Wall clock time and date at job start Tue Mar 31 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46895 * 111.00149 * 2 1 4 4 C 1.50692 * 109.47679 * 66.04408 * 3 2 1 5 5 N 1.29948 * 126.28885 * 90.02377 * 4 3 2 6 6 O 1.21302 * 110.25070 * 180.02562 * 5 4 3 7 7 C 1.33644 * 109.81116 * 0.02562 * 6 5 4 8 8 C 1.50698 * 126.54850 * 179.97438 * 7 6 5 9 9 C 1.53008 * 117.50079 * 8.76875 * 8 7 6 10 10 C 1.53000 * 117.50149 * 300.10997 * 8 7 6 11 11 N 1.31124 * 106.89813 * 359.97438 * 7 6 5 12 12 C 1.46899 * 111.00209 * 236.03971 * 2 1 3 13 13 H 1.09007 * 110.28567 * 64.65609 * 12 2 1 14 14 C 1.54256 * 110.32548 * 186.78344 * 12 2 1 15 15 C 1.54387 * 105.06050 * 118.89871 * 14 12 2 16 16 N 1.48561 * 104.59083 * 23.85454 * 15 14 12 17 17 C 1.46899 * 110.99627 * 200.96100 * 16 15 14 18 18 C 1.52999 * 109.47597 * 175.72867 * 17 16 15 19 19 H 1.09002 * 109.46762 * 305.14398 * 18 17 16 20 20 C 1.47201 * 109.46746 * 65.13583 * 18 17 16 21 21 N 6.70204 * 89.01661 * 220.10895 * 2 1 3 22 22 C 1.52994 * 109.47653 * 185.13937 * 18 17 16 23 23 C 1.50705 * 109.47168 * 175.00063 * 22 18 17 24 24 H 1.07992 * 119.99558 * 0.02562 * 23 22 18 25 25 C 1.37876 * 119.99754 * 179.97438 * 23 22 18 26 26 N 1.31509 * 119.99690 * 179.97438 * 25 23 22 27 27 Si 1.86795 * 120.00111 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47295 * 89.99775 * 27 25 23 29 29 H 1.48500 * 109.47293 * 209.99523 * 27 25 23 30 30 H 1.48496 * 109.47243 * 329.99631 * 27 25 23 31 31 C 1.48724 * 104.28766 * 320.56859 * 16 15 14 32 32 H 1.08999 * 109.47083 * 60.00265 * 1 2 3 33 33 H 1.08998 * 109.47728 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47517 * 300.00338 * 1 2 3 35 35 H 1.09003 * 109.47109 * 306.04050 * 3 2 1 36 36 H 1.09001 * 109.47153 * 186.04608 * 3 2 1 37 37 H 1.09001 * 115.55069 * 154.43555 * 8 7 6 38 38 H 1.08994 * 117.49703 * 0.02562 * 9 8 7 39 39 H 1.09003 * 117.49428 * 145.01526 * 9 8 7 40 40 H 1.09003 * 117.50265 * 214.98064 * 10 8 7 41 41 H 1.08998 * 117.49381 * 359.97438 * 10 8 7 42 42 H 1.09003 * 110.32426 * 237.79383 * 14 12 2 43 43 H 1.08997 * 110.32434 * 359.90286 * 14 12 2 44 44 H 1.09000 * 110.41051 * 142.62961 * 15 14 12 45 45 H 1.08996 * 110.41178 * 264.95616 * 15 14 12 46 46 H 1.09006 * 109.47297 * 295.73117 * 17 16 15 47 47 H 1.09001 * 109.47234 * 55.72914 * 17 16 15 48 48 H 1.09004 * 109.46687 * 294.99822 * 22 18 17 49 49 H 1.08994 * 109.47363 * 54.99723 * 22 18 17 50 50 H 0.97004 * 120.00136 * 180.02562 * 26 25 23 51 51 H 1.09000 * 110.39328 * 280.64421 * 31 16 15 52 52 H 1.09000 * 110.50517 * 158.15212 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 7 2.3478 2.0494 2.3861 6 8 1.7843 2.6815 3.2546 7 6 0.6249 3.1564 2.7894 8 6 -0.3733 3.9904 3.5504 9 6 0.0443 4.5105 4.9274 10 6 -0.9842 3.3824 4.8145 11 7 0.5220 2.7581 1.5444 12 6 1.9954 -0.7661 -1.1375 13 1 1.7223 -0.2844 -2.0764 14 6 3.5284 -0.8997 -1.0299 15 6 3.7933 -2.4178 -0.9373 16 7 2.6032 -3.0445 -1.5680 17 6 2.4512 -4.4398 -1.1345 18 6 1.1605 -5.0177 -1.7185 19 1 0.3199 -4.3808 -1.4428 20 6 1.2696 -5.0783 -3.1852 21 7 1.3539 -5.1251 -4.3171 22 6 0.9361 -6.4263 -1.1651 23 6 -0.3948 -6.9476 -1.6428 24 1 -1.0180 -6.3355 -2.2778 25 6 -0.8163 -8.2063 -1.2698 26 7 -1.9779 -8.6609 -1.6862 27 14 0.2620 -9.2651 -0.1719 28 1 -0.0717 -9.0027 1.2512 29 1 0.0254 -10.6985 -0.4796 30 1 1.6896 -8.9359 -0.4143 31 6 1.4608 -2.2139 -1.1023 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.5611 1.9273 -0.8310 36 1 3.0797 1.3443 -0.1082 37 1 -1.0105 4.6323 2.9420 38 1 1.0412 4.2497 5.2827 39 1 -0.3184 5.4943 5.2250 40 1 -2.0232 3.6245 5.0380 41 1 -0.6643 2.3790 5.0955 42 1 4.0077 -0.4851 -1.9169 43 1 3.8905 -0.3953 -0.1340 44 1 4.6973 -2.6802 -1.4870 45 1 3.8800 -2.7257 0.1046 46 1 3.3020 -5.0240 -1.4851 47 1 2.4071 -4.4794 -0.0461 48 1 1.7310 -7.0850 -1.5150 49 1 0.9439 -6.3942 -0.0757 50 1 -2.2746 -9.5463 -1.4235 51 1 1.1793 -2.4907 -0.0862 52 1 0.6107 -2.3218 -1.7759 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108087686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:01 Heat of formation + Delta-G solvation = 141.489524 kcal Electronic energy + Delta-G solvation = -31553.109876 eV Core-core repulsion = 27364.465153 eV Total energy + Delta-G solvation = -4188.644723 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -45.92861 -39.79874 -38.05453 -37.60721 -36.29803 -35.40943 -33.79261 -32.60820 -32.24729 -30.39526 -29.36932 -27.73872 -26.93258 -25.48828 -25.03274 -23.52520 -23.04760 -22.86996 -21.53316 -21.08481 -20.72627 -20.00912 -18.45336 -17.84570 -17.02324 -16.88717 -16.67929 -16.49185 -16.19988 -15.39923 -15.16803 -14.80329 -14.64738 -14.20591 -14.07929 -13.59862 -13.38068 -13.23334 -13.15815 -12.96462 -12.62172 -12.53528 -12.35718 -12.29337 -12.21772 -12.15785 -12.12234 -11.83745 -11.66175 -11.56351 -11.40885 -11.31152 -11.23671 -11.23245 -11.16423 -11.09919 -10.91308 -10.67873 -10.38407 -10.04766 -9.91766 -9.74304 -9.32402 -8.71803 -8.62002 -8.43016 -6.10826 -4.11420 0.75859 1.79154 2.34714 2.95709 3.24135 3.25795 3.34776 3.35902 3.52229 3.68473 3.70825 3.78090 4.05099 4.15297 4.19443 4.30329 4.38247 4.41304 4.54487 4.69811 4.80563 4.87900 4.95998 4.98676 5.00532 5.15125 5.18433 5.23986 5.28941 5.32336 5.32733 5.38949 5.41500 5.42506 5.48713 5.57172 5.62223 5.65914 5.71888 5.79492 5.84822 5.88202 5.91250 5.96072 6.21997 6.26245 6.58492 6.63947 6.90317 6.94121 7.03755 7.12614 7.63415 7.85327 8.40310 8.54100 8.92529 9.49039 11.02230 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.001972 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.478377 B =14198.355608 C =15492.867496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.531 5.531 3 C 0.142 3.858 4 C 0.183 3.817 5 N -0.367 5.367 6 O 0.077 5.923 7 C 0.207 3.793 8 C -0.081 4.081 9 C -0.159 4.159 10 C -0.152 4.152 11 N -0.474 5.474 12 C 0.081 3.919 13 H 0.058 0.942 14 C -0.120 4.120 15 C 0.037 3.963 16 N -0.511 5.511 17 C 0.050 3.950 18 C 0.019 3.981 19 H 0.104 0.896 20 C 0.252 3.748 21 N -0.470 5.470 22 C -0.005 4.005 23 C -0.527 4.527 24 H 0.074 0.926 25 C 0.071 3.929 26 N -0.897 5.897 27 Si 0.877 3.123 28 H -0.275 1.275 29 H -0.287 1.287 30 H -0.264 1.264 31 C 0.038 3.962 32 H 0.033 0.967 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.149 0.851 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.026 0.974 49 H 0.032 0.968 50 H 0.264 0.736 51 H 0.063 0.937 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.356 29.127 14.282 33.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.257 5.257 3 C 0.013 3.987 4 C -0.090 4.090 5 N -0.074 5.074 6 O 0.018 5.982 7 C -0.013 4.013 8 C -0.101 4.101 9 C -0.196 4.196 10 C -0.190 4.190 11 N -0.208 5.208 12 C -0.027 4.027 13 H 0.076 0.924 14 C -0.158 4.158 15 C -0.091 4.091 16 N -0.235 5.235 17 C -0.079 4.079 18 C -0.002 4.002 19 H 0.121 0.879 20 C -0.065 4.065 21 N -0.146 5.146 22 C -0.044 4.044 23 C -0.565 4.565 24 H 0.092 0.908 25 C -0.131 4.131 26 N -0.535 5.535 27 Si 0.704 3.296 28 H -0.201 1.201 29 H -0.213 1.213 30 H -0.188 1.188 31 C -0.091 4.091 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.167 0.833 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.101 0.899 47 H 0.074 0.926 48 H 0.044 0.956 49 H 0.050 0.950 50 H 0.074 0.926 51 H 0.081 0.919 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.165 28.178 12.037 31.711 hybrid contribution -0.164 -0.288 1.206 1.251 sum 8.001 27.890 13.243 31.894 Atomic orbital electron populations 1.22475 0.86148 1.02913 1.01223 1.62072 1.08929 1.11035 1.43636 1.20291 1.01714 0.88451 0.88236 1.25587 0.87969 0.98132 0.97315 1.74666 1.20372 1.13224 0.99145 1.85289 1.28001 1.48943 1.35999 1.27629 0.88174 0.95979 0.89501 1.20323 0.98141 1.01644 0.89989 1.23194 1.01174 0.99850 0.95430 1.23201 0.99918 0.99271 0.96643 1.71867 1.21779 1.14471 1.12684 1.22405 0.95158 0.94133 0.91013 0.92439 1.22436 0.94355 0.96689 1.02326 1.23035 0.94739 0.93361 0.97959 1.65496 1.02225 1.01918 1.53894 1.22440 0.98393 0.88601 0.98487 1.18979 0.97456 1.01423 0.82384 0.87868 1.28683 0.91902 0.91255 0.94674 1.80997 1.09845 1.10562 1.13207 1.19646 0.98770 0.89466 0.96550 1.21011 1.01758 1.01585 1.32133 0.90814 1.24990 0.94846 0.97571 0.95728 1.69904 1.19879 1.18513 1.45166 0.86820 0.81696 0.79920 0.81160 1.20059 1.21288 1.18831 1.23230 0.94931 0.90621 1.00269 0.94803 0.90318 0.91410 0.91325 0.87742 0.83312 0.87418 0.86834 0.86700 0.87756 0.90881 0.90331 0.90146 0.93329 0.89879 0.92584 0.95596 0.94974 0.92568 0.91864 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.12 60.06 0.55 0.76 16 2 N -0.53 -5.55 4.53 -234.68 -1.06 -6.61 16 3 C 0.14 1.36 5.37 -4.98 -0.03 1.33 16 4 C 0.18 2.02 6.82 -156.37 -1.07 0.95 16 5 N -0.37 -4.29 12.16 30.90 0.38 -3.91 16 6 O 0.08 0.77 11.08 18.10 0.20 0.97 16 7 C 0.21 1.79 7.97 -13.06 -0.10 1.69 16 8 C -0.08 -0.39 6.33 -91.77 -0.58 -0.97 16 9 C -0.16 -0.46 10.18 -26.69 -0.27 -0.73 16 10 C -0.15 -0.53 10.24 -26.69 -0.27 -0.80 16 11 N -0.47 -5.03 10.85 -9.87 -0.11 -5.14 16 12 C 0.08 0.85 2.79 -66.33 -0.18 0.66 16 13 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 14 C -0.12 -1.14 6.01 -25.35 -0.15 -1.29 16 15 C 0.04 0.40 6.49 -2.18 -0.01 0.39 16 16 N -0.51 -6.77 5.15 -229.82 -1.18 -7.95 16 17 C 0.05 0.72 4.27 -3.83 -0.02 0.70 16 18 C 0.02 0.35 2.07 -93.41 -0.19 0.16 16 19 H 0.10 1.79 6.69 -51.93 -0.35 1.44 16 20 C 0.25 5.29 13.67 -20.76 -0.28 5.00 16 21 N -0.47 -10.79 18.54 42.15 0.78 -10.01 16 22 C -0.01 -0.12 3.49 -27.88 -0.10 -0.21 16 23 C -0.53 -14.28 9.15 -34.44 -0.32 -14.59 16 24 H 0.07 2.19 7.84 -52.49 -0.41 1.78 16 25 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 26 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 27 Si 0.88 20.79 27.47 -169.99 -4.67 16.12 16 28 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 31 C 0.04 0.46 3.69 -2.09 -0.01 0.45 16 32 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.83 6.65 -51.93 -0.35 0.49 16 34 H 0.07 0.76 6.74 -51.93 -0.35 0.41 16 35 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 36 H 0.10 0.89 6.31 -51.93 -0.33 0.56 16 37 H 0.15 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.11 0.35 8.01 -51.93 -0.42 -0.07 16 39 H 0.11 0.13 8.14 -51.93 -0.42 -0.30 16 40 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.72 6.71 -51.93 -0.35 0.37 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.52 7.91 -51.93 -0.41 0.11 16 46 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.06 0.73 7.98 -51.93 -0.41 0.32 16 48 H 0.03 0.57 7.20 -51.93 -0.37 0.20 16 49 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 50 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 51 H 0.06 0.79 7.42 -51.93 -0.39 0.41 16 52 H 0.08 1.10 7.56 -51.93 -0.39 0.71 16 LS Contribution 421.92 15.07 6.36 6.36 Total: -1.00 -33.68 421.92 -9.98 -43.66 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -8.31 Total: -2.51 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -3.14 Total: -4.60 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.42 Total: -60.00 kcal Atomic # 8 Polarization: 0.77 SS G_CDS: 0.20 Total: 0.97 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.68 -9.98 -43.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108087686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.148 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds