Wall clock time and date at job start Tue Mar 31 2020 06:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46614 * 2 1 4 4 C 1.50697 * 109.47230 * 119.99743 * 2 1 3 5 5 H 1.07997 * 120.00124 * 120.00217 * 4 2 1 6 6 C 1.37888 * 119.99885 * 300.00182 * 4 2 1 7 7 N 1.31507 * 120.00004 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99477 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47211 * 60.00176 * 8 6 4 10 10 H 1.48510 * 109.46756 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47197 * 299.99608 * 8 6 4 12 12 S 1.81397 * 109.46959 * 239.99798 * 2 1 3 13 13 C 1.76202 * 102.99899 * 68.54276 * 12 2 1 14 14 C 1.38774 * 120.10513 * 5.31015 * 13 12 2 15 15 C 1.38203 * 119.98896 * 180.02562 * 14 13 12 16 16 C 1.38287 * 120.19851 * 0.02562 * 15 14 13 17 17 C 1.38270 * 120.20302 * 359.72065 * 16 15 14 18 18 C 1.38632 * 120.00958 * 0.55373 * 17 16 15 19 19 N 1.40183 * 120.09824 * 179.72077 * 18 17 16 20 20 C 1.34781 * 119.99990 * 29.57381 * 19 18 17 21 21 O 1.21595 * 119.99824 * 356.23796 * 20 19 18 22 22 N 1.34782 * 119.99921 * 176.23310 * 20 19 18 23 23 C 1.48328 * 128.19918 * 0.02974 * 22 20 19 24 24 C 1.56832 * 104.34592 * 137.67733 * 23 22 20 25 25 H 1.08994 * 112.79620 * 264.53820 * 24 23 22 26 26 C 1.54289 * 108.95069 * 138.50888 * 24 23 22 27 27 C 1.55173 * 104.07435 * 224.28139 * 26 24 23 28 28 C 1.55034 * 102.04123 * 39.96904 * 27 26 24 29 29 C 1.54280 * 104.10695 * 320.02148 * 28 27 26 30 30 H 1.09002 * 111.97591 * 262.28320 * 29 28 27 31 31 C 1.48339 * 128.19650 * 180.02562 * 22 20 19 32 32 H 1.09006 * 109.47158 * 306.65241 * 1 2 3 33 33 H 1.08991 * 109.46883 * 66.65117 * 1 2 3 34 34 H 1.08998 * 109.46889 * 186.65708 * 1 2 3 35 35 H 0.97000 * 119.99842 * 179.97438 * 7 6 4 36 36 H 1.08003 * 120.00663 * 0.04403 * 14 13 12 37 37 H 1.08007 * 119.90082 * 180.02562 * 15 14 13 38 38 H 1.08000 * 119.89826 * 179.97438 * 16 15 14 39 39 H 1.08003 * 119.99062 * 180.27856 * 17 16 15 40 40 H 0.96997 * 120.00377 * 209.57378 * 19 18 17 41 41 H 1.09009 * 110.45887 * 256.87381 * 23 22 20 42 42 H 1.08997 * 110.46182 * 19.44776 * 23 22 20 43 43 H 1.09000 * 110.52353 * 342.81112 * 26 24 23 44 44 H 1.08994 * 110.52563 * 105.56230 * 26 24 23 45 45 H 1.08997 * 110.84180 * 281.82815 * 27 26 24 46 46 H 1.09003 * 111.02644 * 158.19051 * 27 26 24 47 47 H 1.09003 * 110.53011 * 201.32792 * 28 27 26 48 48 H 1.09003 * 110.52576 * 78.71668 * 28 27 26 49 49 H 1.08994 * 110.46001 * 103.12102 * 31 22 20 50 50 H 1.09000 * 110.56491 * 340.59643 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3226 -1.1194 4.0080 9 1 3.8076 -1.1187 4.0077 10 1 1.8280 -0.4190 5.2205 11 1 1.8282 -2.5196 4.0082 12 16 2.1347 -0.8552 -1.4811 13 6 1.6746 0.2371 -2.7850 14 6 1.1094 1.4704 -2.4930 15 6 0.7490 2.3250 -3.5176 16 6 0.9493 1.9550 -4.8349 17 6 1.5166 0.7303 -5.1349 18 6 1.8761 -0.1360 -4.1140 19 7 2.4460 -1.3806 -4.4161 20 6 3.1800 -1.5316 -5.5365 21 8 3.2912 -0.6079 -6.3195 22 7 3.7908 -2.7063 -5.7888 23 6 3.7779 -3.9417 -4.9680 24 6 3.5992 -5.0993 -6.0109 25 1 2.5595 -5.4041 -6.1294 26 6 4.5245 -6.2712 -5.6222 27 6 5.1668 -6.7065 -6.9659 28 6 5.4343 -5.3429 -7.6533 29 6 4.1851 -4.5016 -7.3187 30 1 3.4599 -4.5069 -8.1325 31 6 4.6349 -3.0697 -6.9531 32 1 -0.3634 0.6135 0.8245 33 1 -0.3633 0.4073 -0.9434 34 1 -0.3633 -1.0207 0.1191 35 1 0.7089 1.1615 3.4844 36 1 0.9515 1.7625 -1.4653 37 1 0.3096 3.2848 -3.2888 38 1 0.6655 2.6265 -5.6318 39 1 1.6756 0.4467 -6.1648 40 1 2.3122 -2.1332 -3.8190 41 1 4.7177 -4.0489 -4.4261 42 1 2.9367 -3.9300 -4.2750 43 1 5.2924 -5.9366 -4.9246 44 1 3.9458 -7.0885 -5.1919 45 1 4.4712 -7.3075 -7.5516 46 1 6.0986 -7.2465 -6.7972 47 1 5.5314 -5.4708 -8.7314 48 1 6.3301 -4.8770 -7.2425 49 1 5.6893 -3.0601 -6.6771 50 1 4.4534 -2.3891 -7.7850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123440499.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:15 Heat of formation + Delta-G solvation = -1.687131 kcal Electronic energy + Delta-G solvation = -29723.161196 eV Core-core repulsion = 25841.049325 eV Total energy + Delta-G solvation = -3882.111871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.81396 -39.53500 -37.98352 -34.96343 -34.66842 -34.08302 -31.10443 -30.82732 -30.01404 -29.88296 -28.47519 -25.92897 -25.38678 -24.32940 -22.65327 -22.18685 -21.32938 -21.15935 -19.77062 -19.45069 -18.43529 -17.45971 -16.68865 -16.38406 -16.10884 -15.94502 -15.30624 -15.14243 -14.92927 -14.54969 -14.31717 -14.03849 -13.71936 -13.61783 -13.37731 -13.25968 -12.73141 -12.62232 -12.54016 -12.30963 -11.96725 -11.74381 -11.59010 -11.43624 -11.39545 -11.14278 -11.08916 -11.06539 -11.03367 -10.95826 -10.87617 -10.62104 -10.49573 -10.30324 -10.06820 -9.72906 -9.46659 -9.08317 -8.95309 -8.91547 -8.54874 -7.89624 -6.55343 -6.24809 -4.33649 1.62810 1.79004 2.34463 2.56935 3.15683 3.21479 3.25801 3.28972 3.58952 3.83339 3.98706 4.16385 4.18172 4.27147 4.34411 4.79276 4.85207 4.92186 5.00612 5.03975 5.07863 5.12019 5.27488 5.35275 5.36792 5.39713 5.47651 5.50857 5.56332 5.63996 5.66297 5.74289 5.76614 5.84845 5.89158 5.96660 5.98543 6.09265 6.29261 6.52555 6.55898 6.64735 6.71469 6.74283 6.82389 6.93975 7.03986 7.30055 7.38832 7.57028 7.73043 7.88703 7.96504 8.52179 8.64614 9.30445 10.81696 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009879 B = 0.002786 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.668773 B =10049.310196 C =12542.696614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.101 3.899 3 H 0.051 0.949 4 C -0.513 4.513 5 H 0.066 0.934 6 C 0.072 3.928 7 N -0.886 5.886 8 Si 0.906 3.094 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 S -0.177 6.177 13 C -0.092 4.092 14 C -0.114 4.114 15 C -0.121 4.121 16 C -0.123 4.123 17 C -0.116 4.116 18 C 0.166 3.834 19 N -0.672 5.672 20 C 0.730 3.270 21 O -0.576 6.576 22 N -0.642 5.642 23 C 0.101 3.899 24 C -0.101 4.101 25 H 0.091 0.909 26 C -0.119 4.119 27 C -0.124 4.124 28 C -0.119 4.119 29 C -0.107 4.107 30 H 0.087 0.913 31 C 0.130 3.870 32 H 0.090 0.910 33 H 0.021 0.979 34 H 0.041 0.959 35 H 0.267 0.733 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.145 0.855 40 H 0.408 0.592 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.470 -10.848 -18.370 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.026 4.026 3 H 0.069 0.931 4 C -0.552 4.552 5 H 0.084 0.916 6 C -0.133 4.133 7 N -0.523 5.523 8 Si 0.733 3.267 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 S 0.070 5.930 13 C -0.208 4.208 14 C -0.139 4.139 15 C -0.142 4.142 16 C -0.145 4.145 17 C -0.137 4.137 18 C 0.064 3.936 19 N -0.319 5.319 20 C 0.434 3.566 21 O -0.454 6.454 22 N -0.379 5.379 23 C -0.022 4.022 24 C -0.120 4.120 25 H 0.109 0.891 26 C -0.157 4.157 27 C -0.162 4.162 28 C -0.157 4.157 29 C -0.126 4.126 30 H 0.105 0.895 31 C 0.007 3.993 32 H 0.109 0.891 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.156 0.844 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.162 0.838 40 H 0.246 0.754 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.065 -11.095 -18.709 22.333 hybrid contribution -0.451 0.443 1.334 1.476 sum 4.614 -10.652 -17.375 20.896 Atomic orbital electron populations 1.22126 0.96242 1.01561 1.00122 1.21072 0.95585 0.97321 0.88629 0.93078 1.20571 1.32779 1.13272 0.88621 0.91595 1.24883 0.94619 0.94924 0.98832 1.69863 1.35729 1.22401 1.24277 0.86415 0.79342 0.79657 0.81269 1.19936 1.21004 1.19945 1.85004 1.74150 1.32480 1.01327 1.21737 1.04912 0.98887 0.95236 1.21281 0.99497 0.92591 1.00530 1.21023 1.01067 0.99435 0.92629 1.20944 1.00739 0.96536 0.96266 1.21283 0.98703 0.94311 0.99449 1.16987 0.99102 0.86021 0.91442 1.42557 1.52555 1.12140 1.24608 1.15243 0.78097 0.81472 0.81836 1.90873 1.67023 1.38966 1.48521 1.48124 1.53060 1.11137 1.25596 1.23107 1.02389 0.83101 0.93593 1.23249 1.00081 0.94452 0.94255 0.89103 1.22520 0.98385 0.97195 0.97556 1.22604 1.00570 0.96825 0.96176 1.22528 0.97076 0.95473 1.00609 1.22888 0.97673 0.94370 0.97670 0.89460 1.22453 0.93689 0.94815 0.88358 0.89113 0.95992 0.93986 0.92344 0.84439 0.86239 0.86262 0.83767 0.75427 0.90213 0.90671 0.90886 0.91276 0.91411 0.91371 0.91474 0.91014 0.90948 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.33 37.16 0.31 -2.95 16 2 C 0.10 2.45 1.98 -27.88 -0.06 2.40 16 3 H 0.05 1.33 6.97 -51.92 -0.36 0.97 16 4 C -0.51 -13.54 8.58 -34.44 -0.30 -13.84 16 5 H 0.07 1.74 7.71 -52.49 -0.40 1.34 16 6 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 7 N -0.89 -23.86 11.40 55.43 0.63 -23.23 16 8 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 S -0.18 -3.73 20.03 -107.50 -2.15 -5.88 16 13 C -0.09 -1.81 5.98 -38.91 -0.23 -2.04 16 14 C -0.11 -2.17 7.96 -39.40 -0.31 -2.48 16 15 C -0.12 -1.97 10.04 -39.58 -0.40 -2.37 16 16 C -0.12 -1.92 10.04 -39.55 -0.40 -2.32 16 17 C -0.12 -2.00 8.74 -39.42 -0.34 -2.35 16 18 C 0.17 3.03 6.40 -83.42 -0.53 2.49 16 19 N -0.67 -10.94 5.08 -14.06 -0.07 -11.01 16 20 C 0.73 11.68 8.45 -86.91 -0.73 10.95 16 21 O -0.58 -10.76 13.76 5.28 0.07 -10.69 16 22 N -0.64 -7.84 3.31 -173.08 -0.57 -8.42 16 23 C 0.10 0.96 6.55 -0.96 -0.01 0.95 16 24 C -0.10 -0.74 4.10 -86.67 -0.35 -1.10 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 26 C -0.12 -0.72 6.37 -24.91 -0.16 -0.88 16 27 C -0.12 -0.67 6.94 -24.51 -0.17 -0.84 16 28 C -0.12 -0.69 6.33 -24.99 -0.16 -0.85 16 29 C -0.11 -0.78 3.91 -87.97 -0.34 -1.12 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 C 0.13 1.26 6.58 -2.25 -0.01 1.25 16 32 H 0.09 2.26 6.28 -51.93 -0.33 1.94 16 33 H 0.02 0.45 5.89 -51.93 -0.31 0.15 16 34 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.14 2.76 4.92 -52.48 -0.26 2.50 16 37 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 38 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 39 H 0.14 2.53 5.83 -52.48 -0.31 2.22 16 40 H 0.41 6.15 6.20 -40.82 -0.25 5.90 16 41 H 0.08 0.71 7.29 -51.92 -0.38 0.33 16 42 H 0.07 0.71 6.80 -51.93 -0.35 0.36 16 43 H 0.07 0.45 7.24 -51.93 -0.38 0.08 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.07 0.41 7.20 -51.93 -0.37 0.04 16 49 H 0.07 0.64 7.21 -51.93 -0.37 0.27 16 50 H 0.08 0.88 7.88 -51.93 -0.41 0.48 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -29.57 395.86 -12.87 -42.43 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.42 Total: 8.74 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -4.30 Total: -13.31 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.01 Total: -42.66 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -2.15 Total: -5.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.57 -12.87 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123440499.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.746 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds