Wall clock time and date at job start Tue Mar 31 2020 06:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35957 * 117.00324 * 2 1 4 4 C 1.38072 * 119.99732 * 359.97438 * 3 2 1 5 5 C 1.39984 * 119.83972 * 180.02562 * 4 3 2 6 6 C 1.46960 * 120.07818 * 180.02562 * 5 4 3 7 7 C 1.35031 * 119.99855 * 138.33048 * 6 5 4 8 8 C 1.46257 * 119.99680 * 345.69247 * 7 6 5 9 9 O 1.21718 * 120.00152 * 352.70794 * 8 7 6 10 10 N 1.34781 * 119.99542 * 172.70936 * 8 7 6 11 11 C 1.47077 * 120.88071 * 6.52210 * 10 8 7 12 12 C 1.53243 * 108.52029 * 231.16440 * 11 10 8 13 13 N 1.46897 * 109.34079 * 306.17207 * 12 11 10 14 14 C 1.46897 * 111.00322 * 187.25482 * 13 12 11 15 15 C 1.46899 * 111.27064 * 63.10474 * 13 12 11 16 16 C 1.47077 * 120.87932 * 186.50322 * 10 8 7 17 17 H 1.08997 * 109.78770 * 248.63920 * 16 10 8 18 18 C 1.52998 * 109.62948 * 9.12586 * 16 10 8 19 19 C 1.40037 * 119.83894 * 0.27338 * 5 4 3 20 20 C 1.37645 * 119.99941 * 359.46930 * 19 5 4 21 21 C 1.39064 * 120.16194 * 0.51515 * 20 19 5 22 22 O 1.35615 * 119.92058 * 179.74368 * 21 20 19 23 23 C 1.34755 * 116.99858 * 6.63286 * 22 21 20 24 24 H 1.07993 * 120.00540 * 5.84038 * 23 22 21 25 25 C 1.38711 * 119.99938 * 185.83619 * 23 22 21 26 26 N 1.31523 * 119.99610 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00155 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47754 * 89.99949 * 27 25 23 29 29 H 1.48501 * 109.47187 * 209.99979 * 27 25 23 30 30 H 1.48499 * 109.47237 * 329.99484 * 27 25 23 31 31 H 1.08996 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47140 * 300.00314 * 1 2 3 33 33 H 1.08995 * 109.47071 * 60.00027 * 1 2 3 34 34 H 1.07997 * 120.08433 * 0.02562 * 4 3 2 35 35 H 1.07994 * 120.00341 * 318.32257 * 6 5 4 36 36 H 1.07999 * 119.99680 * 165.70145 * 7 6 5 37 37 H 1.08995 * 109.63415 * 350.87671 * 11 10 8 38 38 H 1.09001 * 109.62637 * 111.26388 * 11 10 8 39 39 H 1.09001 * 109.48875 * 186.21105 * 12 11 10 40 40 H 1.08996 * 109.49310 * 66.13365 * 12 11 10 41 41 H 1.08999 * 109.47067 * 295.70070 * 14 13 12 42 42 H 1.09009 * 109.46897 * 55.69362 * 14 13 12 43 43 H 1.08993 * 109.47530 * 175.69976 * 14 13 12 44 44 H 1.09000 * 109.48979 * 56.85452 * 15 13 12 45 45 H 1.08994 * 109.49382 * 176.90842 * 15 13 12 46 46 H 1.08999 * 109.47169 * 170.95525 * 18 16 10 47 47 H 1.09000 * 109.47333 * 290.95248 * 18 16 10 48 48 H 1.08998 * 109.47228 * 50.95400 * 18 16 10 49 49 H 1.07992 * 119.99751 * 179.70257 * 19 5 4 50 50 H 1.07996 * 119.92071 * 180.25141 * 20 19 5 51 51 H 0.97001 * 119.99346 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2943 2.3693 -0.0005 5 6 1.9333 3.6148 -0.0011 6 6 1.1381 4.8506 -0.0011 7 6 1.5076 5.8913 0.7760 8 6 2.4936 5.6965 1.8385 9 8 2.8822 4.5755 2.1102 10 7 2.9721 6.7585 2.5167 11 6 2.4149 8.1030 2.3046 12 6 3.5702 9.0703 2.0257 13 7 4.5595 8.9713 3.1071 14 6 5.5965 10.0024 2.9681 15 6 5.1553 7.6297 3.1632 16 6 4.0649 6.6034 3.4888 17 1 3.6890 6.7760 4.4972 18 6 4.6433 5.1904 3.3907 19 6 3.3321 3.6802 -0.0069 20 6 4.0753 2.5217 -0.0010 21 6 3.4406 1.2844 -0.0001 22 8 4.1776 0.1460 0.0005 23 6 5.5112 0.2808 0.1388 24 1 5.9381 1.2527 0.3370 25 6 6.3358 -0.8290 0.0267 26 7 5.8159 -2.0127 -0.2151 27 14 8.1844 -0.6424 0.2192 28 1 8.5542 -0.8212 1.6463 29 1 8.8738 -1.6689 -0.6031 30 1 8.5950 0.7112 -0.2327 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 0.2157 2.3144 -0.0005 35 1 0.2582 4.9266 -0.6226 36 1 1.0749 6.8673 0.6130 37 1 1.7361 8.0878 1.4520 38 1 1.8750 8.4205 3.1968 39 1 3.1871 10.0895 1.9753 40 1 4.0408 8.8109 1.0774 41 1 6.1585 9.8310 2.0500 42 1 5.1280 10.9859 2.9290 43 1 6.2723 9.9556 3.8219 44 1 5.6038 7.3904 2.1990 45 1 5.9221 7.6044 3.9374 46 1 5.5503 5.1266 3.9919 47 1 3.9115 4.4718 3.7598 48 1 4.8802 4.9661 2.3507 49 1 3.8277 4.6397 -0.0122 50 1 5.1540 2.5737 -0.0013 51 1 6.3925 -2.7888 -0.2931 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098055872.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:41 Heat of formation + Delta-G solvation = -5.514822 kcal Electronic energy + Delta-G solvation = -33369.002196 eV Core-core repulsion = 29043.971473 eV Total energy + Delta-G solvation = -4325.030723 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.51748 -39.45088 -38.15542 -37.44186 -36.15369 -34.54219 -33.58207 -32.46469 -31.90259 -29.44828 -29.19035 -28.27891 -27.05030 -26.39156 -25.33895 -24.42335 -23.79198 -22.10389 -21.47737 -21.38513 -20.08346 -18.36832 -17.97865 -17.56681 -16.70491 -16.29785 -15.80228 -15.60304 -15.26856 -15.20760 -15.07584 -14.96274 -14.95153 -14.52167 -14.10123 -13.83843 -13.44468 -13.37990 -13.23755 -13.07775 -12.89095 -12.69890 -12.47177 -12.30578 -12.23091 -12.04785 -11.71500 -11.64434 -11.57077 -11.34298 -11.31567 -11.15677 -11.10101 -11.00628 -10.82547 -10.55688 -10.41366 -10.29273 -9.45244 -9.12607 -8.87634 -8.80121 -8.57544 -8.40065 -7.70216 -6.62984 -6.42740 -3.94637 1.19407 2.35019 2.67753 3.03486 3.15298 3.16388 3.20467 3.56037 3.67339 3.98395 4.12732 4.55555 4.64244 4.66870 4.71404 4.91208 4.96778 5.03819 5.13687 5.15530 5.18183 5.22307 5.25190 5.31543 5.40289 5.53183 5.54140 5.55534 5.58242 5.62225 5.63700 5.74183 5.76498 5.84687 5.92230 5.92344 6.19589 6.31146 6.34116 6.44566 6.49585 6.59092 6.66167 6.68369 6.74552 6.86571 7.05047 7.18589 7.29320 7.46020 7.62504 7.72028 7.99378 8.28860 8.57229 9.01757 9.74694 10.74450 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.009463 B = 0.003193 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.040325 B = 8768.292046 C =11181.228551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.040 3.960 4 C -0.135 4.135 5 C -0.155 4.155 6 C 0.025 3.975 7 C -0.269 4.269 8 C 0.544 3.456 9 O -0.502 6.502 10 N -0.618 5.618 11 C 0.113 3.887 12 C 0.039 3.961 13 N -0.544 5.544 14 C 0.025 3.975 15 C 0.044 3.956 16 C 0.153 3.847 17 H 0.072 0.928 18 C -0.140 4.140 19 C -0.011 4.011 20 C -0.221 4.221 21 C 0.152 3.848 22 O -0.157 6.157 23 C -0.386 4.386 24 H 0.093 0.907 25 C 0.039 3.961 26 N -0.854 5.854 27 Si 0.941 3.059 28 H -0.272 1.272 29 H -0.277 1.277 30 H -0.267 1.267 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.025 0.975 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.084 0.916 48 H 0.067 0.933 49 H 0.097 0.903 50 H 0.130 0.870 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.694 22.129 3.546 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.219 6.219 3 C -0.005 4.005 4 C -0.154 4.154 5 C -0.156 4.156 6 C 0.005 3.995 7 C -0.290 4.290 8 C 0.335 3.665 9 O -0.378 6.378 10 N -0.355 5.355 11 C -0.010 4.010 12 C -0.090 4.090 13 N -0.269 5.269 14 C -0.123 4.123 15 C -0.085 4.085 16 C 0.050 3.950 17 H 0.090 0.910 18 C -0.197 4.197 19 C -0.030 4.030 20 C -0.241 4.241 21 C 0.097 3.903 22 O -0.059 6.059 23 C -0.462 4.462 24 H 0.110 0.890 25 C -0.166 4.166 26 N -0.487 5.487 27 Si 0.765 3.235 28 H -0.198 1.198 29 H -0.202 1.202 30 H -0.192 1.192 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.103 0.897 46 H 0.061 0.939 47 H 0.103 0.897 48 H 0.086 0.914 49 H 0.115 0.885 50 H 0.148 0.852 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.586 20.886 4.082 22.277 hybrid contribution 1.072 0.557 -0.614 1.355 sum -5.515 21.442 3.468 22.410 Atomic orbital electron populations 1.22847 0.80670 1.02715 1.00090 1.86221 1.19152 1.26500 1.90070 1.17936 0.89349 0.84362 1.08810 1.20680 0.97975 0.90985 1.05787 1.18017 0.92797 0.91204 1.13561 1.22287 0.94021 0.91476 0.91723 1.22757 1.05802 0.99636 1.00832 1.18418 0.81500 0.84104 0.82441 1.91026 1.57479 1.22789 1.66503 1.48185 1.36870 1.07586 1.42813 1.21807 0.95220 0.81720 1.02282 1.22517 0.93822 1.00020 0.92607 1.61938 1.15567 1.03988 1.45378 1.22361 0.94289 0.95118 1.00514 1.22635 0.96723 0.87928 1.01196 1.21234 0.86024 0.95725 0.92020 0.90988 1.22176 1.00230 0.94153 1.03155 1.20491 0.91951 0.96377 0.94134 1.20708 1.00235 0.90869 1.12241 1.18826 0.88249 0.87553 0.95672 1.84005 1.19587 1.25622 1.76731 1.21408 0.78882 0.96438 1.49521 0.88979 1.25327 1.00389 0.94340 0.96520 1.70056 1.36088 0.98807 1.43776 0.85716 0.80526 0.78543 0.78685 1.19787 1.20228 1.19152 0.89253 0.93746 0.93748 0.86564 0.86188 0.86039 0.89040 0.91053 0.89758 0.94245 0.95621 0.91321 0.91223 0.94173 0.89733 0.93870 0.89708 0.91369 0.88451 0.85217 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.51 16 2 O -0.31 -6.98 10.28 -34.22 -0.35 -7.33 16 3 C 0.04 0.93 6.70 -39.13 -0.26 0.67 16 4 C -0.13 -2.61 8.77 -38.99 -0.34 -2.95 16 5 C -0.15 -2.84 4.52 -105.04 -0.47 -3.31 16 6 C 0.02 0.34 9.80 -37.19 -0.36 -0.02 16 7 C -0.27 -3.43 9.19 -37.50 -0.34 -3.77 16 8 C 0.54 8.13 6.33 -13.04 -0.08 8.05 16 9 O -0.50 -9.40 8.21 5.17 0.04 -9.35 16 10 N -0.62 -7.61 3.01 -166.61 -0.50 -8.11 16 11 C 0.11 1.00 6.52 -3.60 -0.02 0.98 16 12 C 0.04 0.32 5.62 -3.70 -0.02 0.30 16 13 N -0.54 -5.02 4.88 -242.61 -1.18 -6.20 16 14 C 0.03 0.18 9.58 60.06 0.58 0.76 16 15 C 0.04 0.46 4.91 -3.70 -0.02 0.44 16 16 C 0.15 1.87 3.65 -67.49 -0.25 1.63 16 17 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 18 C -0.14 -2.04 7.64 37.16 0.28 -1.75 16 19 C -0.01 -0.22 6.71 -39.12 -0.26 -0.48 16 20 C -0.22 -5.12 9.10 -39.49 -0.36 -5.48 16 21 C 0.15 3.95 6.67 -38.76 -0.26 3.69 16 22 O -0.16 -4.73 9.52 -13.93 -0.13 -4.86 16 23 C -0.39 -11.14 9.42 30.91 0.29 -10.85 16 24 H 0.09 2.47 5.31 -52.49 -0.28 2.19 16 25 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 26 N -0.85 -25.62 13.67 55.48 0.76 -24.86 16 27 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 28 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 29 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 30 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 33 H 0.04 0.61 7.66 -51.93 -0.40 0.22 16 34 H 0.12 1.86 6.28 -52.49 -0.33 1.54 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.12 1.12 5.90 -52.49 -0.31 0.81 16 37 H 0.09 0.66 5.37 -51.93 -0.28 0.38 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.52 8.06 -51.93 -0.42 0.11 16 40 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.07 0.41 8.08 -51.92 -0.42 -0.01 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 46 H 0.04 0.55 8.13 -51.93 -0.42 0.13 16 47 H 0.08 1.45 6.63 -51.93 -0.34 1.11 16 48 H 0.07 1.15 6.94 -51.93 -0.36 0.79 16 49 H 0.10 1.81 7.03 -52.49 -0.37 1.44 16 50 H 0.13 3.00 5.71 -52.49 -0.30 2.70 16 51 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -34.68 401.10 -8.93 -43.60 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.56 Total: 4.76 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -1.01 Total: -9.58 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.93 Total: -39.18 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.44 Total: -21.55 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.68 -8.93 -43.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098055872.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.089 kcal (2) G-P(sol) polarization free energy of solvation -34.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds