Wall clock time and date at job start Tue Mar 31 2020 07:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46793 * 2 1 4 4 C 1.50703 * 109.46730 * 119.99604 * 2 1 3 5 5 C 1.34330 * 126.43751 * 120.01021 * 4 2 1 6 6 N 1.34479 * 107.66392 * 179.97438 * 5 4 2 7 7 C 1.30251 * 108.70254 * 359.97438 * 6 5 4 8 8 C 1.50701 * 125.61958 * 179.97438 * 7 6 5 9 9 N 1.46896 * 109.47288 * 90.02570 * 8 7 6 10 10 C 1.46902 * 110.99620 * 66.04684 * 9 8 7 11 11 C 1.46903 * 111.00290 * 189.99866 * 9 8 7 12 12 H 1.08996 * 110.90060 * 297.59242 * 11 9 8 13 13 C 1.55145 * 110.98776 * 61.45518 * 11 9 8 14 14 C 1.54313 * 103.17258 * 153.83027 * 13 11 9 15 15 N 1.47440 * 107.23723 * 337.63112 * 14 13 11 16 16 C 1.46900 * 111.00147 * 236.73941 * 15 14 13 17 17 C 1.53001 * 109.47370 * 175.92351 * 16 15 14 18 18 H 1.09008 * 109.47179 * 305.11871 * 17 16 15 19 19 C 1.47200 * 109.47092 * 65.11565 * 17 16 15 20 20 N 9.78452 * 120.23659 * 88.53020 * 6 1 2 21 21 C 1.52995 * 109.47210 * 185.11874 * 17 16 15 22 22 C 1.50708 * 109.46858 * 175.00108 * 21 17 16 23 23 H 1.07998 * 120.00222 * 359.97438 * 22 21 17 24 24 C 1.37876 * 119.99571 * 179.97438 * 22 21 17 25 25 N 1.31516 * 119.99607 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00424 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47215 * 89.99760 * 26 24 22 28 28 H 1.48495 * 109.47231 * 209.99930 * 26 24 22 29 29 H 1.48503 * 109.46806 * 330.00020 * 26 24 22 30 30 C 1.47840 * 108.56638 * 359.00995 * 15 14 13 31 31 O 1.33962 * 108.76379 * 0.23613 * 7 6 5 32 32 H 1.09000 * 109.46803 * 60.00256 * 1 2 3 33 33 H 1.09003 * 109.46631 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47327 * 300.00012 * 1 2 3 35 35 H 1.08995 * 109.47327 * 239.99988 * 2 1 3 36 36 H 1.09002 * 109.47111 * 180.02562 * 3 2 1 37 37 H 1.09000 * 109.47237 * 299.99478 * 3 2 1 38 38 H 1.08995 * 109.47193 * 59.99907 * 3 2 1 39 39 H 1.08001 * 126.16978 * 359.93604 * 5 4 2 40 40 H 1.09000 * 109.47334 * 330.02688 * 8 7 6 41 41 H 1.09007 * 109.47236 * 210.03187 * 8 7 6 42 42 H 1.09000 * 109.47184 * 183.95001 * 10 9 8 43 43 H 1.08995 * 109.47461 * 303.95422 * 10 9 8 44 44 H 1.09001 * 109.47155 * 63.95670 * 10 9 8 45 45 H 1.08999 * 110.70195 * 35.36228 * 13 11 9 46 46 H 1.08994 * 110.70891 * 272.30383 * 13 11 9 47 47 H 1.09007 * 109.88653 * 97.03839 * 14 13 11 48 48 H 1.08999 * 109.89191 * 218.22501 * 14 13 11 49 49 H 1.09001 * 109.47288 * 295.92655 * 16 15 14 50 50 H 1.09000 * 109.46716 * 55.92485 * 16 15 14 51 51 H 1.08999 * 109.47343 * 294.99661 * 21 17 16 52 52 H 1.08997 * 109.47362 * 55.00024 * 21 17 16 53 53 H 0.97003 * 119.99787 * 180.02562 * 25 24 22 54 54 H 1.09007 * 110.37539 * 142.92732 * 30 15 14 55 55 H 1.09006 * 110.37526 * 265.15692 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 2.8078 -1.8068 1.2582 6 7 3.0285 -2.1182 2.5477 7 6 2.4145 -1.2486 3.2983 8 6 2.4081 -1.2392 4.8053 9 7 3.5369 -0.4368 5.2948 10 6 3.3717 0.9781 4.9358 11 6 3.7059 -0.5956 6.7454 12 1 2.8269 -0.2367 7.2809 13 6 4.0150 -2.0714 7.1106 14 6 4.7967 -1.9495 8.4355 15 7 5.3658 -0.5902 8.4835 16 6 6.8251 -0.6358 8.6450 17 6 7.3892 0.7853 8.5887 18 1 7.0673 1.2678 7.6657 19 6 6.8960 1.5551 9.7424 20 7 6.5129 2.1484 10.6342 21 6 8.9176 0.7294 8.6286 22 6 9.4759 2.1178 8.4498 23 1 8.8075 2.9561 8.3202 24 6 10.8401 2.3176 8.4516 25 7 11.3273 3.5291 8.2951 26 14 11.9964 0.8676 8.6751 27 1 12.3325 0.2933 7.3475 28 1 13.2398 1.3248 9.3458 29 1 11.3358 -0.1681 9.5096 30 6 4.9920 0.1207 7.2424 31 8 1.7849 -0.3673 2.5100 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.8934 -0.5138 -0.8899 36 1 3.1300 1.4426 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6766 1.9563 0.8899 39 1 3.1854 -2.3423 0.3996 40 1 2.5007 -2.2603 5.1754 41 1 1.4731 -0.8070 5.1620 42 1 4.2534 1.5376 5.2484 43 1 3.2486 1.0672 3.8565 44 1 2.4905 1.3795 5.4364 45 1 4.6305 -2.5379 6.3414 46 1 3.0927 -2.6334 7.2576 47 1 4.1226 -2.0994 9.2789 48 1 5.5979 -2.6880 8.4626 49 1 7.0704 -1.0862 9.6068 50 1 7.2609 -1.2317 7.8431 51 1 9.2416 0.3285 9.5890 52 1 9.2788 0.0864 7.8260 53 1 12.2871 3.6697 8.2960 54 1 4.7840 1.1697 7.4538 55 1 5.7867 0.0341 6.5013 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107355037.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:37 Heat of formation + Delta-G solvation = 28.010616 kcal Electronic energy + Delta-G solvation = -32251.820115 eV Core-core repulsion = 28096.369010 eV Total energy + Delta-G solvation = -4155.451105 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.227 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -44.34899 -40.64686 -38.56009 -37.24889 -36.53933 -35.70884 -35.52834 -34.09257 -31.85949 -31.31782 -29.35266 -28.68704 -28.11011 -27.98405 -25.79553 -24.20261 -23.69909 -23.29104 -22.73586 -21.59365 -21.27734 -21.13058 -18.94780 -18.26079 -18.00548 -17.86773 -17.19146 -16.99255 -16.44079 -16.28356 -15.84092 -15.67728 -15.43863 -15.19344 -15.10309 -14.80081 -14.51184 -14.32638 -14.29259 -14.14961 -14.07342 -13.93766 -13.80181 -13.42617 -13.26610 -13.12568 -13.10833 -13.01229 -12.90263 -12.54961 -12.48109 -12.35622 -12.27775 -12.20665 -12.09855 -12.05001 -11.98763 -11.81627 -11.77982 -11.63724 -11.42263 -11.41799 -11.22957 -10.73509 -9.73596 -9.45282 -9.19715 -8.25222 -6.30800 0.42107 1.42106 1.44861 1.55274 1.59627 1.70660 2.02089 2.09571 2.40574 2.67929 3.05644 3.10679 3.20263 3.31234 3.55731 3.63025 3.74554 3.89251 4.00508 4.05640 4.10349 4.15023 4.23619 4.28318 4.32047 4.39281 4.45012 4.47098 4.49414 4.62297 4.66406 4.71204 4.71633 4.72120 4.83885 4.84716 4.88615 4.91312 4.94232 4.96034 4.98752 5.01912 5.10201 5.15083 5.21184 5.27692 5.30382 5.33134 5.35268 5.43363 5.62519 5.79750 5.88962 6.10435 6.12861 6.26503 6.76013 6.77507 6.88216 7.33453 8.91662 Molecular weight = 360.23amu Principal moments of inertia in cm(-1) A = 0.011069 B = 0.002039 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.055583 B =13729.061550 C =14861.100337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.008 4.008 3 C -0.148 4.148 4 C -0.037 4.037 5 C -0.061 4.061 6 N -0.492 5.492 7 C 0.187 3.813 8 C 0.154 3.846 9 N -0.535 5.535 10 C 0.023 3.977 11 C 0.083 3.917 12 H 0.067 0.933 13 C -0.126 4.126 14 C 0.045 3.955 15 N -0.545 5.545 16 C 0.066 3.934 17 C 0.023 3.977 18 H 0.108 0.892 19 C 0.263 3.737 20 N -0.512 5.512 21 C -0.003 4.003 22 C -0.530 4.530 23 H 0.028 0.972 24 C 0.002 3.998 25 N -0.953 5.953 26 Si 0.948 3.052 27 H -0.258 1.258 28 H -0.294 1.294 29 H -0.236 1.236 30 C 0.049 3.951 31 O -0.208 6.208 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.125 0.875 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.201 0.799 40 H 0.129 0.871 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.041 0.959 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.089 0.911 50 H 0.077 0.923 51 H 0.030 0.970 52 H 0.060 0.940 53 H 0.265 0.735 54 H 0.063 0.937 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.300 -16.271 -17.628 34.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 C -0.206 4.206 4 C -0.090 4.090 5 C -0.199 4.199 6 N -0.222 5.222 7 C -0.020 4.020 8 C 0.026 3.974 9 N -0.261 5.261 10 C -0.125 4.125 11 C -0.026 4.026 12 H 0.085 0.915 13 C -0.165 4.165 14 C -0.083 4.083 15 N -0.270 5.270 16 C -0.063 4.063 17 C 0.001 3.999 18 H 0.125 0.875 19 C -0.053 4.053 20 N -0.189 5.189 21 C -0.042 4.042 22 C -0.568 4.568 23 H 0.046 0.954 24 C -0.194 4.194 25 N -0.594 5.594 26 Si 0.771 3.229 27 H -0.183 1.183 28 H -0.221 1.221 29 H -0.159 1.159 30 C -0.079 4.079 31 O -0.095 6.095 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.143 0.857 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.218 0.782 40 H 0.147 0.853 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.114 0.886 47 H 0.102 0.898 48 H 0.090 0.910 49 H 0.107 0.893 50 H 0.095 0.905 51 H 0.048 0.952 52 H 0.078 0.922 53 H 0.073 0.927 54 H 0.081 0.919 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.190 -15.656 -15.811 32.867 hybrid contribution 0.475 0.715 -0.736 1.131 sum -23.714 -14.941 -16.547 32.549 Atomic orbital electron populations 1.21861 0.92786 1.02582 1.03078 1.19965 0.97018 0.95984 0.89663 1.21875 1.01197 0.94428 1.03075 1.24039 1.02170 0.98697 0.84084 1.23527 1.02798 0.98420 0.95197 1.70400 1.21340 1.27331 1.03105 1.26287 0.93493 0.86087 0.96171 1.20490 0.94101 1.01951 0.80856 1.61885 1.41221 1.09229 1.13761 1.22418 1.01460 0.87856 1.00726 1.22790 0.97296 0.97133 0.85359 0.91546 1.22829 1.01741 0.94762 0.97130 1.22840 0.98943 0.88647 0.97848 1.63604 1.10466 1.16850 1.36043 1.22362 0.87237 0.93182 1.03517 1.19104 0.96514 0.93776 0.90491 0.87468 1.29399 0.90188 0.91921 0.93837 1.81058 1.12924 1.11610 1.13325 1.19589 0.89786 0.96008 0.98809 1.21366 0.92186 0.93727 1.49515 0.95403 1.26049 1.00479 0.98769 0.94145 1.70091 1.13481 1.23726 1.52085 0.85689 0.77646 0.79736 0.79838 1.18289 1.22060 1.15910 1.23070 0.96644 0.97868 0.90290 1.84376 1.59142 1.48883 1.17138 0.89516 0.92225 0.93353 0.85681 0.92851 0.89433 0.93397 0.78171 0.85347 0.90345 0.91053 0.92425 0.94090 0.90390 0.88623 0.89832 0.91022 0.89311 0.90531 0.95192 0.92230 0.92652 0.91905 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.18 71.98 0.66 -0.57 16 2 C -0.01 -0.08 3.33 -11.54 -0.04 -0.12 16 3 C -0.15 -1.55 9.18 71.98 0.66 -0.89 16 4 C -0.04 -0.62 5.89 24.79 0.15 -0.47 16 5 C -0.06 -1.15 11.79 83.39 0.98 -0.17 16 6 N -0.49 -11.49 11.29 -303.84 -3.43 -14.92 16 7 C 0.19 3.88 6.91 88.34 0.61 4.49 16 8 C 0.15 2.47 5.47 85.56 0.47 2.94 16 9 N -0.54 -10.03 4.66 -892.50 -4.16 -14.19 16 10 C 0.02 0.45 9.20 127.69 1.17 1.63 16 11 C 0.08 1.47 2.72 46.47 0.13 1.60 16 12 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 13 C -0.13 -1.84 5.30 31.77 0.17 -1.67 16 14 C 0.04 0.76 6.90 86.64 0.60 1.36 16 15 N -0.54 -12.89 4.97 -884.56 -4.40 -17.29 16 16 C 0.07 1.70 3.96 86.30 0.34 2.04 16 17 C 0.02 0.80 2.00 -12.60 -0.03 0.78 16 18 H 0.11 3.71 6.61 -2.38 -0.02 3.69 16 19 C 0.26 10.97 13.68 89.42 1.22 12.19 16 20 N -0.51 -23.69 18.55 20.03 0.37 -23.32 16 21 C 0.00 -0.12 3.49 29.85 0.10 -0.02 16 22 C -0.53 -29.12 9.15 25.60 0.23 -28.88 16 23 H 0.03 1.73 7.84 -2.91 -0.02 1.71 16 24 C 0.00 0.13 5.47 84.65 0.46 0.59 16 25 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 26 Si 0.95 42.07 27.47 68.60 1.88 43.95 16 27 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 28 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 29 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 30 C 0.05 1.14 3.77 86.94 0.33 1.47 16 31 O -0.21 -4.23 10.06 -3.69 -0.04 -4.27 16 32 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.13 0.71 8.11 -2.39 -0.02 0.69 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 38 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.20 2.59 8.06 -2.91 -0.02 2.56 16 40 H 0.13 1.74 6.72 -2.39 -0.02 1.72 16 41 H 0.08 1.00 8.12 -2.38 -0.02 0.98 16 42 H 0.07 1.51 7.17 -2.39 -0.02 1.49 16 43 H 0.06 1.20 6.61 -2.39 -0.02 1.19 16 44 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.10 0.98 7.86 -2.39 -0.02 0.96 16 47 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 48 H 0.07 1.10 7.57 -2.39 -0.02 1.08 16 49 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.08 1.68 8.12 -2.39 -0.02 1.67 16 51 H 0.03 1.23 7.20 -2.39 -0.02 1.22 16 52 H 0.06 2.20 7.57 -2.39 -0.02 2.18 16 53 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 54 H 0.06 1.64 8.00 -2.38 -0.02 1.62 16 55 H 0.06 1.47 7.41 -2.38 -0.02 1.45 16 Total: -1.00 -75.31 439.93 -0.44 -75.75 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.80 Total: 17.31 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 8.23 Total: -3.71 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -11.32 Total: -129.04 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.04 Total: -4.27 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.88 Total: 43.95 kcal Total: -75.31 -0.44 -75.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107355037.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.760 kcal (2) G-P(sol) polarization free energy of solvation -75.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds