Wall clock time and date at job start Tue Mar 31 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76197 * 103.00333 * 2 1 4 4 C 1.39169 * 119.65189 * 180.23505 * 3 2 1 5 5 C 1.39483 * 118.92427 * 180.26715 * 4 3 2 6 6 C 1.48121 * 120.87836 * 179.77885 * 5 4 3 7 7 O 1.21537 * 120.00391 * 359.72199 * 6 5 4 8 8 N 1.34780 * 119.99966 * 179.71902 * 6 5 4 9 9 C 1.40047 * 119.99877 * 185.53293 * 8 6 5 10 10 C 1.38674 * 120.10209 * 24.83105 * 9 8 6 11 11 C 1.38245 * 120.00419 * 179.72831 * 10 9 8 12 12 C 1.38304 * 120.21240 * 0.29367 * 11 10 9 13 13 C 1.38195 * 120.20596 * 359.97438 * 12 11 10 14 14 C 1.38784 * 119.99494 * 0.02562 * 13 12 11 15 15 S 1.76202 * 120.11021 * 179.97438 * 14 13 12 16 16 C 1.81400 * 102.99886 * 0.02562 * 15 14 13 17 17 C 1.50696 * 109.47007 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00067 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00077 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00165 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00182 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47209 * 59.99888 * 21 19 17 23 23 H 1.48510 * 109.47006 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47119 * 299.99620 * 21 19 17 25 25 C 1.40066 * 118.24467 * 359.50532 * 5 4 3 26 26 C 1.37935 * 119.18083 * 0.25124 * 25 5 4 27 27 N 1.31917 * 121.01029 * 359.97438 * 26 25 5 28 28 H 1.09001 * 109.46940 * 59.99703 * 1 2 3 29 29 H 1.09000 * 109.47148 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47015 * 300.00594 * 1 2 3 31 31 H 1.08003 * 120.53451 * 0.04890 * 4 3 2 32 32 H 0.96995 * 120.00099 * 5.53058 * 8 6 5 33 33 H 1.07996 * 119.99744 * 359.97438 * 10 9 8 34 34 H 1.07999 * 119.89187 * 180.27335 * 11 10 9 35 35 H 1.08003 * 119.89715 * 179.97438 * 12 11 10 36 36 H 1.08001 * 120.00676 * 180.02562 * 13 12 11 37 37 H 1.08997 * 109.46991 * 299.99840 * 16 15 14 38 38 H 1.09005 * 109.47348 * 59.99501 * 16 15 14 39 39 H 0.96997 * 120.00678 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.40793 * 180.22541 * 25 5 4 41 41 H 1.08000 * 119.50015 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 3.5438 2.1155 -0.0050 5 6 3.8404 3.4784 0.0008 6 6 5.2443 3.9509 0.0008 7 8 6.1560 3.1473 0.0008 8 7 5.5106 5.2721 0.0007 9 6 6.8324 5.7200 -0.1163 10 6 7.7860 4.9205 -0.7283 11 6 9.0890 5.3669 -0.8477 12 6 9.4476 6.6076 -0.3529 13 6 8.5056 7.4092 0.2635 14 6 7.1951 6.9695 0.3880 15 16 5.9918 7.9888 1.1739 16 6 6.9422 9.4653 1.6291 17 6 6.0375 10.4509 2.3227 18 1 4.9951 10.2127 2.4749 19 6 6.5407 11.6563 2.7640 20 7 7.8102 11.9462 2.5792 21 14 5.4195 12.8777 3.6244 22 1 4.8555 12.2546 4.8487 23 1 6.1978 14.0860 3.9981 24 1 4.3140 13.2634 2.7110 25 6 2.7757 4.3885 0.0007 26 6 1.4820 3.9100 0.0003 27 7 1.2368 2.6138 -0.0006 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.3361 1.3815 -0.0096 32 1 4.7869 5.9128 0.0816 33 1 7.5099 3.9507 -1.1152 34 1 9.8292 4.7446 -1.3285 35 1 10.4671 6.9512 -0.4486 36 1 8.7891 8.3777 0.6483 37 1 7.7538 9.1825 2.2994 38 1 7.3559 9.9225 0.7303 39 1 8.1643 12.7940 2.8900 40 1 2.9654 5.4517 0.0014 41 1 0.6571 4.6071 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108199205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:36 Heat of formation + Delta-G solvation = 9.571199 kcal Electronic energy + Delta-G solvation = -25323.105458 eV Core-core repulsion = 21612.568467 eV Total energy + Delta-G solvation = -3710.536991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.071 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.12011 -40.80809 -39.34867 -36.17401 -35.33622 -34.06294 -32.50460 -32.18778 -30.77187 -30.53262 -29.72803 -26.35626 -25.42400 -24.84390 -24.16120 -23.38836 -21.86339 -20.05474 -19.19254 -18.43107 -18.16175 -17.80829 -17.11246 -17.00036 -16.80000 -16.64515 -16.19132 -15.91924 -15.59448 -15.36316 -15.20038 -14.92736 -14.81006 -14.73810 -14.61690 -14.25901 -14.21555 -13.92946 -13.60026 -13.18588 -12.95422 -12.82710 -12.74235 -12.56597 -11.95519 -11.73654 -11.66648 -11.55773 -11.36032 -11.24881 -11.02080 -10.93556 -10.86901 -10.78789 -10.54893 -9.39525 -8.66364 -8.35980 -8.23751 -6.50425 -0.66267 -0.19614 0.20349 0.31701 0.34699 0.72133 1.27025 1.41338 1.43539 1.51996 1.54340 1.67175 1.80142 2.35147 2.53224 2.75118 2.99571 3.16911 3.43192 3.74818 3.78452 3.81526 3.92888 4.12366 4.29471 4.34374 4.37697 4.41880 4.43523 4.52233 4.56145 4.80000 4.81523 4.85544 4.89431 4.93993 5.09086 5.20974 5.31406 5.37034 5.50829 5.53814 5.80837 5.94721 6.12212 6.49906 6.56381 6.72151 7.18467 8.75663 Molecular weight = 360.07amu Principal moments of inertia in cm(-1) A = 0.011246 B = 0.002336 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.161029 B =11985.514248 C =14295.363107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.081 6.081 3 C 0.105 3.895 4 C -0.101 4.101 5 C -0.080 4.080 6 C 0.562 3.438 7 O -0.535 6.535 8 N -0.647 5.647 9 C 0.145 3.855 10 C -0.123 4.123 11 C -0.105 4.105 12 C -0.112 4.112 13 C -0.131 4.131 14 C -0.119 4.119 15 S -0.153 6.153 16 C 0.082 3.918 17 C -0.541 4.541 18 H 0.069 0.931 19 C 0.018 3.982 20 N -0.921 5.921 21 Si 0.976 3.024 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.263 1.263 25 C -0.142 4.142 26 C 0.120 3.880 27 N -0.482 5.482 28 H 0.089 0.911 29 H 0.127 0.873 30 H 0.087 0.913 31 H 0.149 0.851 32 H 0.420 0.580 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.115 0.885 37 H 0.020 0.980 38 H 0.024 0.976 39 H 0.271 0.729 40 H 0.162 0.838 41 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.271 -19.971 -8.164 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S 0.158 5.842 3 C -0.143 4.143 4 C -0.127 4.127 5 C -0.092 4.092 6 C 0.351 3.649 7 O -0.412 6.412 8 N -0.291 5.291 9 C 0.044 3.956 10 C -0.145 4.145 11 C -0.126 4.126 12 C -0.133 4.133 13 C -0.155 4.155 14 C -0.234 4.234 15 S 0.092 5.908 16 C -0.065 4.065 17 C -0.580 4.580 18 H 0.088 0.912 19 C -0.184 4.184 20 N -0.559 5.559 21 Si 0.799 3.201 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.165 4.165 26 C -0.039 4.039 27 N -0.196 5.196 28 H 0.108 0.892 29 H 0.146 0.854 30 H 0.106 0.894 31 H 0.167 0.833 32 H 0.260 0.740 33 H 0.166 0.834 34 H 0.178 0.822 35 H 0.169 0.831 36 H 0.133 0.867 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.180 0.820 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -12.012 -21.888 -7.887 26.184 hybrid contribution 1.048 2.979 0.407 3.184 sum -10.964 -18.909 -7.481 23.103 Atomic orbital electron populations 1.23565 0.91116 1.07756 1.06797 1.85706 1.10536 0.96957 1.91041 1.23214 0.91378 0.99878 0.99863 1.21772 0.96683 0.95464 0.98809 1.20001 0.92251 0.94652 1.02306 1.18464 0.89056 0.81603 0.75821 1.90727 1.46890 1.54612 1.48988 1.43337 1.07551 1.07648 1.70608 1.17301 0.85195 0.92861 1.00232 1.21436 0.93246 1.00554 0.99248 1.21391 0.95850 0.95896 0.99437 1.21359 0.99933 0.94251 0.97709 1.21244 0.92104 1.00745 1.01419 1.21798 0.98450 0.98205 1.04946 1.84544 1.18560 1.17363 1.70334 1.21006 0.96595 0.90584 0.98309 1.20915 0.96322 1.01360 1.39418 0.91248 1.25892 0.96845 0.99633 0.96030 1.70043 1.14635 1.24705 1.46560 0.85329 0.78406 0.77384 0.78968 1.19119 1.20427 1.18791 1.22594 0.93110 1.01593 0.99209 1.23278 0.96698 0.91347 0.92591 1.67999 1.34857 1.03545 1.13174 0.89243 0.85427 0.89398 0.83302 0.74036 0.83412 0.82198 0.83150 0.86693 0.96130 0.95768 0.91991 0.82019 0.78054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 10.01 113.37 1.14 -0.18 16 2 S -0.08 -1.36 22.55 -56.49 -1.27 -2.63 16 3 C 0.10 2.15 7.00 84.83 0.59 2.74 16 4 C -0.10 -2.26 9.41 22.79 0.21 -2.04 16 5 C -0.08 -1.81 5.90 -19.91 -0.12 -1.93 16 6 C 0.56 15.64 7.60 86.87 0.66 16.30 16 7 O -0.53 -17.35 13.61 -3.83 -0.05 -17.41 16 8 N -0.65 -18.45 5.12 -305.35 -1.56 -20.01 16 9 C 0.14 4.79 6.44 38.25 0.25 5.03 16 10 C -0.12 -3.72 8.72 22.38 0.20 -3.52 16 11 C -0.10 -2.74 10.04 22.29 0.22 -2.52 16 12 C -0.11 -3.23 10.04 22.28 0.22 -3.01 16 13 C -0.13 -4.75 9.36 22.39 0.21 -4.54 16 14 C -0.12 -4.44 6.12 22.72 0.14 -4.30 16 15 S -0.15 -6.27 20.56 -56.49 -1.16 -7.43 16 16 C 0.08 4.18 4.09 71.23 0.29 4.48 16 17 C -0.54 -29.25 9.13 25.60 0.23 -29.01 16 18 H 0.07 3.64 7.71 -2.91 -0.02 3.62 16 19 C 0.02 0.95 5.46 84.65 0.46 1.42 16 20 N -0.92 -52.32 13.29 21.45 0.28 -52.04 16 21 Si 0.98 41.71 29.54 68.60 2.03 43.74 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 23 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 25 C -0.14 -2.48 9.61 22.64 0.22 -2.27 16 26 C 0.12 1.87 11.16 84.61 0.94 2.82 16 27 N -0.48 -9.17 9.40 -192.39 -1.81 -10.98 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.15 3.37 7.74 -2.91 -0.02 3.35 16 32 H 0.42 10.67 5.81 -92.71 -0.54 10.13 16 33 H 0.15 4.37 5.78 -2.91 -0.02 4.35 16 34 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.12 4.63 5.88 -2.91 -0.02 4.61 16 37 H 0.02 1.12 7.75 -2.39 -0.02 1.10 16 38 H 0.02 1.29 7.75 -2.39 -0.02 1.28 16 39 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 40 H 0.16 2.23 6.54 -2.91 -0.02 2.21 16 41 H 0.20 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -66.48 377.34 2.87 -63.60 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.55 Total: 23.69 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 5.87 Total: -20.54 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -3.09 Total: -83.02 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.05 Total: -17.41 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: -7.62 SS G_CDS: -2.44 Total: -10.06 kcal Total: -66.48 2.87 -63.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108199205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.175 kcal (2) G-P(sol) polarization free energy of solvation -66.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds