -20.13 -0.09 -3.89 16 6 C 0.00 0.01 9.77 23.82 0.23 0.25 16 7 C -0.23 -4.37 9.23 23.62 0.22 -4.15 16 8 C 0.52 14.13 6.58 86.33 0.57 14.70 16 9 O -0.55 -20.36 8.22 -4.43 -0.04 -20.40 16 10 N -0.61 -13.22 3.01 -799.24 -2.41 -15.62 16 11 C 0.11 1.35 6.52 86.35 0.56 1.91 16 12 C 0.04 0.45 5.62 86.38 0.49 0.94 16 13 N -0.55 -7.94 4.88 -921.47 -4.50 -12.44 16 14 C 0.03 0.27 9.62 127.69 1.23 1.50 16 15 C 0.05 0.98 4.92 86.38 0.42 1.40 16 16 C 0.15 3.50 3.64 44.96 0.16 3.67 16 17 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 18 C -0.13 -3.73 7.65 71.98 0.55 -3.18 16 19 C -0.03 -1.11 6.76 22.56 0.15 -0.95 16 20 C -0.22 -10.86 9.10 22.33 0.20 -10.66 16 21 C 0.09 5.24 6.67 22.80 0.15 5.39 16 22 O -0.22 -14.75 9.52 -6.55 -0.06 -14.81 16 23 C -0.41 -26.04 9.42 67.93 0.64 -25.40 16 24 H 0.09 5.60 5.31 -2.91 -0.02 5.58 16 25 C -0.02 -1.47 5.49 84.85 0.47 -1.00 16 26 N -0.92 -60.01 13.67 21.62 0.30 -59.71 16 27 Si 1.02 46.01 29.55 68.60 2.03 48.04 16 28 H -0.25 -10.73 7.11 99.48 0.71 -10.03 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 30 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 31 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.06 1.65 7.65 -2.39 -0.02 1.63 16 33 H 0.07 1.78 7.67 -2.39 -0.02 1.76 16 34 H 0.16 4.45 6.28 -2.91 -0.02 4.43 16 35 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.17 1.68 5.95 -2.91 -0.02 1.66 16 37 H 0.12 0.86 5.39 -2.39 -0.01 0.84 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 0.70 8.11 -2.38 -0.02 0.68 16 40 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.07 0.70 8.00 -2.39 -0.02 0.68 16 43 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.09 1.49 8.01 -2.39 -0.02 1.47 16 46 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 47 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.04 1.38 6.95 -2.38 -0.02 1.37 16 49 H 0.12 4.18 7.45 -2.91 -0.02 4.16 16 50 H 0.12 5.88 5.72 -2.91 -0.02 5.86 16 51 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -89.34 401.66 2.87 -86.46 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.94 Total: 27.02 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 7.42 Total: -20.97 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -6.61 Total: -87.77 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.91 Total: -52.78 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -89.34 2.87 -86.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098055871.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.041 kcal (2) G-P(sol) polarization free energy of solvation -89.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds