Wall clock time and date at job start Tue Mar 31 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99935 * 2 1 4 4 H 1.48493 * 109.47521 * 274.90233 * 3 2 1 5 5 H 1.48501 * 109.47119 * 34.90523 * 3 2 1 6 6 H 1.48504 * 109.46759 * 154.90170 * 3 2 1 7 7 C 1.38807 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00537 * 339.74191 * 7 2 1 9 9 N 1.36946 * 119.99655 * 159.74628 * 7 2 1 10 10 C 1.46923 * 120.62765 * 152.79077 * 9 7 2 11 11 C 1.53194 * 108.77578 * 126.36715 * 10 9 7 12 12 C 1.53042 * 109.33677 * 54.61637 * 11 10 9 13 13 H 1.09001 * 109.46175 * 58.67552 * 12 11 10 14 14 C 1.50710 * 109.45866 * 178.62893 * 12 11 10 15 15 C 1.38247 * 119.97133 * 59.72474 * 14 12 11 16 16 C 1.38194 * 120.02205 * 179.76901 * 15 14 12 17 17 C 1.38460 * 119.97334 * 0.50093 * 16 15 14 18 18 F 1.35104 * 120.02156 * 179.76863 * 17 16 15 19 19 C 1.38459 * 119.95205 * 359.75570 * 17 16 15 20 20 C 1.38204 * 119.97129 * 359.97438 * 19 17 16 21 21 C 1.53032 * 109.54276 * 298.68241 * 12 11 10 22 22 H 1.09002 * 109.47356 * 301.36992 * 21 12 11 23 23 N 1.46494 * 109.52963 * 181.30337 * 21 12 11 24 24 C 1.34776 * 120.00351 * 155.11464 * 23 21 12 25 25 O 1.21283 * 120.00131 * 359.97438 * 24 23 21 26 26 C 1.50703 * 120.00050 * 180.02562 * 24 23 21 27 27 F 1.39896 * 109.46945 * 179.97438 * 26 24 23 28 28 F 1.39900 * 109.47053 * 299.99705 * 26 24 23 29 29 F 1.39898 * 109.46983 * 59.99726 * 26 24 23 30 30 C 1.46923 * 120.63181 * 332.76326 * 9 7 2 31 31 H 0.97007 * 120.00338 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.58874 * 6.57966 * 10 9 7 33 33 H 1.09007 * 109.58618 * 246.15027 * 10 9 7 34 34 H 1.09004 * 109.49832 * 174.57702 * 11 10 9 35 35 H 1.08994 * 109.50059 * 294.65181 * 11 10 9 36 36 H 1.08002 * 119.98598 * 0.02562 * 15 14 12 37 37 H 1.08004 * 120.01367 * 180.25757 * 16 15 14 38 38 H 1.07999 * 120.01294 * 180.02562 * 19 17 16 39 39 H 1.07999 * 119.98417 * 179.97438 * 20 19 17 40 40 H 0.97001 * 119.99873 * 335.10683 * 23 21 12 41 41 H 1.09008 * 109.58636 * 353.42220 * 30 9 7 42 42 H 1.08997 * 109.58505 * 113.69927 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3941 2.1063 -1.3948 5 1 1.5033 2.6205 0.8012 6 1 3.5957 1.4124 0.5939 7 6 2.0102 -1.2021 -0.0005 8 1 1.5203 -2.1087 0.3229 9 7 3.3161 -1.2386 -0.4111 10 6 4.2333 -2.2658 0.1009 11 6 4.8793 -2.9863 -1.0867 12 6 5.5393 -1.9563 -2.0063 13 1 6.2864 -1.3947 -1.4454 14 6 6.2046 -2.6649 -3.1580 15 6 5.4534 -3.4504 -4.0124 16 6 6.0616 -4.0968 -5.0717 17 6 7.4255 -3.9659 -5.2709 18 9 8.0219 -4.6011 -6.3034 19 6 8.1777 -3.1832 -4.4114 20 6 7.5664 -2.5332 -3.3561 21 6 4.4770 -0.9947 -2.5436 22 1 3.7166 -1.5585 -3.0841 23 7 5.1041 -0.0280 -3.4482 24 6 4.3705 0.5731 -4.4058 25 8 3.1912 0.3134 -4.5190 26 6 5.0159 1.5671 -5.3367 27 9 4.0606 2.0512 -6.2368 28 9 5.5383 2.6310 -4.5935 29 9 6.0479 0.9414 -6.0443 30 6 3.8264 -0.2517 -1.3725 31 1 -0.4851 0.8401 0.0004 32 1 3.6780 -2.9830 0.7053 33 1 5.0071 -1.7952 0.7075 34 1 5.6329 -3.6845 -0.7225 35 1 4.1153 -3.5318 -1.6406 36 1 4.3902 -3.5555 -3.8544 37 1 5.4739 -4.7070 -5.7415 38 1 9.2416 -3.0801 -4.5662 39 1 8.1530 -1.9230 -2.6853 40 1 6.0473 0.1795 -3.3579 41 1 3.0026 0.3601 -1.7402 42 1 4.5650 0.3849 -0.8853 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110710623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:37 Heat of formation + Delta-G solvation = -177.129002 kcal Electronic energy + Delta-G solvation = -33939.054497 eV Core-core repulsion = 28805.431885 eV Total energy + Delta-G solvation = -5133.622612 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.120 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.42053 -49.02228 -47.95519 -47.89651 -40.51876 -39.27269 -37.63130 -34.83005 -33.48923 -31.59160 -31.31582 -30.13031 -29.28568 -27.33867 -25.38366 -23.49260 -23.22982 -22.75293 -21.36232 -21.07331 -20.00490 -18.98856 -18.86953 -18.63453 -17.84010 -17.10807 -16.40222 -16.24241 -16.08133 -15.72613 -15.33446 -15.18464 -14.89903 -14.65201 -14.55781 -14.36351 -14.32285 -14.19433 -14.03667 -14.01670 -13.76323 -13.58999 -13.45959 -13.37999 -13.07933 -12.80447 -12.61898 -12.45225 -12.18251 -11.64786 -11.46061 -11.14161 -10.98105 -10.82191 -10.53139 -10.39985 -10.19989 -9.97588 -9.59780 -9.32806 -9.26034 -8.70849 -8.63021 -7.12900 -6.02585 -3.41078 0.97796 1.06964 1.81017 1.85651 2.96540 3.28833 3.40456 3.40886 3.44460 3.60178 4.00079 4.03369 4.11034 4.43748 4.45907 4.57394 4.71669 4.81166 4.83686 5.06982 5.11948 5.27055 5.30356 5.39110 5.53862 5.68202 5.73382 5.82265 5.90497 5.94598 6.02718 6.04826 6.10886 6.14621 6.30051 6.40293 6.47372 6.49130 6.71357 6.73457 6.98957 7.59386 7.84038 8.24470 8.81755 9.62074 9.95018 11.12769 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.008843 B = 0.004810 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.573238 B = 5819.495681 C = 8062.985584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.031 3.969 3 Si 0.876 3.124 4 H -0.288 1.288 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.269 4.269 8 H 0.089 0.911 9 N -0.597 5.597 10 C 0.145 3.855 11 C -0.123 4.123 12 C -0.049 4.049 13 H 0.085 0.915 14 C -0.082 4.082 15 C -0.079 4.079 16 C -0.149 4.149 17 C 0.088 3.912 18 F -0.144 7.144 19 C -0.152 4.152 20 C -0.091 4.091 21 C 0.133 3.867 22 H 0.102 0.898 23 N -0.692 5.692 24 C 0.478 3.522 25 O -0.464 6.464 26 C 0.448 3.552 27 F -0.155 7.155 28 F -0.169 7.169 29 F -0.170 7.170 30 C 0.117 3.883 31 H 0.264 0.736 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.404 0.596 41 H 0.082 0.918 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.885 -3.594 -8.761 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.169 4.169 3 Si 0.706 3.294 4 H -0.215 1.215 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.396 4.396 8 H 0.107 0.893 9 N -0.321 5.321 10 C 0.019 3.981 11 C -0.162 4.162 12 C -0.068 4.068 13 H 0.103 0.897 14 C -0.082 4.082 15 C -0.097 4.097 16 C -0.168 4.168 17 C 0.069 3.931 18 F -0.123 7.123 19 C -0.171 4.171 20 C -0.109 4.109 21 C 0.028 3.972 22 H 0.120 0.880 23 N -0.344 5.344 24 C 0.255 3.745 25 O -0.335 6.335 26 C 0.389 3.611 27 F -0.136 7.136 28 F -0.151 7.151 29 F -0.151 7.151 30 C -0.010 4.010 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.239 0.761 41 H 0.100 0.900 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 16.837 -3.725 -8.846 19.381 hybrid contribution 1.167 1.279 -0.531 1.811 sum 18.005 -2.445 -9.377 20.447 Atomic orbital electron populations 1.69817 1.05734 1.26743 1.51890 1.25259 0.95187 0.97544 0.98911 0.87048 0.80217 0.85065 0.77095 1.21530 1.22847 1.19368 1.18882 0.84659 0.94879 1.41221 0.89308 1.44266 1.08803 1.32981 1.46025 1.21025 0.92601 0.91405 0.93068 1.22129 0.99633 0.96842 0.97645 1.20444 0.96764 0.95964 0.93657 0.89699 1.20034 0.93574 0.97706 0.96893 1.20979 1.00632 0.95018 0.93114 1.21157 0.92983 1.02564 1.00066 1.17731 0.91490 0.96549 0.87291 1.91488 1.84060 1.80221 1.56508 1.21086 1.00526 0.99260 0.96185 1.20933 0.93997 0.99041 0.96970 1.22154 0.94710 0.89202 0.91106 0.87988 1.46008 1.13405 1.43116 1.31884 1.20196 0.88175 0.83306 0.82872 1.90948 1.13551 1.59955 1.68998 1.20468 0.77200 0.81961 0.81430 1.93259 1.63572 1.88422 1.68318 1.93256 1.87036 1.58522 1.76242 1.93249 1.59834 1.82000 1.80051 1.21774 0.97933 0.92535 0.88725 0.92569 0.91092 0.95486 0.91416 0.91121 0.84735 0.84852 0.84962 0.85035 0.76127 0.90021 0.95006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.97 55.49 0.78 -26.48 16 2 C 0.03 0.88 5.24 -17.43 -0.09 0.79 16 3 Si 0.88 21.98 24.34 -169.99 -4.14 17.84 16 4 H -0.29 -7.25 6.70 56.52 0.38 -6.87 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.27 -6.41 6.45 56.52 0.36 -6.04 16 7 C -0.27 -7.13 10.04 -15.06 -0.15 -7.28 16 8 H 0.09 2.51 8.05 -52.49 -0.42 2.08 16 9 N -0.60 -12.89 2.77 -172.32 -0.48 -13.37 16 10 C 0.14 2.41 6.52 -3.71 -0.02 2.39 16 11 C -0.12 -1.60 5.15 -26.61 -0.14 -1.74 16 12 C -0.05 -0.59 1.92 -91.73 -0.18 -0.77 16 13 H 0.08 0.90 7.87 -51.93 -0.41 0.50 16 14 C -0.08 -0.88 4.34 -104.61 -0.45 -1.33 16 15 C -0.08 -0.90 8.74 -39.59 -0.35 -1.25 16 16 C -0.15 -1.62 10.03 -39.52 -0.40 -2.02 16 17 C 0.09 0.97 7.30 -39.42 -0.29 0.69 16 18 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 19 C -0.15 -1.44 10.03 -39.51 -0.40 -1.84 16 20 C -0.09 -0.83 9.67 -39.59 -0.38 -1.21 16 21 C 0.13 2.06 1.86 -67.82 -0.13 1.94 16 22 H 0.10 1.81 6.90 -51.93 -0.36 1.45 16 23 N -0.69 -9.35 4.62 -53.69 -0.25 -9.60 16 24 C 0.48 7.48 7.32 -10.98 -0.08 7.40 16 25 O -0.46 -9.23 16.28 5.55 0.09 -9.14 16 26 C 0.45 6.00 3.43 36.01 0.12 6.12 16 27 F -0.15 -2.27 16.92 2.25 0.04 -2.24 16 28 F -0.17 -2.15 17.30 2.25 0.04 -2.11 16 29 F -0.17 -2.01 17.30 2.25 0.04 -1.97 16 30 C 0.12 2.36 3.77 -3.71 -0.01 2.34 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.07 1.20 7.93 -51.93 -0.41 0.78 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.98 7.42 -51.93 -0.39 0.60 16 36 H 0.13 1.57 7.13 -52.49 -0.37 1.20 16 37 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 0.90 7.94 -52.49 -0.42 0.48 16 40 H 0.40 4.09 8.59 -40.82 -0.35 3.74 16 41 H 0.08 1.96 4.50 -51.92 -0.23 1.72 16 42 H 0.03 0.62 6.97 -51.93 -0.36 0.26 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -31.43 360.42 -5.96 -37.39 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.61 Total: 1.66 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -2.94 Total: 4.23 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.05 Total: -49.44 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 0.15 Total: -7.97 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.14 Total: 17.84 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.43 -5.96 -37.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110710623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.741 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds