Wall clock time and date at job start Tue Mar 31 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 C 1.53001 * 109.47125 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47125 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47121 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47121 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.46943 * 179.97438 * 7 6 5 9 9 O 1.21313 * 120.00126 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99723 * 179.97438 * 8 7 6 11 11 N 1.40100 * 119.99563 * 180.02562 * 10 8 7 12 12 C 1.29808 * 119.99671 * 180.02562 * 11 10 8 13 13 C 1.47390 * 120.00003 * 179.97438 * 12 11 10 14 14 C 1.39766 * 120.08025 * 179.97438 * 13 12 11 15 15 C 1.37745 * 119.91641 * 179.97438 * 14 13 12 16 16 C 1.39086 * 120.08327 * 359.97438 * 15 14 13 17 17 N 1.39470 * 119.92161 * 179.97438 * 16 15 14 18 18 C 1.46496 * 119.99827 * 0.02562 * 17 16 15 19 19 C 1.46492 * 120.00018 * 180.02562 * 17 16 15 20 20 C 1.50696 * 109.47380 * 90.00174 * 19 17 16 21 21 H 1.08001 * 120.00212 * 359.97438 * 20 19 17 22 22 C 1.37881 * 119.99988 * 179.97438 * 20 19 17 23 23 N 1.31514 * 119.99887 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00264 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47407 * 89.99734 * 24 22 20 26 26 H 1.48501 * 109.46894 * 209.99882 * 24 22 20 27 27 H 1.48505 * 109.46841 * 329.99531 * 24 22 20 28 28 C 1.39093 * 120.16123 * 0.02562 * 16 15 14 29 29 C 1.37737 * 120.08376 * 0.02562 * 28 16 15 30 30 H 1.08999 * 109.46681 * 299.99871 * 1 2 3 31 31 H 1.09005 * 109.47211 * 59.99716 * 1 2 3 32 32 H 1.08995 * 109.47374 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47176 * 240.00136 * 2 1 3 34 34 H 1.08992 * 109.47442 * 120.00073 * 2 1 3 35 35 H 1.08999 * 109.47238 * 60.00470 * 3 2 1 36 36 H 1.09005 * 109.47310 * 300.00223 * 3 2 1 37 37 H 1.08994 * 109.47652 * 59.99653 * 4 3 2 38 38 H 1.09000 * 109.46966 * 299.99601 * 4 3 2 39 39 H 1.09003 * 109.46984 * 59.99621 * 5 4 3 40 40 H 1.08992 * 109.47022 * 299.99933 * 5 4 3 41 41 H 1.09003 * 109.47176 * 60.00136 * 6 5 4 42 42 H 1.09005 * 109.47211 * 300.00284 * 6 5 4 43 43 H 1.09003 * 109.46984 * 60.00018 * 7 6 5 44 44 H 1.09000 * 109.46873 * 300.00055 * 7 6 5 45 45 H 0.96994 * 120.00039 * 0.02562 * 10 8 7 46 46 H 1.08000 * 119.99951 * 359.97438 * 12 11 10 47 47 H 1.08003 * 120.04267 * 0.25945 * 14 13 12 48 48 H 1.08004 * 119.95635 * 180.02562 * 15 14 13 49 49 H 1.09002 * 109.47169 * 89.99603 * 18 17 16 50 50 H 1.09000 * 109.47284 * 209.99873 * 18 17 16 51 51 H 1.09001 * 109.47147 * 329.99938 * 18 17 16 52 52 H 1.09004 * 109.46917 * 210.00454 * 19 17 16 53 53 H 1.09000 * 109.47675 * 329.99770 * 19 17 16 54 54 H 0.96999 * 120.00198 * 180.02562 * 23 22 20 55 55 H 1.08004 * 119.95912 * 180.02562 * 28 16 15 56 56 H 1.08003 * 120.04459 * 179.97438 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 6 5.6100 2.8850 -0.0013 7 6 6.1200 4.3275 -0.0013 8 6 7.6270 4.3275 -0.0007 9 8 8.2336 3.2769 -0.0007 10 7 8.3009 5.4947 -0.0011 11 7 9.7019 5.4947 -0.0010 12 6 10.3510 6.6188 -0.0009 13 6 11.8249 6.6188 -0.0003 14 6 12.5254 7.8283 -0.0007 15 6 13.9028 7.8243 0.0004 16 6 14.5966 6.6188 0.0025 17 7 15.9913 6.6188 0.0031 18 6 16.7238 7.8875 0.0021 19 6 16.7237 5.3501 0.0047 20 6 16.9755 4.9135 -1.4155 21 1 16.6246 5.5202 -2.2372 22 6 17.6538 3.7395 -1.6659 23 7 17.8731 3.3583 -2.9053 24 14 18.2601 2.6897 -0.2447 25 1 17.2085 1.7112 0.1318 26 1 19.4885 1.9631 -0.6549 27 1 18.5654 3.5605 0.9189 28 6 13.9028 5.4133 0.0029 29 6 12.5254 5.4093 0.0007 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9331 0.9288 -0.8908 38 1 3.9337 0.9286 0.8892 39 1 3.7170 3.3991 0.8887 40 1 3.7163 3.3985 -0.8912 41 1 5.9734 2.3708 -0.8911 42 1 5.9734 2.3715 0.8889 43 1 5.7567 4.8414 0.8887 44 1 5.7567 4.8413 -0.8913 45 1 7.8159 6.3347 -0.0014 46 1 9.8110 7.5541 -0.0013 47 1 11.9874 8.7647 0.0027 48 1 14.4448 8.7585 0.0005 49 1 16.9049 8.2032 1.0295 50 1 17.6764 7.7566 -0.5112 51 1 16.1349 8.6466 -0.5128 52 1 17.6759 5.4809 0.5189 53 1 16.1345 4.5909 0.5191 54 1 18.3500 2.5322 -3.0815 55 1 14.4448 4.4791 0.0050 56 1 11.9874 4.4729 0.0007 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100937096.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:19 Heat of formation + Delta-G solvation = -16.188049 kcal Electronic energy + Delta-G solvation = -29554.057681 eV Core-core repulsion = 25462.115889 eV Total energy + Delta-G solvation = -4091.941792 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 359.231 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.76349 -40.41528 -38.09071 -37.51765 -36.80289 -35.10839 -34.77286 -33.46269 -32.07061 -31.72838 -30.65068 -29.76409 -27.78934 -26.86469 -24.97076 -24.02613 -23.31985 -22.46636 -21.88599 -21.82305 -21.38111 -20.84814 -19.10585 -18.52693 -18.06892 -17.86282 -17.17727 -16.75906 -16.46810 -16.08348 -16.05109 -15.43247 -15.40808 -15.20139 -15.10190 -14.85546 -14.74510 -14.40929 -14.27729 -14.17034 -14.11933 -13.79148 -13.40839 -13.18865 -13.14647 -13.02106 -12.94408 -12.78259 -12.74935 -12.57317 -12.44428 -12.12027 -12.05411 -11.98779 -11.77862 -11.75132 -11.59438 -11.49348 -11.37667 -11.31025 -11.12120 -10.90798 -10.87957 -10.82433 -9.76474 -9.70651 -8.35575 -7.89101 -6.40857 0.10402 0.69049 1.32040 1.33976 1.36796 1.43078 1.61028 1.97850 2.28394 2.48557 2.98954 3.16782 3.54813 3.75153 3.83147 3.99069 3.99479 4.14267 4.15311 4.19358 4.20778 4.31969 4.38463 4.42911 4.49374 4.56983 4.66206 4.68382 4.69329 4.73549 4.74795 4.77025 4.82245 4.88390 4.89557 4.97481 4.98465 5.02182 5.02740 5.04516 5.14094 5.23837 5.27578 5.30618 5.32063 5.43279 5.45405 5.52026 5.52546 5.56558 5.61056 5.73690 6.01989 6.13195 6.22448 6.54591 6.64054 6.66369 6.80032 7.24473 7.54076 8.81683 Molecular weight = 359.23amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.001327 C = 0.001217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.783969 B =21102.686289 C =23001.026083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C -0.115 4.115 4 C -0.124 4.124 5 C -0.109 4.109 6 C -0.106 4.106 7 C -0.120 4.120 8 C 0.517 3.483 9 O -0.571 6.571 10 N -0.577 5.577 11 N -0.312 5.312 12 C 0.151 3.849 13 C -0.151 4.151 14 C -0.018 4.018 15 C -0.217 4.217 16 C 0.233 3.767 17 N -0.620 5.620 18 C 0.092 3.908 19 C 0.227 3.773 20 C -0.537 4.537 21 H 0.028 0.972 22 C 0.014 3.986 23 N -0.945 5.945 24 Si 0.942 3.058 25 H -0.272 1.272 26 H -0.278 1.278 27 H -0.239 1.239 28 C -0.227 4.227 29 C -0.040 4.040 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.404 0.596 46 H 0.162 0.838 47 H 0.173 0.827 48 H 0.150 0.850 49 H 0.067 0.933 50 H 0.056 0.944 51 H 0.083 0.917 52 H 0.041 0.959 53 H 0.027 0.973 54 H 0.268 0.732 55 H 0.098 0.902 56 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.788 9.900 10.026 34.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C -0.153 4.153 4 C -0.162 4.162 5 C -0.147 4.147 6 C -0.144 4.144 7 C -0.160 4.160 8 C 0.306 3.694 9 O -0.447 6.447 10 N -0.321 5.321 11 N -0.117 5.117 12 C -0.057 4.057 13 C -0.157 4.157 14 C -0.039 4.039 15 C -0.240 4.240 16 C 0.125 3.875 17 N -0.326 5.326 18 C -0.050 4.050 19 C 0.105 3.895 20 C -0.576 4.576 21 H 0.047 0.953 22 C -0.184 4.184 23 N -0.585 5.585 24 Si 0.765 3.235 25 H -0.197 1.197 26 H -0.204 1.204 27 H -0.162 1.162 28 C -0.250 4.250 29 C -0.061 4.061 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.245 0.755 46 H 0.179 0.821 47 H 0.190 0.810 48 H 0.168 0.832 49 H 0.086 0.914 50 H 0.075 0.925 51 H 0.101 0.899 52 H 0.059 0.941 53 H 0.045 0.955 54 H 0.077 0.923 55 H 0.116 0.884 56 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -31.152 8.029 9.929 33.667 hybrid contribution 0.662 -0.291 -0.227 0.758 sum -30.490 7.737 9.702 32.919 Atomic orbital electron populations 1.21776 0.95406 1.01772 1.02026 1.21572 0.96304 0.97209 1.01677 1.21589 0.94637 0.96625 1.02425 1.21618 0.95888 0.97117 1.01562 1.21546 0.92829 0.96935 1.03382 1.21349 0.96434 0.94714 1.01936 1.21756 0.86216 1.00545 1.07509 1.21804 0.91566 0.81817 0.74199 1.90724 1.71779 1.33008 1.49182 1.46898 1.01540 1.10144 1.73522 1.75034 0.92086 1.28002 1.16599 1.24580 0.93341 0.94868 0.92906 1.18241 0.90239 0.93408 1.13770 1.21240 0.92636 0.97312 0.92686 1.20855 0.94896 0.95916 1.12308 1.18397 0.83632 0.94624 0.90828 1.46793 1.02460 1.06988 1.76311 1.21754 0.96734 0.84700 1.01829 1.19393 0.92188 0.83101 0.94853 1.21662 1.36089 1.07136 0.92698 0.95345 1.25833 0.95606 0.98665 0.98337 1.70056 1.42757 1.24300 1.21408 0.85792 0.78333 0.79347 0.80012 1.19744 1.20368 1.16212 1.20693 0.94733 0.97094 1.12441 1.21029 0.92584 0.98331 0.94159 0.92462 0.92519 0.92750 0.92548 0.92458 0.91485 0.91595 0.92868 0.92729 0.90393 0.90538 0.93288 0.93095 0.85380 0.85570 0.75461 0.82100 0.80952 0.83199 0.91442 0.92479 0.89886 0.94148 0.95533 0.92339 0.88418 0.87555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 71.98 0.71 -0.61 16 2 C -0.13 -1.34 5.93 30.60 0.18 -1.16 16 3 C -0.12 -1.09 5.21 30.60 0.16 -0.93 16 4 C -0.12 -1.45 5.21 30.60 0.16 -1.29 16 5 C -0.11 -1.04 5.21 30.60 0.16 -0.88 16 6 C -0.11 -1.63 4.50 30.60 0.14 -1.49 16 7 C -0.12 -1.39 5.70 29.85 0.17 -1.22 16 8 C 0.52 12.40 7.95 87.66 0.70 13.10 16 9 O -0.57 -20.97 16.32 -3.13 -0.05 -21.02 16 10 N -0.58 -12.12 6.26 -173.50 -1.09 -13.20 16 11 N -0.31 -9.06 10.15 -52.21 -0.53 -9.59 16 12 C 0.15 3.41 10.74 87.40 0.94 4.35 16 13 C -0.15 -4.30 5.87 -20.13 -0.12 -4.42 16 14 C -0.02 -0.41 9.78 22.52 0.22 -0.19 16 15 C -0.22 -6.12 9.18 22.36 0.21 -5.91 16 16 C 0.23 8.85 6.55 38.34 0.25 9.10 16 17 N -0.62 -24.93 2.98 -726.44 -2.17 -27.09 16 18 C 0.09 2.80 10.18 127.77 1.30 4.10 16 19 C 0.23 10.73 3.97 85.63 0.34 11.07 16 20 C -0.54 -31.03 9.94 25.60 0.25 -30.78 16 21 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 22 C 0.01 0.81 5.47 84.66 0.46 1.27 16 23 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 24 Si 0.94 43.90 27.47 68.60 1.88 45.78 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 27 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 28 C -0.23 -9.50 9.19 22.36 0.21 -9.29 16 29 C -0.04 -1.49 9.57 22.52 0.22 -1.28 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 42 H 0.05 0.98 8.10 -2.38 -0.02 0.96 16 43 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.40 4.23 8.65 -213.33 -1.85 2.39 16 46 H 0.16 1.81 8.02 -2.91 -0.02 1.79 16 47 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 48 H 0.15 3.32 6.12 -2.91 -0.02 3.30 16 49 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.06 1.87 8.07 -2.39 -0.02 1.85 16 51 H 0.08 2.10 6.18 -2.39 -0.01 2.08 16 52 H 0.04 1.81 7.13 -2.38 -0.02 1.80 16 53 H 0.03 1.28 5.61 -2.39 -0.01 1.26 16 54 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 55 H 0.10 4.63 6.12 -2.91 -0.02 4.61 16 56 H 0.11 4.28 7.55 -2.91 -0.02 4.26 16 Total: -1.00 -84.87 456.04 3.95 -80.92 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -1.05 Total: 20.15 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 6.66 Total: -16.45 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -3.49 Total: -109.38 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.05 Total: -21.02 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.78 kcal Total: -84.87 3.95 -80.92 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100937096.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.734 kcal (2) G-P(sol) polarization free energy of solvation -84.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds