Wall clock time and date at job start Tue Mar 31 2020 05:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47168 * 2 1 4 4 C 1.42901 * 114.00011 * 180.02562 * 3 2 1 5 5 H 1.09002 * 112.95037 * 21.89793 * 4 3 2 6 6 C 1.53949 * 113.66296 * 250.49359 * 4 3 2 7 7 C 1.53945 * 87.29391 * 220.79450 * 6 4 3 8 8 H 1.09008 * 113.65965 * 270.17167 * 7 6 4 9 9 N 1.46900 * 113.66455 * 139.20918 * 7 6 4 10 10 C 1.46898 * 111.00377 * 99.45857 * 9 7 6 11 11 H 1.09007 * 109.46753 * 325.54365 * 10 9 7 12 12 C 1.52995 * 109.47392 * 205.54249 * 10 9 7 13 13 C 1.50701 * 109.46918 * 65.53029 * 12 10 9 14 14 H 1.07996 * 120.00145 * 4.69690 * 13 12 10 15 15 C 1.37882 * 120.00138 * 184.69501 * 13 12 10 16 16 N 1.31506 * 120.00177 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99832 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46935 * 89.99614 * 17 15 13 19 19 H 1.48491 * 109.47157 * 210.00094 * 17 15 13 20 20 H 1.48506 * 109.46914 * 330.00482 * 17 15 13 21 21 C 1.50702 * 109.47402 * 85.53810 * 10 9 7 22 22 C 1.38262 * 119.94903 * 220.00331 * 21 10 9 23 23 C 1.38136 * 120.05924 * 180.02562 * 22 21 10 24 24 C 1.38736 * 119.94221 * 359.97438 * 23 22 21 25 25 O 1.35902 * 120.05492 * 180.02562 * 24 23 22 26 26 C 1.42904 * 116.99865 * 180.02562 * 25 24 23 27 27 C 1.38735 * 119.88742 * 0.28626 * 24 23 22 28 28 C 1.38143 * 119.94405 * 359.41988 * 27 24 23 29 29 C 1.52905 * 86.88703 * 24.68721 * 7 6 4 30 30 C 1.52912 * 121.14414 * 209.42587 * 29 7 6 31 31 C 1.53942 * 86.78466 * 209.37759 * 30 29 7 32 32 C 1.52908 * 121.13746 * 100.86073 * 29 7 6 33 33 H 1.09001 * 109.46821 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46806 * 300.00102 * 1 2 3 35 35 H 1.08991 * 109.47188 * 59.99915 * 1 2 3 36 36 H 1.09003 * 109.46806 * 239.99897 * 2 1 3 37 37 H 1.09005 * 109.47273 * 119.99962 * 2 1 3 38 38 H 1.08997 * 113.57962 * 106.18822 * 6 4 3 39 39 H 1.09003 * 113.64854 * 335.40815 * 6 4 3 40 40 H 1.00899 * 110.99384 * 335.50318 * 9 7 6 41 41 H 1.09001 * 109.47617 * 185.52906 * 12 10 9 42 42 H 1.08994 * 109.47363 * 305.53365 * 12 10 9 43 43 H 0.97000 * 119.99979 * 180.02562 * 16 15 13 44 44 H 1.08006 * 119.96820 * 0.02562 * 22 21 10 45 45 H 1.07999 * 120.03191 * 180.02562 * 23 22 21 46 46 H 1.08998 * 109.47316 * 59.99513 * 26 25 24 47 47 H 1.09004 * 109.46534 * 299.99533 * 26 25 24 48 48 H 1.09001 * 109.46852 * 180.02562 * 26 25 24 49 49 H 1.08005 * 120.02376 * 179.71492 * 27 24 23 50 50 H 1.07993 * 119.97039 * 180.32178 * 28 27 24 51 51 H 1.09002 * 113.66208 * 323.85203 * 30 29 7 52 52 H 1.09001 * 113.65893 * 94.89989 * 30 29 7 53 53 H 1.09009 * 113.58035 * 270.13197 * 31 30 29 54 54 H 1.09000 * 113.58189 * 139.33935 * 31 30 29 55 55 H 1.08993 * 113.66392 * 265.09506 * 32 29 7 56 56 H 1.09005 * 113.66163 * 36.06663 * 32 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9280 0.5653 -0.3753 6 6 4.0102 1.9780 1.3284 7 6 4.9831 2.8264 0.4894 8 1 5.9171 2.3161 0.2538 9 7 5.1899 4.1815 1.0176 10 6 6.4407 4.2628 1.7837 11 1 6.6120 3.3186 2.3008 12 6 6.3386 5.3943 2.8084 13 6 5.2815 5.0551 3.8275 14 1 4.7904 4.0937 3.7967 15 6 4.9413 5.9721 4.7993 16 7 4.0185 5.6764 5.6883 17 14 5.7912 7.6347 4.8531 18 1 5.0333 8.6052 4.0230 19 1 5.8441 8.1185 6.2560 20 1 7.1720 7.5021 4.3227 21 6 7.5876 4.5368 0.8453 22 6 8.8004 3.8999 1.0331 23 6 9.8534 4.1499 0.1746 24 6 9.6931 5.0404 -0.8770 25 8 10.7273 5.2876 -1.7233 26 6 10.4905 6.2163 -2.7833 27 6 8.4768 5.6823 -1.0601 28 6 7.4250 5.4243 -0.2024 29 6 3.9458 2.7564 -0.6318 30 6 4.3649 2.8101 -2.1014 31 6 2.9964 3.4585 -2.3781 32 6 3.0041 3.9281 -0.9120 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 -0.3633 0.5138 -0.8899 36 1 1.8933 -0.5139 -0.8900 37 1 1.8934 -0.5138 0.8900 38 1 4.5031 1.2062 1.9195 39 1 3.3053 2.5712 1.9110 40 1 4.4034 4.4753 1.5772 41 1 7.2989 5.5191 3.3088 42 1 6.0701 6.3208 2.3011 43 1 3.7789 6.3217 6.3718 44 1 8.9245 3.2064 1.8517 45 1 10.8003 3.6518 0.3214 46 1 10.2175 7.1846 -2.3638 47 1 9.6786 5.8507 -3.4120 48 1 11.3947 6.3216 -3.3828 49 1 8.3510 6.3795 -1.8753 50 1 6.4765 5.9198 -0.3477 51 1 5.2093 3.4725 -2.2915 52 1 4.4841 1.8277 -2.5584 53 1 2.2095 2.7378 -2.6010 54 1 3.0387 4.2758 -3.0980 55 1 2.0361 3.8389 -0.4190 56 1 3.4657 4.9048 -0.7664 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108394996.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:47 Heat of formation + Delta-G solvation = -34.418377 kcal Electronic energy + Delta-G solvation = -33614.269335 eV Core-core repulsion = 29489.244265 eV Total energy + Delta-G solvation = -4125.025070 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 359.225 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.72387 -40.95293 -38.98465 -38.07770 -36.86556 -35.29679 -34.18690 -32.00937 -31.89828 -30.71681 -30.54765 -28.14911 -26.58242 -26.14133 -25.43464 -24.23726 -23.63806 -23.41451 -22.92884 -21.75003 -21.03255 -19.13752 -19.00999 -18.87654 -17.80846 -17.13762 -16.92400 -16.60490 -16.54750 -16.39334 -16.18038 -16.00899 -15.70998 -15.31970 -14.92761 -14.70327 -14.47713 -14.38415 -14.07206 -13.99165 -13.81092 -13.56821 -13.45116 -13.35431 -13.14580 -13.06968 -12.98273 -12.87416 -12.65631 -12.46248 -12.41438 -12.20774 -12.05533 -11.93335 -11.90819 -11.78927 -11.61919 -11.46680 -11.31861 -11.16862 -10.97188 -10.81633 -10.74655 -10.20070 -9.82150 -9.09559 -8.89939 -8.27152 -6.29501 0.51199 0.60273 1.35263 1.37318 1.48464 2.36452 2.46345 2.70694 2.92063 3.08061 3.44126 3.54814 3.65083 3.75892 3.91930 4.00049 4.02733 4.06042 4.09469 4.18704 4.19974 4.29094 4.39375 4.42612 4.44185 4.50134 4.51668 4.58088 4.61663 4.65704 4.70456 4.72510 4.76852 4.78003 4.87261 4.90240 4.92100 5.03757 5.07055 5.08643 5.10520 5.16126 5.22446 5.25125 5.28424 5.33969 5.41395 5.43822 5.53580 5.61079 5.67706 5.71697 5.87607 5.92850 6.26118 6.40413 6.45441 6.54786 6.62835 6.77213 7.34964 8.88691 Molecular weight = 359.22amu Principal moments of inertia in cm(-1) A = 0.006073 B = 0.004158 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4609.588417 B = 6732.259421 C =10206.777189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.387 6.387 4 C 0.098 3.902 5 H 0.104 0.896 6 C -0.187 4.187 7 C 0.090 3.910 8 H 0.097 0.903 9 N -0.656 5.656 10 C 0.153 3.847 11 H 0.030 0.970 12 C -0.001 4.001 13 C -0.516 4.516 14 H 0.038 0.962 15 C 0.015 3.985 16 N -0.946 5.946 17 Si 0.940 3.060 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.254 1.254 21 C -0.108 4.108 22 C -0.089 4.089 23 C -0.161 4.161 24 C 0.109 3.891 25 O -0.335 6.335 26 C 0.020 3.980 27 C -0.210 4.210 28 C -0.054 4.054 29 C -0.087 4.087 30 C -0.111 4.111 31 C -0.125 4.125 32 C -0.105 4.105 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.347 0.653 41 H 0.015 0.985 42 H 0.022 0.978 43 H 0.264 0.736 44 H 0.129 0.871 45 H 0.138 0.862 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.119 0.881 49 H 0.145 0.855 50 H 0.127 0.873 51 H 0.083 0.917 52 H 0.073 0.927 53 H 0.077 0.923 54 H 0.072 0.928 55 H 0.049 0.951 56 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.622 -6.915 -20.629 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.306 6.306 4 C 0.040 3.960 5 H 0.122 0.878 6 C -0.227 4.227 7 C -0.021 4.021 8 H 0.115 0.885 9 N -0.286 5.286 10 C 0.043 3.957 11 H 0.049 0.951 12 C -0.039 4.039 13 C -0.554 4.554 14 H 0.056 0.944 15 C -0.182 4.182 16 N -0.587 5.587 17 Si 0.765 3.235 18 H -0.193 1.193 19 H -0.214 1.214 20 H -0.178 1.178 21 C -0.109 4.109 22 C -0.108 4.108 23 C -0.179 4.179 24 C 0.064 3.936 25 O -0.249 6.249 26 C -0.075 4.075 27 C -0.228 4.228 28 C -0.072 4.072 29 C -0.088 4.088 30 C -0.148 4.148 31 C -0.162 4.162 32 C -0.143 4.143 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.167 0.833 41 H 0.033 0.967 42 H 0.040 0.960 43 H 0.073 0.927 44 H 0.147 0.853 45 H 0.156 0.844 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.138 0.862 49 H 0.162 0.838 50 H 0.145 0.855 51 H 0.102 0.898 52 H 0.092 0.908 53 H 0.096 0.904 54 H 0.090 0.910 55 H 0.068 0.932 56 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.878 -6.508 -21.057 22.573 hybrid contribution -0.373 0.167 1.858 1.903 sum 4.505 -6.341 -19.199 20.715 Atomic orbital electron populations 1.21746 0.93112 1.03238 1.02417 1.22684 0.96280 0.83395 1.00478 1.87955 1.20729 1.27394 1.94531 1.23210 0.80938 0.97120 0.94727 0.87839 1.24152 0.99839 1.00894 0.97840 1.22509 0.96158 0.88525 0.94890 0.88518 1.60368 1.04763 1.22732 1.40734 1.20043 0.88262 0.96987 0.90388 0.95148 1.19611 0.95607 0.95238 0.93425 1.21263 1.20449 1.01451 1.12267 0.94362 1.25794 0.95254 1.02187 0.94963 1.70048 1.33153 1.37331 1.18120 0.85811 0.80346 0.80209 0.77171 1.19332 1.21415 1.17796 1.19931 0.94790 0.98877 0.97347 1.20970 0.92057 0.99180 0.98548 1.20464 1.00397 1.01443 0.95612 1.19112 0.87273 0.95834 0.91361 1.86015 1.36125 1.62165 1.40642 1.23296 1.04604 0.91526 0.88049 1.21403 0.93001 1.04740 1.03665 1.20836 0.98230 0.95444 0.92720 1.22875 0.96002 0.95312 0.94655 1.22632 0.97495 1.01189 0.93480 1.22719 0.97335 1.00283 0.95868 1.22305 0.97932 0.97246 0.96775 0.89071 0.93247 0.91949 0.91901 0.93715 0.92007 0.92048 0.83272 0.96721 0.95953 0.92699 0.85261 0.84366 0.92253 0.91859 0.86237 0.83784 0.85518 0.89814 0.90820 0.90416 0.90958 0.93241 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 10.28 71.98 0.74 -1.97 16 2 C 0.05 1.01 6.51 71.98 0.47 1.48 16 3 O -0.39 -10.80 9.55 -148.98 -1.42 -12.23 16 4 C 0.10 2.61 4.17 30.95 0.13 2.74 16 5 H 0.10 2.28 7.90 -2.39 -0.02 2.26 16 6 C -0.19 -6.11 7.57 31.23 0.24 -5.87 16 7 C 0.09 2.78 3.70 45.20 0.17 2.95 16 8 H 0.10 2.89 7.89 -2.38 -0.02 2.87 16 9 N -0.66 -23.46 4.84 -471.83 -2.28 -25.74 16 10 C 0.15 5.88 2.09 44.17 0.09 5.97 16 11 H 0.03 1.24 7.71 -2.38 -0.02 1.22 16 12 C 0.00 -0.05 3.60 29.85 0.11 0.06 16 13 C -0.52 -28.55 8.61 25.60 0.22 -28.33 16 14 H 0.04 2.32 7.90 -2.91 -0.02 2.30 16 15 C 0.02 0.89 5.47 84.66 0.46 1.35 16 16 N -0.95 -58.56 13.96 21.45 0.30 -58.26 16 17 Si 0.94 44.67 27.38 68.60 1.88 46.55 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.25 -11.51 6.68 99.48 0.66 -10.84 16 21 C -0.11 -3.61 4.76 -19.85 -0.09 -3.70 16 22 C -0.09 -2.70 9.66 22.25 0.21 -2.48 16 23 C -0.16 -4.43 9.99 22.36 0.22 -4.21 16 24 C 0.11 2.93 6.69 22.51 0.15 3.08 16 25 O -0.34 -7.96 10.50 -92.44 -0.97 -8.93 16 26 C 0.02 0.29 9.81 113.37 1.11 1.41 16 27 C -0.21 -5.49 9.04 22.37 0.20 -5.29 16 28 C -0.05 -1.65 9.32 22.25 0.21 -1.44 16 29 C -0.09 -2.35 1.08 -52.25 -0.06 -2.40 16 30 C -0.11 -2.46 7.85 30.88 0.24 -2.22 16 31 C -0.12 -2.79 8.08 31.23 0.25 -2.54 16 32 C -0.10 -2.97 7.15 30.89 0.22 -2.75 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.06 2.43 7.85 -2.39 -0.02 2.41 16 40 H 0.35 14.61 6.89 -89.70 -0.62 13.99 16 41 H 0.01 0.69 7.52 -2.39 -0.02 0.67 16 42 H 0.02 1.03 7.31 -2.39 -0.02 1.01 16 43 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.13 3.66 8.03 -2.91 -0.02 3.64 16 45 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 46 H 0.06 0.83 7.65 -2.39 -0.02 0.81 16 47 H 0.06 0.83 7.67 -2.38 -0.02 0.81 16 48 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.14 2.98 6.30 -2.91 -0.02 2.97 16 50 H 0.13 3.96 7.71 -2.91 -0.02 3.94 16 51 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 52 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 53 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 54 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 55 H 0.05 1.57 7.66 -2.39 -0.02 1.56 16 56 H 0.08 2.49 7.76 -2.38 -0.02 2.47 16 Total: -1.00 -65.43 442.24 2.99 -62.44 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: 0.18 Total: 40.33 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 5.30 Total: -44.17 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -1.98 Total: -83.99 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -2.39 Total: -21.16 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -65.43 2.99 -62.44 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108394996.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.023 kcal (2) G-P(sol) polarization free energy of solvation -65.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds