Wall clock time and date at job start Tue Mar 31 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46895 * 111.00149 * 2 1 4 4 C 1.50692 * 109.47679 * 66.04408 * 3 2 1 5 5 N 1.29948 * 126.28885 * 90.02377 * 4 3 2 6 6 O 1.21302 * 110.25070 * 180.02562 * 5 4 3 7 7 C 1.33644 * 109.81116 * 0.02562 * 6 5 4 8 8 C 1.50698 * 126.54850 * 179.97438 * 7 6 5 9 9 C 1.53008 * 117.50079 * 8.76875 * 8 7 6 10 10 C 1.53000 * 117.50149 * 300.10997 * 8 7 6 11 11 N 1.31124 * 106.89813 * 359.97438 * 7 6 5 12 12 C 1.46899 * 111.00209 * 236.03971 * 2 1 3 13 13 H 1.09007 * 110.28567 * 64.65609 * 12 2 1 14 14 C 1.54256 * 110.32548 * 186.78344 * 12 2 1 15 15 C 1.54387 * 105.06050 * 118.89871 * 14 12 2 16 16 N 1.48561 * 104.59083 * 23.85454 * 15 14 12 17 17 C 1.46899 * 110.99627 * 200.96100 * 16 15 14 18 18 C 1.52999 * 109.47597 * 175.72867 * 17 16 15 19 19 H 1.09002 * 109.46762 * 305.14398 * 18 17 16 20 20 C 1.47201 * 109.46746 * 65.13583 * 18 17 16 21 21 N 6.70204 * 89.01661 * 220.10895 * 2 1 3 22 22 C 1.52994 * 109.47653 * 185.13937 * 18 17 16 23 23 C 1.50705 * 109.47168 * 175.00063 * 22 18 17 24 24 H 1.07992 * 119.99558 * 0.02562 * 23 22 18 25 25 C 1.37876 * 119.99754 * 179.97438 * 23 22 18 26 26 N 1.31509 * 119.99690 * 179.97438 * 25 23 22 27 27 Si 1.86795 * 120.00111 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47295 * 89.99775 * 27 25 23 29 29 H 1.48500 * 109.47293 * 209.99523 * 27 25 23 30 30 H 1.48496 * 109.47243 * 329.99631 * 27 25 23 31 31 C 1.48724 * 104.28766 * 320.56859 * 16 15 14 32 32 H 1.08999 * 109.47083 * 60.00265 * 1 2 3 33 33 H 1.08998 * 109.47728 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47517 * 300.00338 * 1 2 3 35 35 H 1.09003 * 109.47109 * 306.04050 * 3 2 1 36 36 H 1.09001 * 109.47153 * 186.04608 * 3 2 1 37 37 H 1.09001 * 115.55069 * 154.43555 * 8 7 6 38 38 H 1.08994 * 117.49703 * 0.02562 * 9 8 7 39 39 H 1.09003 * 117.49428 * 145.01526 * 9 8 7 40 40 H 1.09003 * 117.50265 * 214.98064 * 10 8 7 41 41 H 1.08998 * 117.49381 * 359.97438 * 10 8 7 42 42 H 1.09003 * 110.32426 * 237.79383 * 14 12 2 43 43 H 1.08997 * 110.32434 * 359.90286 * 14 12 2 44 44 H 1.09000 * 110.41051 * 142.62961 * 15 14 12 45 45 H 1.08996 * 110.41178 * 264.95616 * 15 14 12 46 46 H 1.09006 * 109.47297 * 295.73117 * 17 16 15 47 47 H 1.09001 * 109.47234 * 55.72914 * 17 16 15 48 48 H 1.09004 * 109.46687 * 294.99822 * 22 18 17 49 49 H 1.08994 * 109.47363 * 54.99723 * 22 18 17 50 50 H 0.97004 * 120.00136 * 180.02562 * 26 25 23 51 51 H 1.09000 * 110.39328 * 280.64421 * 31 16 15 52 52 H 1.09000 * 110.50517 * 158.15212 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 7 2.3478 2.0494 2.3861 6 8 1.7843 2.6815 3.2546 7 6 0.6249 3.1564 2.7894 8 6 -0.3733 3.9904 3.5504 9 6 0.0443 4.5105 4.9274 10 6 -0.9842 3.3824 4.8145 11 7 0.5220 2.7581 1.5444 12 6 1.9954 -0.7661 -1.1375 13 1 1.7223 -0.2844 -2.0764 14 6 3.5284 -0.8997 -1.0299 15 6 3.7933 -2.4178 -0.9373 16 7 2.6032 -3.0445 -1.5680 17 6 2.4512 -4.4398 -1.1345 18 6 1.1605 -5.0177 -1.7185 19 1 0.3199 -4.3808 -1.4428 20 6 1.2696 -5.0783 -3.1852 21 7 1.3539 -5.1251 -4.3171 22 6 0.9361 -6.4263 -1.1651 23 6 -0.3948 -6.9476 -1.6428 24 1 -1.0180 -6.3355 -2.2778 25 6 -0.8163 -8.2063 -1.2698 26 7 -1.9779 -8.6609 -1.6862 27 14 0.2620 -9.2651 -0.1719 28 1 -0.0717 -9.0027 1.2512 29 1 0.0254 -10.6985 -0.4796 30 1 1.6896 -8.9359 -0.4143 31 6 1.4608 -2.2139 -1.1023 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.5611 1.9273 -0.8310 36 1 3.0797 1.3443 -0.1082 37 1 -1.0105 4.6323 2.9420 38 1 1.0412 4.2497 5.2827 39 1 -0.3184 5.4943 5.2250 40 1 -2.0232 3.6245 5.0380 41 1 -0.6643 2.3790 5.0955 42 1 4.0077 -0.4851 -1.9169 43 1 3.8905 -0.3953 -0.1340 44 1 4.6973 -2.6802 -1.4870 45 1 3.8800 -2.7257 0.1046 46 1 3.3020 -5.0240 -1.4851 47 1 2.4071 -4.4794 -0.0461 48 1 1.7310 -7.0850 -1.5150 49 1 0.9439 -6.3942 -0.0757 50 1 -2.2746 -9.5463 -1.4235 51 1 1.1793 -2.4907 -0.0862 52 1 0.6107 -2.3218 -1.7759 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108087686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:00 Heat of formation + Delta-G solvation = 117.372239 kcal Electronic energy + Delta-G solvation = -31554.155680 eV Core-core repulsion = 27364.465153 eV Total energy + Delta-G solvation = -4189.690527 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -46.67821 -40.72224 -38.73926 -38.38009 -37.52172 -36.37757 -35.52121 -34.11052 -33.23529 -31.67659 -30.20457 -28.73946 -28.35611 -26.19772 -25.89673 -24.44696 -23.89169 -23.29401 -23.24791 -22.01139 -21.49281 -20.81779 -19.21629 -18.94369 -18.52685 -18.18117 -17.56393 -17.27061 -17.16466 -16.34272 -16.16996 -15.69415 -15.60966 -15.47078 -15.28612 -14.90769 -14.50185 -14.31098 -14.10798 -14.03712 -13.97218 -13.81316 -13.46265 -13.22089 -13.18302 -13.06038 -13.00402 -12.94100 -12.73727 -12.63553 -12.44494 -12.32516 -12.27813 -12.17663 -12.03938 -11.98700 -11.84765 -11.74169 -11.64814 -11.51871 -11.47743 -11.25596 -10.74399 -10.66916 -9.52742 -9.41606 -8.25972 -6.31640 0.06746 1.04452 1.41090 1.44147 1.54432 1.75101 2.01676 2.09128 2.37270 2.39680 2.71560 2.85955 2.99929 3.09451 3.16950 3.30307 3.55571 3.67655 3.71224 3.77563 3.93531 4.06139 4.07756 4.17262 4.27225 4.29808 4.33564 4.37406 4.48765 4.49834 4.58567 4.64313 4.65298 4.71573 4.78580 4.79198 4.87021 4.87784 4.91102 4.94368 4.97915 5.01655 5.05960 5.09511 5.16094 5.19829 5.21767 5.40989 5.61121 5.73258 5.77677 6.02206 6.05498 6.25051 6.75161 6.87064 7.12231 7.32636 8.90867 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.001972 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.478377 B =14198.355608 C =15492.867496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.535 5.535 3 C 0.144 3.856 4 C 0.177 3.823 5 N -0.390 5.390 6 O 0.072 5.928 7 C 0.215 3.785 8 C -0.099 4.099 9 C -0.143 4.143 10 C -0.148 4.148 11 N -0.499 5.499 12 C 0.087 3.913 13 H 0.057 0.943 14 C -0.112 4.112 15 C 0.038 3.962 16 N -0.526 5.526 17 C 0.060 3.940 18 C 0.025 3.975 19 H 0.109 0.891 20 C 0.263 3.737 21 N -0.511 5.511 22 C -0.003 4.003 23 C -0.530 4.530 24 H 0.028 0.972 25 C 0.003 3.997 26 N -0.953 5.953 27 Si 0.948 3.052 28 H -0.258 1.258 29 H -0.294 1.294 30 H -0.237 1.237 31 C 0.038 3.962 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.163 0.837 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.029 0.971 49 H 0.060 0.940 50 H 0.265 0.735 51 H 0.061 0.939 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.281 30.413 16.629 35.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.261 5.261 3 C 0.015 3.985 4 C -0.097 4.097 5 N -0.099 5.099 6 O 0.014 5.986 7 C -0.004 4.004 8 C -0.119 4.119 9 C -0.181 4.181 10 C -0.187 4.187 11 N -0.233 5.233 12 C -0.022 4.022 13 H 0.075 0.925 14 C -0.150 4.150 15 C -0.089 4.089 16 N -0.251 5.251 17 C -0.069 4.069 18 C 0.003 3.997 19 H 0.126 0.874 20 C -0.054 4.054 21 N -0.188 5.188 22 C -0.042 4.042 23 C -0.568 4.568 24 H 0.047 0.953 25 C -0.194 4.194 26 N -0.593 5.593 27 Si 0.771 3.229 28 H -0.182 1.182 29 H -0.221 1.221 30 H -0.160 1.160 31 C -0.090 4.090 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.134 0.866 37 H 0.180 0.820 38 H 0.121 0.879 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.072 0.928 46 H 0.107 0.893 47 H 0.095 0.905 48 H 0.047 0.953 49 H 0.078 0.922 50 H 0.074 0.926 51 H 0.079 0.921 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.106 29.505 14.397 34.351 hybrid contribution -0.878 -0.589 0.455 1.151 sum 9.228 28.916 14.852 33.792 Atomic orbital electron populations 1.22383 0.86470 1.02468 1.00863 1.62051 1.08710 1.11709 1.43631 1.20350 1.02362 0.87858 0.87924 1.25839 0.88070 0.98144 0.97600 1.74634 1.21323 1.14384 0.99606 1.85249 1.28514 1.49101 1.35752 1.28382 0.87883 0.94894 0.89243 1.20642 0.98213 1.02253 0.90759 1.23320 1.00880 1.00757 0.93134 1.23299 1.01193 0.99058 0.95112 1.71875 1.22094 1.15493 1.13821 1.22322 0.95852 0.93010 0.90975 0.92526 1.22407 0.93406 0.96028 1.03202 1.23096 0.93861 0.93779 0.98186 1.65461 1.03406 1.01515 1.54697 1.22313 0.96030 0.89291 0.99304 1.19051 1.00145 0.99996 0.80483 0.87366 1.29324 0.90584 0.90098 0.95358 1.80991 1.11486 1.11802 1.14569 1.19589 0.95420 0.91098 0.98071 1.21359 1.03533 1.01137 1.30806 0.95346 1.26038 0.96297 0.99378 0.97676 1.70085 1.22446 1.19192 1.47585 0.85692 0.80775 0.77023 0.79432 1.18236 1.22050 1.16035 1.23179 0.94441 0.91729 0.99629 0.94591 0.90752 0.92303 0.90703 0.86622 0.81964 0.87873 0.84444 0.84764 0.88893 0.89773 0.89665 0.89330 0.92762 0.89265 0.90484 0.95260 0.92200 0.92632 0.92062 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.12 127.69 1.16 1.71 16 2 N -0.53 -10.64 4.53 -896.39 -4.06 -14.70 16 3 C 0.14 2.61 5.37 85.56 0.46 3.07 16 4 C 0.18 3.81 6.82 138.46 0.94 4.76 16 5 N -0.39 -8.97 12.16 -60.31 -0.73 -9.70 16 6 O 0.07 1.41 11.08 74.83 0.83 2.24 16 7 C 0.22 3.61 7.97 88.38 0.70 4.32 16 8 C -0.10 -0.82 6.33 -11.54 -0.07 -0.89 16 9 C -0.14 -0.53 10.18 30.62 0.31 -0.22 16 10 C -0.15 -0.78 10.24 30.62 0.31 -0.46 16 11 N -0.50 -10.45 10.85 -303.20 -3.29 -13.74 16 12 C 0.09 1.69 2.79 45.81 0.13 1.82 16 13 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 14 C -0.11 -1.87 6.01 31.49 0.19 -1.68 16 15 C 0.04 0.72 6.49 86.45 0.56 1.29 16 16 N -0.53 -12.87 5.15 -881.03 -4.53 -17.40 16 17 C 0.06 1.56 4.27 86.30 0.37 1.93 16 18 C 0.03 0.88 2.07 -12.60 -0.03 0.85 16 19 H 0.11 3.70 6.69 -2.39 -0.02 3.68 16 20 C 0.26 10.99 13.67 89.44 1.22 12.22 16 21 N -0.51 -23.75 18.54 20.01 0.37 -23.38 16 22 C 0.00 -0.11 3.49 29.85 0.10 -0.01 16 23 C -0.53 -29.04 9.15 25.60 0.23 -28.80 16 24 H 0.03 1.76 7.84 -2.91 -0.02 1.74 16 25 C 0.00 0.16 5.47 84.66 0.46 0.63 16 26 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 27 Si 0.95 41.95 27.47 68.60 1.88 43.84 16 28 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 29 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 30 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 31 C 0.04 0.90 3.69 86.42 0.32 1.21 16 32 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 1.57 6.65 -2.39 -0.02 1.56 16 34 H 0.06 1.32 6.74 -2.39 -0.02 1.30 16 35 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 36 H 0.12 1.79 6.31 -2.39 -0.02 1.78 16 37 H 0.16 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 0.51 8.01 -2.39 -0.02 0.49 16 39 H 0.14 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.34 6.71 -2.39 -0.02 1.33 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.05 0.98 7.91 -2.39 -0.02 0.97 16 46 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 47 H 0.08 1.72 7.98 -2.39 -0.02 1.70 16 48 H 0.03 1.21 7.20 -2.38 -0.02 1.19 16 49 H 0.06 2.20 7.57 -2.39 -0.02 2.18 16 50 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 51 H 0.06 1.45 7.42 -2.39 -0.02 1.43 16 52 H 0.07 1.82 7.56 -2.39 -0.02 1.80 16 Total: -1.00 -75.10 421.92 -0.98 -76.08 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.87 Total: 14.11 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 7.39 Total: 1.72 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -11.95 Total: -137.99 kcal Atomic # 8 Polarization: 1.41 SS G_CDS: 0.83 Total: 2.24 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.88 Total: 43.84 kcal Total: -75.10 -0.98 -76.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108087686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.451 kcal (2) G-P(sol) polarization free energy of solvation -75.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds