Wall clock time and date at job start Tue Mar 31 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76197 * 103.00333 * 2 1 4 4 C 1.39169 * 119.65189 * 180.23505 * 3 2 1 5 5 C 1.39483 * 118.92427 * 180.26715 * 4 3 2 6 6 C 1.48121 * 120.87836 * 179.77885 * 5 4 3 7 7 O 1.21537 * 120.00391 * 359.72199 * 6 5 4 8 8 N 1.34780 * 119.99966 * 179.71902 * 6 5 4 9 9 C 1.40047 * 119.99877 * 185.53293 * 8 6 5 10 10 C 1.38674 * 120.10209 * 24.83105 * 9 8 6 11 11 C 1.38245 * 120.00419 * 179.72831 * 10 9 8 12 12 C 1.38304 * 120.21240 * 0.29367 * 11 10 9 13 13 C 1.38195 * 120.20596 * 359.97438 * 12 11 10 14 14 C 1.38784 * 119.99494 * 0.02562 * 13 12 11 15 15 S 1.76202 * 120.11021 * 179.97438 * 14 13 12 16 16 C 1.81400 * 102.99886 * 0.02562 * 15 14 13 17 17 C 1.50696 * 109.47007 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00067 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00077 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00165 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00182 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47209 * 59.99888 * 21 19 17 23 23 H 1.48510 * 109.47006 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47119 * 299.99620 * 21 19 17 25 25 C 1.40066 * 118.24467 * 359.50532 * 5 4 3 26 26 C 1.37935 * 119.18083 * 0.25124 * 25 5 4 27 27 N 1.31917 * 121.01029 * 359.97438 * 26 25 5 28 28 H 1.09001 * 109.46940 * 59.99703 * 1 2 3 29 29 H 1.09000 * 109.47148 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47015 * 300.00594 * 1 2 3 31 31 H 1.08003 * 120.53451 * 0.04890 * 4 3 2 32 32 H 0.96995 * 120.00099 * 5.53058 * 8 6 5 33 33 H 1.07996 * 119.99744 * 359.97438 * 10 9 8 34 34 H 1.07999 * 119.89187 * 180.27335 * 11 10 9 35 35 H 1.08003 * 119.89715 * 179.97438 * 12 11 10 36 36 H 1.08001 * 120.00676 * 180.02562 * 13 12 11 37 37 H 1.08997 * 109.46991 * 299.99840 * 16 15 14 38 38 H 1.09005 * 109.47348 * 59.99501 * 16 15 14 39 39 H 0.96997 * 120.00678 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.40793 * 180.22541 * 25 5 4 41 41 H 1.08000 * 119.50015 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 3.5438 2.1155 -0.0050 5 6 3.8404 3.4784 0.0008 6 6 5.2443 3.9509 0.0008 7 8 6.1560 3.1473 0.0008 8 7 5.5106 5.2721 0.0007 9 6 6.8324 5.7200 -0.1163 10 6 7.7860 4.9205 -0.7283 11 6 9.0890 5.3669 -0.8477 12 6 9.4476 6.6076 -0.3529 13 6 8.5056 7.4092 0.2635 14 6 7.1951 6.9695 0.3880 15 16 5.9918 7.9888 1.1739 16 6 6.9422 9.4653 1.6291 17 6 6.0375 10.4509 2.3227 18 1 4.9951 10.2127 2.4749 19 6 6.5407 11.6563 2.7640 20 7 7.8102 11.9462 2.5792 21 14 5.4195 12.8777 3.6244 22 1 4.8555 12.2546 4.8487 23 1 6.1978 14.0860 3.9981 24 1 4.3140 13.2634 2.7110 25 6 2.7757 4.3885 0.0007 26 6 1.4820 3.9100 0.0003 27 7 1.2368 2.6138 -0.0006 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.3361 1.3815 -0.0096 32 1 4.7869 5.9128 0.0816 33 1 7.5099 3.9507 -1.1152 34 1 9.8292 4.7446 -1.3285 35 1 10.4671 6.9512 -0.4486 36 1 8.7891 8.3777 0.6483 37 1 7.7538 9.1825 2.2994 38 1 7.3559 9.9225 0.7303 39 1 8.1643 12.7940 2.8900 40 1 2.9654 5.4517 0.0014 41 1 0.6571 4.6071 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108199205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:37 Heat of formation + Delta-G solvation = 25.083315 kcal Electronic energy + Delta-G solvation = -25322.432802 eV Core-core repulsion = 21612.568467 eV Total energy + Delta-G solvation = -3709.864335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.071 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.08441 -39.84091 -38.13544 -34.96641 -33.34991 -33.16386 -31.72534 -30.83889 -29.55455 -29.13739 -28.66820 -25.37660 -24.09864 -23.51099 -22.86010 -22.18820 -20.74156 -18.99635 -17.87269 -17.23779 -16.86924 -16.34802 -16.20350 -16.05658 -15.52254 -15.29962 -15.09115 -14.66957 -14.56713 -14.30824 -14.27172 -14.05403 -13.65215 -13.42242 -13.09741 -13.09129 -12.98493 -12.43998 -12.33749 -12.22082 -11.87801 -11.35457 -10.98141 -10.92176 -10.85247 -10.59706 -10.48910 -10.33693 -10.15680 -10.12119 -9.82546 -9.77810 -9.31414 -9.25443 -8.70236 -8.11425 -7.97114 -6.69647 -6.33692 -4.40144 0.23299 0.58507 1.03473 1.46303 1.61898 1.85834 2.26334 2.58781 2.82413 3.18950 3.23301 3.25895 3.38012 3.49884 4.01755 4.12432 4.17717 4.23386 4.54156 4.58748 4.66707 4.80770 4.82948 5.03862 5.16654 5.24480 5.25976 5.35083 5.41529 5.48442 5.59385 5.68050 5.73755 6.03430 6.10412 6.35514 6.45684 6.60518 6.78093 6.86612 6.89946 7.18448 7.24647 7.27921 7.58006 7.80901 7.85562 8.60296 9.24252 10.77287 Molecular weight = 360.07amu Principal moments of inertia in cm(-1) A = 0.011246 B = 0.002336 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.161029 B =11985.514248 C =14295.363107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.070 6.070 3 C 0.114 3.886 4 C -0.090 4.090 5 C -0.067 4.067 6 C 0.558 3.442 7 O -0.510 6.510 8 N -0.648 5.648 9 C 0.146 3.854 10 C -0.115 4.115 11 C -0.121 4.121 12 C -0.114 4.114 13 C -0.114 4.114 14 C -0.093 4.093 15 S -0.173 6.173 16 C 0.080 3.920 17 C -0.522 4.522 18 H 0.068 0.932 19 C 0.069 3.931 20 N -0.888 5.888 21 Si 0.909 3.091 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.145 4.145 26 C 0.117 3.883 27 N -0.476 5.476 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.414 0.586 33 H 0.143 0.857 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.269 0.731 40 H 0.146 0.854 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.718 -19.090 -7.705 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.169 5.831 3 C -0.135 4.135 4 C -0.117 4.117 5 C -0.080 4.080 6 C 0.346 3.654 7 O -0.385 6.385 8 N -0.293 5.293 9 C 0.045 3.955 10 C -0.137 4.137 11 C -0.143 4.143 12 C -0.135 4.135 13 C -0.139 4.139 14 C -0.208 4.208 15 S 0.074 5.926 16 C -0.067 4.067 17 C -0.561 4.561 18 H 0.086 0.914 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.735 3.265 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.169 4.169 26 C -0.043 4.043 27 N -0.190 5.190 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.172 0.828 32 H 0.253 0.747 33 H 0.161 0.839 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.154 0.846 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.164 0.836 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -10.450 -20.979 -7.415 24.583 hybrid contribution 0.545 2.868 0.347 2.940 sum -9.905 -18.110 -7.069 21.819 Atomic orbital electron populations 1.23482 0.93500 1.06220 1.06849 1.85661 1.07950 0.98076 1.91373 1.23015 0.91579 0.98857 1.00026 1.21752 0.96240 0.95589 0.98074 1.20141 0.93233 0.94040 1.00568 1.18127 0.88198 0.82189 0.76922 1.90755 1.45816 1.54146 1.47819 1.43330 1.08117 1.07210 1.70605 1.17166 0.83993 0.93516 1.00793 1.21207 0.92690 1.00502 0.99282 1.20956 0.95752 0.96283 1.01313 1.21068 0.99230 0.94379 0.98800 1.21242 0.91412 1.00890 1.00346 1.21811 0.98508 0.97459 1.03027 1.84983 1.19006 1.19293 1.69360 1.21372 0.96885 0.88517 0.99930 1.20551 0.95979 1.00468 1.39101 0.91397 1.24948 0.95417 0.97729 0.95498 1.69925 1.12890 1.24086 1.45613 0.86376 0.80244 0.79885 0.79962 1.19825 1.20925 1.19812 1.22383 0.93350 1.01090 1.00055 1.22709 0.96053 0.91310 0.94199 1.67917 1.34989 1.02968 1.13111 0.89343 0.87768 0.89311 0.82832 0.74698 0.83903 0.85964 0.85958 0.84570 0.93629 0.93645 0.92180 0.83633 0.81368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 10.01 101.05 1.01 0.19 16 2 S -0.07 -0.61 22.55 -107.50 -2.42 -3.04 16 3 C 0.11 1.22 7.00 -16.96 -0.12 1.10 16 4 C -0.09 -1.02 9.41 -38.77 -0.36 -1.38 16 5 C -0.07 -0.78 5.90 -104.69 -0.62 -1.40 16 6 C 0.56 7.85 7.60 -12.20 -0.09 7.76 16 7 O -0.51 -8.30 13.61 5.33 0.07 -8.23 16 8 N -0.65 -9.36 5.12 -10.48 -0.05 -9.42 16 9 C 0.15 2.43 6.44 -83.45 -0.54 1.89 16 10 C -0.12 -1.81 8.72 -39.42 -0.34 -2.15 16 11 C -0.12 -1.73 10.04 -39.55 -0.40 -2.13 16 12 C -0.11 -1.72 10.04 -39.57 -0.40 -2.12 16 13 C -0.11 -2.03 9.36 -39.40 -0.37 -2.40 16 14 C -0.09 -1.71 6.12 -38.89 -0.24 -1.94 16 15 S -0.17 -3.46 20.56 -107.50 -2.21 -5.67 16 16 C 0.08 1.93 4.09 36.00 0.15 2.07 16 17 C -0.52 -13.77 9.13 -34.44 -0.31 -14.09 16 18 H 0.07 1.76 7.71 -52.48 -0.40 1.36 16 19 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 20 N -0.89 -24.58 13.29 55.43 0.74 -23.85 16 21 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 C -0.15 -1.39 9.61 -39.01 -0.37 -1.76 16 26 C 0.12 1.04 11.16 -17.63 -0.20 0.84 16 27 N -0.48 -4.94 9.40 -12.16 -0.11 -5.05 16 28 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.10 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.15 1.69 7.74 -52.48 -0.41 1.29 16 32 H 0.41 5.37 5.81 -40.82 -0.24 5.14 16 33 H 0.14 2.20 5.78 -52.49 -0.30 1.90 16 34 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 36 H 0.14 2.57 5.88 -52.49 -0.31 2.26 16 37 H 0.05 1.16 7.75 -51.93 -0.40 0.76 16 38 H 0.05 1.14 7.75 -51.92 -0.40 0.74 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.15 1.14 6.54 -52.49 -0.34 0.79 16 41 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 377.34 15.07 5.69 5.69 Total: -1.00 -30.15 377.34 -11.11 -41.25 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.48 Total: 6.76 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.30 Total: -13.78 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.57 Total: -38.32 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.07 Total: -8.23 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: -4.07 SS G_CDS: -4.63 Total: -8.70 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.15 -11.11 -41.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108199205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.338 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds