Wall clock time and date at job start Tue Mar 31 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21285 * 119.99658 * 2 1 4 4 N 1.34771 * 120.00237 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99993 * 3.39702 * 4 2 1 6 6 C 1.50705 * 109.46852 * 275.14037 * 5 4 2 7 7 N 1.30253 * 125.62001 * 89.69467 * 6 5 4 8 8 C 1.34476 * 108.70234 * 179.83977 * 7 6 5 9 9 C 1.34328 * 107.66821 * 0.42183 * 8 7 6 10 10 C 1.50697 * 126.44809 * 179.76704 * 9 8 7 11 11 O 1.33966 * 125.62077 * 270.00353 * 6 5 4 12 12 C 1.46502 * 120.00046 * 183.38740 * 4 2 1 13 13 H 1.09004 * 110.35155 * 173.19087 * 12 4 2 14 14 C 1.54591 * 110.31124 * 295.33932 * 12 4 2 15 15 C 1.54935 * 102.92267 * 96.95606 * 14 12 4 16 16 N 1.48528 * 103.22970 * 37.41505 * 15 14 12 17 17 C 1.46896 * 111.00145 * 200.27783 * 16 15 14 18 18 C 1.52995 * 109.47333 * 287.39375 * 17 16 15 19 19 H 1.09000 * 109.47351 * 305.00373 * 18 17 16 20 20 C 1.47208 * 109.47061 * 64.99787 * 18 17 16 21 21 N 5.60244 * 134.86775 * 337.65257 * 2 1 3 22 22 C 1.53000 * 109.47254 * 184.99923 * 18 17 16 23 23 C 1.50700 * 109.46939 * 175.00504 * 22 18 17 24 24 H 1.07996 * 120.00358 * 359.97438 * 23 22 18 25 25 C 1.37876 * 119.99833 * 180.02562 * 23 22 18 26 26 N 1.31513 * 120.00125 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00181 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47023 * 59.99394 * 27 25 23 29 29 H 1.48500 * 109.47189 * 179.97438 * 27 25 23 30 30 H 1.48506 * 109.46900 * 299.99709 * 27 25 23 31 31 C 1.47907 * 105.81733 * 320.79528 * 16 15 14 32 32 H 1.09005 * 109.46816 * 175.08923 * 1 2 3 33 33 H 1.08995 * 109.47316 * 295.08841 * 1 2 3 34 34 H 1.08999 * 109.47002 * 55.09527 * 1 2 3 35 35 H 1.08998 * 109.47518 * 35.13612 * 5 4 2 36 36 H 1.08995 * 109.47575 * 155.14462 * 5 4 2 37 37 H 1.08001 * 126.16520 * 180.16506 * 8 7 6 38 38 H 1.09000 * 109.47387 * 269.98225 * 10 9 8 39 39 H 1.09008 * 109.46829 * 29.97028 * 10 9 8 40 40 H 1.09000 * 109.47758 * 149.97304 * 10 9 8 41 41 H 1.09000 * 110.72109 * 215.31504 * 14 12 4 42 42 H 1.09005 * 110.72390 * 338.59712 * 14 12 4 43 43 H 1.08995 * 110.66739 * 278.97276 * 15 14 12 44 44 H 1.09002 * 110.80902 * 155.91874 * 15 14 12 45 45 H 1.09006 * 109.47154 * 47.39861 * 17 16 15 46 46 H 1.09001 * 109.46907 * 167.39194 * 17 16 15 47 47 H 1.09002 * 109.46879 * 294.99737 * 22 18 17 48 48 H 1.08996 * 109.47169 * 55.00167 * 22 18 17 49 49 H 0.97002 * 120.00252 * 180.02562 * 26 25 23 50 50 H 1.09008 * 109.91224 * 265.97791 * 31 16 15 51 51 H 1.08997 * 110.08521 * 144.77936 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4504 -2.4348 -0.0741 6 6 1.0172 -2.8470 1.3092 7 7 -0.1061 -2.5194 1.8815 8 6 -0.1429 -3.0720 3.1069 9 6 1.0034 -3.7497 3.2832 10 6 1.4051 -4.5254 4.5112 11 8 1.7264 -3.6060 2.1552 12 6 3.6441 -1.1681 0.0755 13 1 4.0173 -2.1863 0.1863 14 6 4.2465 -0.5102 -1.1870 15 6 4.5160 0.9439 -0.7249 16 7 4.9671 0.7759 0.6802 17 6 4.8150 2.0268 1.4351 18 6 5.8784 3.0289 0.9813 19 1 6.8665 2.5794 1.0794 20 6 5.6420 3.3918 -0.4256 21 7 5.4594 3.6724 -1.5097 22 6 5.8005 4.2846 1.8519 23 6 6.9247 5.2194 1.4868 24 1 7.6250 4.9452 0.7118 25 6 7.0599 6.4244 2.1431 26 7 6.2075 6.7582 3.0874 27 14 8.4538 7.5829 1.6912 28 1 8.3362 7.9645 0.2609 29 1 8.3781 8.8018 2.5361 30 1 9.7549 6.9036 1.9169 31 6 4.1196 -0.2938 1.2505 32 1 -0.3633 -1.0240 -0.0880 33 1 -0.3634 0.4357 0.9307 34 1 -0.3633 0.5880 -0.8428 35 1 0.5724 -2.3115 -0.7081 36 1 2.0982 -3.2032 -0.4959 37 1 -0.9472 -2.9832 3.8222 38 1 1.9412 -3.8688 5.1965 39 1 0.5135 -4.9139 5.0034 40 1 2.0511 -5.3544 4.2222 41 1 5.1760 -1.0028 -1.4724 42 1 3.5314 -0.5272 -2.0095 43 1 3.6024 1.5367 -0.7675 44 1 5.2993 1.4030 -1.3281 45 1 3.8235 2.4422 1.2542 46 1 4.9359 1.8258 2.4996 47 1 4.8453 4.7829 1.6861 48 1 5.8870 4.0047 2.9018 49 1 6.3024 7.6061 3.5489 50 1 3.2605 0.1444 1.7587 51 1 4.6978 -0.8959 1.9513 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107505714.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:21 Heat of formation + Delta-G solvation = 42.575663 kcal Electronic energy + Delta-G solvation = -33140.890767 eV Core-core repulsion = 28850.238155 eV Total energy + Delta-G solvation = -4290.652612 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.74163 -40.83511 -38.15733 -36.47922 -35.74959 -35.05166 -33.83705 -32.98050 -32.28374 -30.60374 -29.58504 -29.22301 -27.87988 -26.19794 -25.68731 -23.38024 -22.75368 -22.10985 -21.68807 -21.30407 -20.75557 -19.02055 -17.77705 -17.48447 -16.86612 -16.71530 -16.46468 -16.26970 -15.81893 -15.38850 -14.91441 -14.71154 -14.46469 -14.43957 -13.87812 -13.73505 -13.64058 -13.44640 -13.36407 -13.17894 -12.97203 -12.84148 -12.46908 -12.36185 -12.27776 -12.24965 -12.00695 -11.87354 -11.81057 -11.69566 -11.29272 -11.20688 -10.93799 -10.92407 -10.69942 -10.60363 -10.54380 -10.37859 -10.12557 -9.78215 -9.42728 -9.24549 -9.12258 -9.02236 -8.36775 -7.94132 -6.00852 -4.03510 0.94504 2.05940 2.19817 2.46364 2.76599 3.36855 3.40423 3.44569 3.56968 3.79801 3.85018 4.15456 4.31233 4.34918 4.45479 4.50087 4.55252 4.63484 4.71992 4.78978 4.87384 4.92525 4.96750 5.02878 5.08570 5.13982 5.32070 5.36745 5.42751 5.46514 5.52449 5.58338 5.62117 5.74657 5.77653 5.81957 5.88741 5.96637 6.02458 6.23507 6.28835 6.34232 6.48318 6.60962 6.71839 6.98577 7.17751 7.29761 7.37084 7.54760 7.66697 7.94683 8.09222 8.33529 8.61418 9.00980 9.61033 11.10161 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.002290 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.184780 B =12225.565546 C =12938.340792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.511 3.489 3 O -0.510 6.510 4 N -0.609 5.609 5 C 0.209 3.791 6 C 0.161 3.839 7 N -0.465 5.465 8 C -0.045 4.045 9 C -0.039 4.039 10 C -0.071 4.071 11 O -0.195 6.195 12 C 0.134 3.866 13 H 0.097 0.903 14 C -0.127 4.127 15 C 0.013 3.987 16 N -0.509 5.509 17 C 0.058 3.942 18 C 0.011 3.989 19 H 0.106 0.894 20 C 0.253 3.747 21 N -0.483 5.483 22 C 0.033 3.967 23 C -0.523 4.523 24 H 0.056 0.944 25 C 0.061 3.939 26 N -0.893 5.893 27 Si 0.891 3.109 28 H -0.277 1.277 29 H -0.287 1.287 30 H -0.275 1.275 31 C 0.037 3.963 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.184 0.816 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.083 0.917 47 H 0.024 0.976 48 H 0.037 0.963 49 H 0.262 0.738 50 H 0.051 0.949 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.232 -29.062 -0.111 32.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.302 3.698 3 O -0.385 6.385 4 N -0.345 5.345 5 C 0.083 3.917 6 C -0.047 4.047 7 N -0.195 5.195 8 C -0.183 4.183 9 C -0.093 4.093 10 C -0.128 4.128 11 O -0.082 6.082 12 C 0.031 3.969 13 H 0.115 0.885 14 C -0.166 4.166 15 C -0.114 4.114 16 N -0.232 5.232 17 C -0.072 4.072 18 C -0.011 4.011 19 H 0.124 0.876 20 C -0.063 4.063 21 N -0.160 5.160 22 C -0.006 4.006 23 C -0.562 4.562 24 H 0.074 0.926 25 C -0.140 4.140 26 N -0.532 5.532 27 Si 0.719 3.281 28 H -0.203 1.203 29 H -0.212 1.212 30 H -0.200 1.200 31 C -0.093 4.093 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.143 0.857 36 H 0.130 0.870 37 H 0.201 0.799 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.102 0.898 47 H 0.042 0.958 48 H 0.055 0.945 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.069 -27.671 -1.891 31.100 hybrid contribution 0.370 0.369 0.811 0.964 sum -13.700 -27.302 -1.081 30.566 Atomic orbital electron populations 1.22023 0.91251 1.04920 1.05208 1.21032 0.90721 0.83176 0.74913 1.90667 1.69481 1.31042 1.47317 1.48355 1.06621 1.05075 1.74428 1.19918 0.99359 0.87073 0.85311 1.26879 0.87525 0.94168 0.96144 1.70390 1.19842 1.21844 1.07419 1.23090 0.99387 1.00516 0.95356 1.23567 0.92713 1.04027 0.88990 1.20316 1.03450 0.98958 0.90031 1.84397 1.44867 1.55863 1.23033 1.22078 0.77912 1.00438 0.96462 0.88470 1.22836 1.00511 0.97145 0.96137 1.23947 1.01729 0.96208 0.89478 1.64936 1.49425 1.06386 1.02499 1.22340 0.98132 0.88609 0.98078 1.19253 0.99965 0.98293 0.83609 0.87595 1.29051 0.91897 0.90713 0.94647 1.80932 1.10146 1.11301 1.13648 1.19144 0.98146 0.88983 0.94289 1.21124 1.12369 1.02612 1.20059 0.92586 1.24956 0.96228 0.97904 0.94939 1.69939 1.36274 1.22970 1.23980 0.86658 0.82681 0.80258 0.78489 1.20284 1.21240 1.20050 1.23017 0.96263 0.93990 0.95993 0.89669 0.88622 0.89039 0.85698 0.86989 0.79927 0.89486 0.88880 0.90230 0.90282 0.91189 0.88820 0.90739 0.93109 0.89846 0.95798 0.94450 0.92833 0.93073 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 9.67 36.01 0.35 -1.21 16 2 C 0.51 6.04 6.81 -10.99 -0.07 5.96 16 3 O -0.51 -8.25 10.66 5.55 0.06 -8.19 16 4 N -0.61 -5.67 2.42 -165.93 -0.40 -6.07 16 5 C 0.21 1.26 5.63 -5.19 -0.03 1.23 16 6 C 0.16 1.35 7.69 -12.95 -0.10 1.25 16 7 N -0.47 -4.34 10.19 -11.10 -0.11 -4.45 16 8 C -0.04 -0.36 11.80 -17.77 -0.21 -0.56 16 9 C -0.04 -0.29 7.39 -35.69 -0.26 -0.56 16 10 C -0.07 -0.27 10.43 36.00 0.38 0.11 16 11 O -0.20 -1.73 10.78 5.37 0.06 -1.67 16 12 C 0.13 1.40 3.55 -66.58 -0.24 1.16 16 13 H 0.10 0.78 7.85 -51.93 -0.41 0.37 16 14 C -0.13 -1.53 6.39 -24.87 -0.16 -1.69 16 15 C 0.01 0.22 4.26 -1.90 -0.01 0.21 16 16 N -0.51 -8.10 5.24 -230.46 -1.21 -9.30 16 17 C 0.06 1.04 4.36 -3.83 -0.02 1.02 16 18 C 0.01 0.22 2.42 -93.41 -0.23 0.00 16 19 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16 20 C 0.25 5.72 10.85 -20.80 -0.23 5.49 16 21 N -0.48 -11.46 17.69 42.10 0.74 -10.71 16 22 C 0.03 0.83 4.42 -27.88 -0.12 0.71 16 23 C -0.52 -14.71 8.60 -34.44 -0.30 -15.00 16 24 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 25 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 26 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 27 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 28 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 30 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 31 C 0.04 0.48 5.72 -2.75 -0.02 0.47 16 32 H 0.08 0.60 4.62 -51.93 -0.24 0.36 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.13 0.51 6.33 -51.93 -0.33 0.19 16 36 H 0.11 0.40 7.90 -51.93 -0.41 -0.01 16 37 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.17 8.14 -51.92 -0.42 -0.25 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 43 H 0.09 1.79 4.53 -52.83 -0.24 1.55 16 44 H 0.07 1.38 5.73 -51.93 -0.30 1.08 16 45 H 0.05 1.01 7.07 -51.93 -0.37 0.64 16 46 H 0.08 1.40 8.08 -51.93 -0.42 0.98 16 47 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.05 0.77 6.18 -51.92 -0.32 0.45 16 51 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 408.29 15.07 6.15 6.15 Total: -1.00 -35.67 408.29 -7.98 -43.65 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.63 Total: -0.86 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -1.36 Total: 0.25 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.24 Total: -56.44 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.12 Total: -9.86 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.67 -7.98 -43.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107505714.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.227 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds