Wall clock time and date at job start Tue Mar 31 2020 06:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35957 * 117.00324 * 2 1 4 4 C 1.38072 * 119.99732 * 359.97438 * 3 2 1 5 5 C 1.39984 * 119.83972 * 180.02562 * 4 3 2 6 6 C 1.46960 * 120.07818 * 180.02562 * 5 4 3 7 7 C 1.35031 * 119.99855 * 138.33048 * 6 5 4 8 8 C 1.46257 * 119.99680 * 345.69247 * 7 6 5 9 9 O 1.21718 * 120.00152 * 352.70794 * 8 7 6 10 10 N 1.34781 * 119.99542 * 172.70936 * 8 7 6 11 11 C 1.47077 * 120.88071 * 6.52210 * 10 8 7 12 12 C 1.53243 * 108.52029 * 231.16440 * 11 10 8 13 13 N 1.46897 * 109.34079 * 306.17207 * 12 11 10 14 14 C 1.46897 * 111.00322 * 187.25482 * 13 12 11 15 15 C 1.46899 * 111.27064 * 63.10474 * 13 12 11 16 16 C 1.47077 * 120.87932 * 186.50322 * 10 8 7 17 17 H 1.08997 * 109.78770 * 248.63920 * 16 10 8 18 18 C 1.52998 * 109.62948 * 9.12586 * 16 10 8 19 19 C 1.40037 * 119.83894 * 0.27338 * 5 4 3 20 20 C 1.37645 * 119.99941 * 359.46930 * 19 5 4 21 21 C 1.39064 * 120.16194 * 0.51515 * 20 19 5 22 22 O 1.35615 * 119.92058 * 179.74368 * 21 20 19 23 23 C 1.34755 * 116.99858 * 6.63286 * 22 21 20 24 24 H 1.07993 * 120.00540 * 5.84038 * 23 22 21 25 25 C 1.38711 * 119.99938 * 185.83619 * 23 22 21 26 26 N 1.31523 * 119.99610 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00155 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47754 * 89.99949 * 27 25 23 29 29 H 1.48501 * 109.47187 * 209.99979 * 27 25 23 30 30 H 1.48499 * 109.47237 * 329.99484 * 27 25 23 31 31 H 1.08996 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47140 * 300.00314 * 1 2 3 33 33 H 1.08995 * 109.47071 * 60.00027 * 1 2 3 34 34 H 1.07997 * 120.08433 * 0.02562 * 4 3 2 35 35 H 1.07994 * 120.00341 * 318.32257 * 6 5 4 36 36 H 1.07999 * 119.99680 * 165.70145 * 7 6 5 37 37 H 1.08995 * 109.63415 * 350.87671 * 11 10 8 38 38 H 1.09001 * 109.62637 * 111.26388 * 11 10 8 39 39 H 1.09001 * 109.48875 * 186.21105 * 12 11 10 40 40 H 1.08996 * 109.49310 * 66.13365 * 12 11 10 41 41 H 1.08999 * 109.47067 * 295.70070 * 14 13 12 42 42 H 1.09009 * 109.46897 * 55.69362 * 14 13 12 43 43 H 1.08993 * 109.47530 * 175.69976 * 14 13 12 44 44 H 1.09000 * 109.48979 * 56.85452 * 15 13 12 45 45 H 1.08994 * 109.49382 * 176.90842 * 15 13 12 46 46 H 1.08999 * 109.47169 * 170.95525 * 18 16 10 47 47 H 1.09000 * 109.47333 * 290.95248 * 18 16 10 48 48 H 1.08998 * 109.47228 * 50.95400 * 18 16 10 49 49 H 1.07992 * 119.99751 * 179.70257 * 19 5 4 50 50 H 1.07996 * 119.92071 * 180.25141 * 20 19 5 51 51 H 0.97001 * 119.99346 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2943 2.3693 -0.0005 5 6 1.9333 3.6148 -0.0011 6 6 1.1381 4.8506 -0.0011 7 6 1.5076 5.8913 0.7760 8 6 2.4936 5.6965 1.8385 9 8 2.8822 4.5755 2.1102 10 7 2.9721 6.7585 2.5167 11 6 2.4149 8.1030 2.3046 12 6 3.5702 9.0703 2.0257 13 7 4.5595 8.9713 3.1071 14 6 5.5965 10.0024 2.9681 15 6 5.1553 7.6297 3.1632 16 6 4.0649 6.6034 3.4888 17 1 3.6890 6.7760 4.4972 18 6 4.6433 5.1904 3.3907 19 6 3.3321 3.6802 -0.0069 20 6 4.0753 2.5217 -0.0010 21 6 3.4406 1.2844 -0.0001 22 8 4.1776 0.1460 0.0005 23 6 5.5112 0.2808 0.1388 24 1 5.9381 1.2527 0.3370 25 6 6.3358 -0.8290 0.0267 26 7 5.8159 -2.0127 -0.2151 27 14 8.1844 -0.6424 0.2192 28 1 8.5542 -0.8212 1.6463 29 1 8.8738 -1.6689 -0.6031 30 1 8.5950 0.7112 -0.2327 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 0.2157 2.3144 -0.0005 35 1 0.2582 4.9266 -0.6226 36 1 1.0749 6.8673 0.6130 37 1 1.7361 8.0878 1.4520 38 1 1.8750 8.4205 3.1968 39 1 3.1871 10.0895 1.9753 40 1 4.0408 8.8109 1.0774 41 1 6.1585 9.8310 2.0500 42 1 5.1280 10.9859 2.9290 43 1 6.2723 9.9556 3.8219 44 1 5.6038 7.3904 2.1990 45 1 5.9221 7.6044 3.9374 46 1 5.5503 5.1266 3.9919 47 1 3.9115 4.4718 3.7598 48 1 4.8802 4.9661 2.3507 49 1 3.8277 4.6397 -0.0122 50 1 5.1540 2.5737 -0.0013 51 1 6.3925 -2.7888 -0.2931 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098055872.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:40 Heat of formation + Delta-G solvation = -30.139434 kcal Electronic energy + Delta-G solvation = -33370.069999 eV Core-core repulsion = 29043.971473 eV Total energy + Delta-G solvation = -4326.098526 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.65378 -41.05880 -39.24161 -39.18090 -37.66683 -35.54261 -34.81491 -34.23862 -33.23564 -31.11789 -30.27911 -29.53896 -27.96858 -27.80141 -27.31736 -25.28288 -24.94288 -23.26114 -23.13539 -22.54844 -21.21303 -19.88632 -19.68825 -18.96466 -18.02569 -17.73413 -16.97847 -16.85989 -16.60681 -16.49522 -16.33488 -16.11300 -15.87117 -15.69957 -15.53189 -15.34210 -15.20262 -15.02203 -14.52818 -14.16559 -14.00163 -13.89482 -13.65890 -13.50742 -13.41373 -13.20836 -13.08106 -12.93154 -12.78105 -12.71658 -12.52584 -12.46140 -12.29164 -12.18689 -12.12225 -12.00702 -11.91856 -11.70504 -11.38790 -10.86779 -10.30035 -9.98323 -9.71122 -9.40470 -9.19915 -8.46972 -8.34855 -6.10557 -0.07417 0.65410 1.10398 1.30816 1.42861 1.49232 2.07805 2.16292 2.46793 2.62201 2.85056 2.90702 3.18477 3.44525 3.66655 3.83096 3.91300 3.96330 4.06575 4.13087 4.18884 4.24901 4.32167 4.32786 4.36432 4.44250 4.50153 4.55403 4.59889 4.61453 4.68126 4.70502 4.70928 4.74461 4.81363 4.84574 4.98963 5.00379 5.02665 5.09104 5.15021 5.17948 5.29951 5.39573 5.51691 5.59773 5.69305 5.82742 5.95852 5.96443 6.02872 6.06826 6.59654 6.69029 6.96812 7.43094 7.81274 8.76517 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.009463 B = 0.003193 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.040325 B = 8768.292046 C =11181.228551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.348 6.348 3 C 0.028 3.972 4 C -0.134 4.134 5 C -0.118 4.118 6 C 0.003 3.997 7 C -0.232 4.232 8 C 0.526 3.474 9 O -0.550 6.550 10 N -0.614 5.614 11 C 0.108 3.892 12 C 0.039 3.961 13 N -0.550 5.550 14 C 0.025 3.975 15 C 0.052 3.948 16 C 0.155 3.845 17 H 0.078 0.922 18 C -0.128 4.128 19 C -0.019 4.019 20 C -0.221 4.221 21 C 0.096 3.904 22 O -0.219 6.219 23 C -0.412 4.412 24 H 0.095 0.905 25 C -0.023 4.023 26 N -0.917 5.917 27 Si 1.018 2.982 28 H -0.263 1.263 29 H -0.266 1.266 30 H -0.254 1.254 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.174 0.826 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.030 0.970 41 H 0.021 0.979 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.024 0.976 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.039 0.961 49 H 0.111 0.889 50 H 0.114 0.886 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 27.722 3.722 29.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.263 6.263 3 C -0.017 4.017 4 C -0.153 4.153 5 C -0.119 4.119 6 C -0.017 4.017 7 C -0.252 4.252 8 C 0.318 3.682 9 O -0.430 6.430 10 N -0.349 5.349 11 C -0.014 4.014 12 C -0.090 4.090 13 N -0.275 5.275 14 C -0.122 4.122 15 C -0.077 4.077 16 C 0.051 3.949 17 H 0.096 0.904 18 C -0.186 4.186 19 C -0.038 4.038 20 C -0.241 4.241 21 C 0.046 3.954 22 O -0.126 6.126 23 C -0.488 4.488 24 H 0.112 0.888 25 C -0.220 4.220 26 N -0.555 5.555 27 Si 0.837 3.163 28 H -0.188 1.188 29 H -0.190 1.190 30 H -0.177 1.177 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.176 0.824 35 H 0.188 0.812 36 H 0.191 0.809 37 H 0.134 0.866 38 H 0.101 0.899 39 H 0.131 0.869 40 H 0.048 0.952 41 H 0.040 0.960 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.042 0.958 45 H 0.112 0.888 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.129 0.871 50 H 0.132 0.868 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.060 26.600 4.266 28.423 hybrid contribution 1.430 -0.658 -0.535 1.663 sum -7.630 25.942 3.730 27.297 Atomic orbital electron populations 1.23236 0.77227 1.04778 1.01975 1.86165 1.22909 1.27045 1.90202 1.18308 0.88869 0.85922 1.08571 1.21150 0.99847 0.89805 1.04476 1.18645 0.92539 0.93287 1.07440 1.22559 0.95573 0.89135 0.94389 1.23214 1.02700 1.01216 0.98080 1.19055 0.81882 0.84004 0.83241 1.91053 1.59284 1.24871 1.67794 1.48302 1.36198 1.08678 1.41696 1.22139 0.95819 0.79531 1.03916 1.22602 0.93240 1.01388 0.91721 1.61974 1.16211 1.03288 1.45987 1.22417 0.94060 0.95241 1.00509 1.22476 0.96087 0.88485 1.00626 1.21176 0.86729 0.94479 0.92486 0.90411 1.21960 1.00022 0.95420 1.01202 1.20618 0.93054 0.95528 0.94598 1.20765 0.99910 0.91522 1.11873 1.19451 0.89802 0.87636 0.98557 1.83962 1.19986 1.27653 1.80974 1.21795 0.79458 0.97017 1.50559 0.88787 1.26612 1.05871 0.93597 0.95936 1.70206 1.38135 0.99870 1.47311 0.84610 0.73400 0.79207 0.79078 1.18835 1.19050 1.17745 0.87440 0.92051 0.91258 0.82360 0.81171 0.80939 0.86586 0.89856 0.86908 0.95164 0.96016 0.89524 0.90862 0.95794 0.88839 0.92722 0.92758 0.94191 0.87072 0.86788 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.81 113.37 1.11 1.80 16 2 O -0.35 -16.64 10.28 -79.10 -0.81 -17.45 16 3 C 0.03 1.35 6.70 22.56 0.15 1.50 16 4 C -0.13 -4.97 8.77 22.65 0.20 -4.78 16 5 C -0.12 -4.08 4.52 -20.13 -0.09 -4.17 16 6 C 0.00 0.06 9.80 23.82 0.23 0.29 16 7 C -0.23 -4.57 9.19 23.62 0.22 -4.35 16 8 C 0.53 14.25 6.33 86.33 0.55 14.80 16 9 O -0.55 -20.43 8.21 -4.41 -0.04 -20.47 16 10 N -0.61 -13.26 3.01 -799.25 -2.41 -15.66 16 11 C 0.11 1.35 6.52 86.35 0.56 1.92 16 12 C 0.04 0.46 5.62 86.39 0.49 0.95 16 13 N -0.55 -8.28 4.88 -921.48 -4.50 -12.78 16 14 C 0.03 0.29 9.58 127.69 1.22 1.51 16 15 C 0.05 1.00 4.91 86.39 0.42 1.42 16 16 C 0.15 3.57 3.65 44.96 0.16 3.73 16 17 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 18 C -0.13 -3.87 7.64 71.98 0.55 -3.32 16 19 C -0.02 -0.78 6.71 22.57 0.15 -0.63 16 20 C -0.22 -11.00 9.10 22.33 0.20 -10.80 16 21 C 0.10 5.41 6.67 22.80 0.15 5.57 16 22 O -0.22 -14.55 9.52 -6.53 -0.06 -14.61 16 23 C -0.41 -26.07 9.42 67.93 0.64 -25.43 16 24 H 0.09 5.57 5.31 -2.91 -0.02 5.55 16 25 C -0.02 -1.37 5.49 84.85 0.47 -0.91 16 26 N -0.92 -59.70 13.67 21.62 0.30 -59.41 16 27 Si 1.02 45.72 29.55 68.60 2.03 47.75 16 28 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 29 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 30 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 31 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.06 1.65 7.66 -2.39 -0.02 1.63 16 33 H 0.07 1.76 7.66 -2.39 -0.02 1.74 16 34 H 0.16 4.44 6.28 -2.91 -0.02 4.43 16 35 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 36 H 0.17 1.73 5.90 -2.91 -0.02 1.71 16 37 H 0.12 0.86 5.37 -2.39 -0.01 0.85 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.11 0.76 8.06 -2.39 -0.02 0.75 16 40 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.09 0.69 8.08 -2.38 -0.02 0.67 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.09 1.60 8.11 -2.39 -0.02 1.58 16 46 H 0.05 1.45 8.13 -2.39 -0.02 1.43 16 47 H 0.05 1.96 6.63 -2.39 -0.02 1.94 16 48 H 0.04 1.41 6.94 -2.39 -0.02 1.39 16 49 H 0.11 4.10 7.03 -2.91 -0.02 4.08 16 50 H 0.11 5.84 5.71 -2.91 -0.02 5.82 16 51 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -88.80 401.10 2.84 -85.96 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.94 Total: 27.59 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 7.39 Total: -20.91 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -6.61 Total: -87.85 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -0.91 Total: -52.53 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -88.80 2.84 -85.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098055872.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.817 kcal (2) G-P(sol) polarization free energy of solvation -88.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds