Wall clock time and date at job start Tue Mar 31 2020 07:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46858 * 2 1 4 4 C 1.35495 * 126.97408 * 269.99951 * 3 2 1 5 5 C 1.50696 * 126.34984 * 359.97438 * 4 3 2 6 6 N 1.30524 * 107.30383 * 180.02562 * 4 3 2 7 7 N 1.28598 * 109.67340 * 359.72571 * 6 4 3 8 8 C 1.30525 * 109.67057 * 0.45344 * 7 6 4 9 9 C 1.50702 * 126.34574 * 179.82385 * 8 7 6 10 10 N 1.46898 * 109.46796 * 269.68692 * 9 8 7 11 11 C 1.46902 * 111.00283 * 66.04964 * 10 9 8 12 12 C 1.46906 * 110.99888 * 189.99926 * 10 9 8 13 13 H 1.08994 * 110.62993 * 303.10606 * 12 10 9 14 14 C 1.55137 * 110.70505 * 66.40135 * 12 10 9 15 15 C 1.54907 * 101.65568 * 154.03457 * 14 12 10 16 16 N 1.47847 * 104.79464 * 322.93193 * 15 14 12 17 17 C 1.46902 * 111.00006 * 146.36018 * 16 15 14 18 18 C 1.53005 * 109.46926 * 49.15588 * 17 16 15 19 19 H 1.08995 * 109.46856 * 305.00214 * 18 17 16 20 20 C 1.47195 * 109.46992 * 65.00163 * 18 17 16 21 21 N 8.79733 * 113.73704 * 126.51341 * 2 1 3 22 22 C 1.52997 * 109.46673 * 185.00008 * 18 17 16 23 23 C 1.50703 * 109.47026 * 175.00253 * 22 18 17 24 24 H 1.08007 * 119.99706 * 359.97438 * 23 22 18 25 25 C 1.37872 * 120.00488 * 180.02562 * 23 22 18 26 26 N 1.31515 * 119.99782 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00315 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47530 * 59.99384 * 27 25 23 29 29 H 1.48505 * 109.47072 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46812 * 299.99569 * 27 25 23 31 31 C 1.47442 * 108.56613 * 24.09264 * 16 15 14 32 32 H 1.08999 * 109.46878 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47340 * 299.99733 * 1 2 3 34 34 H 1.08995 * 109.47598 * 60.00438 * 1 2 3 35 35 H 1.08998 * 109.47386 * 239.99809 * 2 1 3 36 36 H 1.09004 * 109.47373 * 119.99521 * 2 1 3 37 37 H 1.09000 * 109.46851 * 90.00612 * 5 4 3 38 38 H 1.08998 * 109.47120 * 209.99969 * 5 4 3 39 39 H 1.08992 * 109.47511 * 330.00093 * 5 4 3 40 40 H 1.08999 * 109.47012 * 149.69123 * 9 8 7 41 41 H 1.08996 * 109.47316 * 29.68394 * 9 8 7 42 42 H 1.09004 * 109.47457 * 183.95363 * 11 10 9 43 43 H 1.09001 * 109.46615 * 303.95014 * 11 10 9 44 44 H 1.08990 * 109.47358 * 63.94680 * 11 10 9 45 45 H 1.08995 * 110.99088 * 272.12981 * 14 12 10 46 46 H 1.09010 * 110.99217 * 35.94476 * 14 12 10 47 47 H 1.08991 * 110.37408 * 204.10045 * 15 14 12 48 48 H 1.09001 * 110.46373 * 81.80801 * 15 14 12 49 49 H 1.08994 * 109.46827 * 169.15767 * 17 16 15 50 50 H 1.08998 * 109.46712 * 289.15891 * 17 16 15 51 51 H 1.09000 * 109.47053 * 294.99816 * 22 18 17 52 52 H 1.08998 * 109.47402 * 55.00012 * 22 18 17 53 53 H 0.97000 * 120.00504 * 179.97438 * 26 25 23 54 54 H 1.08998 * 109.88763 * 239.60301 * 31 16 15 55 55 H 1.08999 * 110.02631 * 118.49298 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2899 2.1496 -1.0825 5 6 2.1463 1.7417 -2.5261 6 7 2.7000 3.3082 -0.6431 7 7 2.6949 3.3101 0.6428 8 6 2.2904 2.1495 1.0823 9 6 2.1465 1.7419 2.5260 10 7 3.4054 1.1474 2.9947 11 6 4.4823 2.1463 3.0193 12 6 3.2345 0.5250 4.3144 13 1 2.8624 1.2518 5.0364 14 6 2.2861 -0.6995 4.2246 15 6 2.7612 -1.5521 5.4275 16 7 4.2283 -1.3721 5.4618 17 6 4.7293 -1.3948 6.8426 18 6 4.1581 -2.6123 7.5724 19 1 3.0703 -2.5989 7.5049 20 6 4.6733 -3.8431 6.9510 21 7 5.0713 -4.7917 6.4724 22 6 4.5785 -2.5688 9.0429 23 6 3.9164 -3.6990 9.7882 24 1 3.2610 -4.3799 9.2654 25 6 4.1465 -3.8632 11.1376 26 7 4.9442 -3.0338 11.7743 27 14 3.3264 -5.2645 12.0613 28 1 3.7420 -6.5600 11.4662 29 1 3.7333 -5.2216 13.4888 30 1 1.8511 -5.1255 11.9632 31 6 4.5605 -0.0971 4.8001 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5137 -0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 1.1427 1.9856 -2.8744 38 1 2.8801 2.2762 -3.1294 39 1 2.3122 0.6685 -2.6187 40 1 1.3430 1.0112 2.6188 41 1 1.9119 2.6187 3.1295 42 1 5.4183 1.6647 3.3025 43 1 4.5875 2.5915 2.0300 44 1 4.2401 2.9239 3.7437 45 1 1.2460 -0.3975 4.3465 46 1 2.4281 -1.2353 3.2860 47 1 2.5111 -2.6013 5.2712 48 1 2.3126 -1.1895 6.3524 49 1 5.8176 -1.4544 6.8332 50 1 4.4195 -0.4848 7.3564 51 1 5.6613 -2.6715 9.1144 52 1 4.2741 -1.6178 9.4799 53 1 5.1058 -3.1490 12.7238 54 1 5.2173 -0.2808 3.9499 55 1 5.0481 0.5743 5.5069 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107355063.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:48 Heat of formation + Delta-G solvation = 90.258652 kcal Electronic energy + Delta-G solvation = -32497.786897 eV Core-core repulsion = 28377.327820 eV Total energy + Delta-G solvation = -4120.459077 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.233 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -44.14415 -40.68272 -38.58917 -37.15393 -36.72452 -35.55881 -34.09548 -33.33178 -31.66064 -31.45627 -30.26509 -28.89715 -28.21465 -27.64876 -25.43889 -24.85595 -24.33986 -23.61563 -22.16525 -21.75488 -21.33076 -20.98922 -18.56636 -18.11193 -17.93418 -17.74065 -17.12215 -16.88122 -16.53074 -16.02587 -15.96475 -15.45259 -15.38239 -15.07531 -14.85114 -14.59460 -14.51939 -14.23513 -14.11374 -13.92836 -13.81102 -13.79123 -13.69189 -13.50901 -13.42589 -13.24752 -13.14881 -13.02654 -12.83533 -12.78692 -12.53313 -12.42832 -12.35158 -12.25257 -12.19458 -12.05385 -11.91405 -11.76412 -11.72264 -11.37068 -11.26972 -11.11934 -11.08641 -10.54448 -10.08176 -9.48878 -9.15645 -8.18840 -6.27316 0.79020 1.41507 1.43516 1.50246 1.55225 1.78967 2.06678 2.13433 2.41806 2.77228 3.08681 3.16906 3.31306 3.35212 3.48798 3.56721 3.70498 3.82976 3.89552 4.05559 4.09482 4.14792 4.20419 4.31910 4.33680 4.39162 4.48065 4.49807 4.53679 4.58379 4.63980 4.66567 4.69131 4.74339 4.76540 4.86298 4.90569 4.96524 4.98641 5.00337 5.02665 5.05449 5.10471 5.14012 5.21206 5.25468 5.30582 5.46181 5.61257 5.78835 5.83319 5.94157 6.05120 6.08109 6.10567 6.22592 6.83061 6.92645 7.41289 7.74926 8.91714 Molecular weight = 360.23amu Principal moments of inertia in cm(-1) A = 0.020570 B = 0.001768 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.899792 B =15836.042658 C =16303.097647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.092 3.908 3 N -0.456 5.456 4 C 0.175 3.825 5 C -0.065 4.065 6 N -0.348 5.348 7 N -0.333 5.333 8 C 0.186 3.814 9 C 0.143 3.857 10 N -0.527 5.527 11 C 0.027 3.973 12 C 0.070 3.930 13 H 0.063 0.937 14 C -0.109 4.109 15 C 0.034 3.966 16 N -0.541 5.541 17 C 0.067 3.933 18 C 0.018 3.982 19 H 0.121 0.879 20 C 0.264 3.736 21 N -0.511 5.511 22 C 0.038 3.962 23 C -0.538 4.538 24 H 0.055 0.945 25 C 0.011 3.989 26 N -0.923 5.923 27 Si 0.948 3.052 28 H -0.282 1.282 29 H -0.284 1.284 30 H -0.261 1.261 31 C 0.055 3.945 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.034 0.966 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.072 0.928 50 H 0.070 0.930 51 H -0.001 1.001 52 H 0.035 0.965 53 H 0.264 0.736 54 H 0.077 0.923 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.997 10.497 -26.133 30.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.147 5.147 4 C -0.094 4.094 5 C -0.124 4.124 6 N -0.188 5.188 7 N -0.174 5.174 8 C -0.084 4.084 9 C 0.013 3.987 10 N -0.253 5.253 11 C -0.122 4.122 12 C -0.039 4.039 13 H 0.080 0.920 14 C -0.147 4.147 15 C -0.094 4.094 16 N -0.266 5.266 17 C -0.062 4.062 18 C -0.004 4.004 19 H 0.138 0.862 20 C -0.052 4.052 21 N -0.188 5.188 22 C -0.001 4.001 23 C -0.576 4.576 24 H 0.073 0.927 25 C -0.188 4.188 26 N -0.563 5.563 27 Si 0.774 3.226 28 H -0.207 1.207 29 H -0.209 1.209 30 H -0.186 1.186 31 C -0.073 4.073 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.135 0.865 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.135 0.865 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.115 0.885 46 H 0.102 0.898 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.088 0.912 51 H 0.018 0.982 52 H 0.053 0.947 53 H 0.072 0.928 54 H 0.095 0.905 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.454 9.724 -27.277 30.788 hybrid contribution -0.917 -0.237 2.141 2.341 sum -11.371 9.487 -25.136 29.174 Atomic orbital electron populations 1.22137 0.92475 1.04783 1.02766 1.22294 0.96630 0.77089 1.06876 1.46342 1.48204 1.14819 1.05312 1.25523 1.00810 0.88751 0.94275 1.20412 1.05183 1.03623 0.83141 1.74146 1.21315 1.19892 1.03488 1.74127 1.20003 1.19516 1.03707 1.24728 1.02131 0.88588 0.92926 1.20424 0.93568 1.00098 0.84608 1.62016 1.05168 1.31838 1.26247 1.22367 0.94844 0.93737 1.01216 1.22874 0.96470 0.96005 0.88564 0.91956 1.22747 0.99062 0.94231 0.98673 1.23136 0.86764 1.00867 0.98635 1.63669 1.13632 1.33463 1.15834 1.22289 1.00351 0.95777 0.87754 1.19282 1.01552 0.84758 0.94795 0.86155 1.29262 0.91695 0.93973 0.90284 1.80923 1.11265 1.13233 1.13398 1.18993 0.95782 0.97346 0.88002 1.21507 1.28351 1.13572 0.94218 0.92658 1.25718 0.95804 0.98412 0.98868 1.70026 1.37645 1.38547 1.10063 0.85754 0.79700 0.79643 0.77520 1.20736 1.20891 1.18575 1.22817 0.96808 0.88969 0.98742 0.88022 0.92509 0.91958 0.86537 0.87486 0.88122 0.88761 0.88024 0.86501 0.91287 0.90636 0.92725 0.94786 0.88548 0.89770 0.90930 0.91942 0.90957 0.91157 0.98235 0.94668 0.92752 0.90477 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 10.24 71.98 0.74 0.10 16 2 C 0.09 0.60 6.40 86.38 0.55 1.15 16 3 N -0.46 -6.70 2.75 -504.01 -1.38 -8.09 16 4 C 0.17 3.04 8.03 137.98 1.11 4.15 16 5 C -0.06 -0.48 10.24 71.23 0.73 0.25 16 6 N -0.35 -9.07 12.21 -50.15 -0.61 -9.68 16 7 N -0.33 -8.83 11.41 -50.15 -0.57 -9.41 16 8 C 0.19 3.58 6.65 137.98 0.92 4.50 16 9 C 0.14 2.04 5.04 85.56 0.43 2.47 16 10 N -0.53 -8.33 4.59 -894.69 -4.10 -12.44 16 11 C 0.03 0.48 9.07 127.69 1.16 1.64 16 12 C 0.07 1.05 2.64 46.09 0.12 1.18 16 13 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 14 C -0.11 -1.45 5.65 31.98 0.18 -1.27 16 15 C 0.03 0.65 5.22 86.77 0.45 1.10 16 16 N -0.54 -12.82 5.01 -885.55 -4.44 -17.26 16 17 C 0.07 1.85 4.19 86.30 0.36 2.21 16 18 C 0.02 0.61 1.88 -12.60 -0.02 0.59 16 19 H 0.12 3.72 6.29 -2.39 -0.02 3.71 16 20 C 0.26 10.64 13.66 89.46 1.22 11.87 16 21 N -0.51 -22.65 18.53 19.99 0.37 -22.28 16 22 C 0.04 1.70 4.42 29.85 0.13 1.83 16 23 C -0.54 -27.92 8.60 25.60 0.22 -27.70 16 24 H 0.06 2.82 7.59 -2.91 -0.02 2.80 16 25 C 0.01 0.59 5.46 84.65 0.46 1.06 16 26 N -0.92 -52.42 13.29 21.45 0.28 -52.13 16 27 Si 0.95 42.69 29.54 68.60 2.03 44.72 16 28 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 29 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 30 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 31 C 0.05 1.06 5.39 86.65 0.47 1.53 16 32 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.12 0.30 7.20 -2.39 -0.02 0.29 16 36 H 0.11 0.70 7.81 -2.38 -0.02 0.68 16 37 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 0.24 7.21 -2.39 -0.02 0.22 16 40 H 0.12 1.09 6.63 -2.39 -0.02 1.08 16 41 H 0.07 1.03 8.12 -2.39 -0.02 1.02 16 42 H 0.07 1.33 6.64 -2.38 -0.02 1.31 16 43 H 0.05 1.24 6.55 -2.39 -0.02 1.22 16 44 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.10 0.85 7.88 -2.39 -0.02 0.83 16 46 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.06 1.17 7.05 -2.39 -0.02 1.15 16 49 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.07 1.71 7.96 -2.39 -0.02 1.70 16 51 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 52 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 53 H 0.26 14.29 8.31 -92.71 -0.77 13.51 16 54 H 0.08 1.65 7.31 -2.39 -0.02 1.64 16 55 H 0.06 1.15 7.50 -2.39 -0.02 1.13 16 Total: -1.00 -74.15 439.17 1.67 -72.48 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 0.87 Total: 7.45 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 9.23 Total: 6.64 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -10.46 Total: -131.29 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -74.15 1.67 -72.48 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107355063.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.744 kcal (2) G-P(sol) polarization free energy of solvation -74.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds