Wall clock time and date at job start Tue Mar 31 2020 06:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46614 * 2 1 4 4 C 1.50697 * 109.47230 * 119.99743 * 2 1 3 5 5 H 1.07997 * 120.00124 * 120.00217 * 4 2 1 6 6 C 1.37888 * 119.99885 * 300.00182 * 4 2 1 7 7 N 1.31507 * 120.00004 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99477 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47211 * 60.00176 * 8 6 4 10 10 H 1.48510 * 109.46756 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47197 * 299.99608 * 8 6 4 12 12 S 1.81397 * 109.46959 * 239.99798 * 2 1 3 13 13 C 1.76202 * 102.99899 * 68.54276 * 12 2 1 14 14 C 1.38774 * 120.10513 * 5.31015 * 13 12 2 15 15 C 1.38203 * 119.98896 * 180.02562 * 14 13 12 16 16 C 1.38287 * 120.19851 * 0.02562 * 15 14 13 17 17 C 1.38270 * 120.20302 * 359.72065 * 16 15 14 18 18 C 1.38632 * 120.00958 * 0.55373 * 17 16 15 19 19 N 1.40183 * 120.09824 * 179.72077 * 18 17 16 20 20 C 1.34781 * 119.99990 * 29.57381 * 19 18 17 21 21 O 1.21595 * 119.99824 * 356.23796 * 20 19 18 22 22 N 1.34782 * 119.99921 * 176.23310 * 20 19 18 23 23 C 1.48328 * 128.19918 * 0.02974 * 22 20 19 24 24 C 1.56832 * 104.34592 * 137.67733 * 23 22 20 25 25 H 1.08994 * 112.79620 * 264.53820 * 24 23 22 26 26 C 1.54289 * 108.95069 * 138.50888 * 24 23 22 27 27 C 1.55173 * 104.07435 * 224.28139 * 26 24 23 28 28 C 1.55034 * 102.04123 * 39.96904 * 27 26 24 29 29 C 1.54280 * 104.10695 * 320.02148 * 28 27 26 30 30 H 1.09002 * 111.97591 * 262.28320 * 29 28 27 31 31 C 1.48339 * 128.19650 * 180.02562 * 22 20 19 32 32 H 1.09006 * 109.47158 * 306.65241 * 1 2 3 33 33 H 1.08991 * 109.46883 * 66.65117 * 1 2 3 34 34 H 1.08998 * 109.46889 * 186.65708 * 1 2 3 35 35 H 0.97000 * 119.99842 * 179.97438 * 7 6 4 36 36 H 1.08003 * 120.00663 * 0.04403 * 14 13 12 37 37 H 1.08007 * 119.90082 * 180.02562 * 15 14 13 38 38 H 1.08000 * 119.89826 * 179.97438 * 16 15 14 39 39 H 1.08003 * 119.99062 * 180.27856 * 17 16 15 40 40 H 0.96997 * 120.00377 * 209.57378 * 19 18 17 41 41 H 1.09009 * 110.45887 * 256.87381 * 23 22 20 42 42 H 1.08997 * 110.46182 * 19.44776 * 23 22 20 43 43 H 1.09000 * 110.52353 * 342.81112 * 26 24 23 44 44 H 1.08994 * 110.52563 * 105.56230 * 26 24 23 45 45 H 1.08997 * 110.84180 * 281.82815 * 27 26 24 46 46 H 1.09003 * 111.02644 * 158.19051 * 27 26 24 47 47 H 1.09003 * 110.53011 * 201.32792 * 28 27 26 48 48 H 1.09003 * 110.52576 * 78.71668 * 28 27 26 49 49 H 1.08994 * 110.46001 * 103.12102 * 31 22 20 50 50 H 1.09000 * 110.56491 * 340.59643 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3226 -1.1194 4.0080 9 1 3.8076 -1.1187 4.0077 10 1 1.8280 -0.4190 5.2205 11 1 1.8282 -2.5196 4.0082 12 16 2.1347 -0.8552 -1.4811 13 6 1.6746 0.2371 -2.7850 14 6 1.1094 1.4704 -2.4930 15 6 0.7490 2.3250 -3.5176 16 6 0.9493 1.9550 -4.8349 17 6 1.5166 0.7303 -5.1349 18 6 1.8761 -0.1360 -4.1140 19 7 2.4460 -1.3806 -4.4161 20 6 3.1800 -1.5316 -5.5365 21 8 3.2912 -0.6079 -6.3195 22 7 3.7908 -2.7063 -5.7888 23 6 3.7779 -3.9417 -4.9680 24 6 3.5992 -5.0993 -6.0109 25 1 2.5595 -5.4041 -6.1294 26 6 4.5245 -6.2712 -5.6222 27 6 5.1668 -6.7065 -6.9659 28 6 5.4343 -5.3429 -7.6533 29 6 4.1851 -4.5016 -7.3187 30 1 3.4599 -4.5069 -8.1325 31 6 4.6349 -3.0697 -6.9531 32 1 -0.3634 0.6135 0.8245 33 1 -0.3633 0.4073 -0.9434 34 1 -0.3633 -1.0207 0.1191 35 1 0.7089 1.1615 3.4844 36 1 0.9515 1.7625 -1.4653 37 1 0.3096 3.2848 -3.2888 38 1 0.6655 2.6265 -5.6318 39 1 1.6756 0.4467 -6.1648 40 1 2.3122 -2.1332 -3.8190 41 1 4.7177 -4.0489 -4.4261 42 1 2.9367 -3.9300 -4.2750 43 1 5.2924 -5.9366 -4.9246 44 1 3.9458 -7.0885 -5.1919 45 1 4.4712 -7.3075 -7.5516 46 1 6.0986 -7.2465 -6.7972 47 1 5.5314 -5.4708 -8.7314 48 1 6.3301 -4.8770 -7.2425 49 1 5.6893 -3.0601 -6.6771 50 1 4.4534 -2.3891 -7.7850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123440499.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:14 Heat of formation + Delta-G solvation = -14.776809 kcal Electronic energy + Delta-G solvation = -29723.728807 eV Core-core repulsion = 25841.049325 eV Total energy + Delta-G solvation = -3882.679482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.90458 -40.49412 -39.20839 -36.28037 -35.88936 -35.65067 -32.83972 -31.61617 -31.48175 -30.95861 -29.48620 -27.38258 -26.58408 -25.27619 -24.02064 -23.66060 -22.93282 -21.79472 -20.91934 -20.11745 -19.65106 -18.83164 -18.11866 -17.89046 -17.16246 -16.98305 -16.86895 -16.33295 -16.04269 -15.71700 -15.46651 -15.35417 -15.05388 -14.91337 -14.40777 -14.37543 -14.19685 -13.91687 -13.70248 -13.43131 -13.28528 -13.05338 -13.00313 -12.85884 -12.77953 -12.45352 -12.26048 -12.12327 -11.93810 -11.86658 -11.74407 -11.58421 -11.55798 -11.50173 -11.44627 -11.35675 -11.02389 -10.82563 -10.59143 -10.47081 -9.94793 -9.24710 -8.25177 -8.15646 -6.41075 0.25060 0.38319 0.81633 1.36298 1.42546 1.43406 1.51743 1.85343 1.92797 2.37943 2.74421 2.81119 3.05443 3.36421 3.48277 3.76564 3.91900 4.12893 4.16468 4.24275 4.30368 4.33456 4.39488 4.47139 4.49368 4.53719 4.56560 4.60717 4.63737 4.80792 4.80919 4.84624 4.86982 4.88883 4.92047 4.96070 5.05758 5.16929 5.23182 5.27573 5.30113 5.33933 5.36502 5.45380 5.48452 5.53640 5.57120 5.59439 5.73579 5.87869 5.99781 6.04503 6.60870 6.71063 7.26315 7.29219 8.81121 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009879 B = 0.002786 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.668773 B =10049.310196 C =12542.696614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.099 3.901 3 H 0.024 0.976 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.028 3.972 7 N -0.909 5.909 8 Si 0.967 3.033 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.268 1.268 12 S -0.171 6.171 13 C -0.115 4.115 14 C -0.129 4.129 15 C -0.118 4.118 16 C -0.107 4.107 17 C -0.124 4.124 18 C 0.162 3.838 19 N -0.671 5.671 20 C 0.724 3.276 21 O -0.608 6.608 22 N -0.641 5.641 23 C 0.095 3.905 24 C -0.095 4.095 25 H 0.093 0.907 26 C -0.117 4.117 27 C -0.120 4.120 28 C -0.115 4.115 29 C -0.100 4.100 30 H 0.088 0.912 31 C 0.125 3.875 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.269 0.731 36 H 0.120 0.880 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.144 0.856 40 H 0.412 0.588 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.885 -12.000 -19.593 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.029 4.029 3 H 0.042 0.958 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.174 4.174 7 N -0.546 5.546 8 Si 0.791 3.209 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.193 1.193 12 S 0.075 5.925 13 C -0.230 4.230 14 C -0.153 4.153 15 C -0.138 4.138 16 C -0.128 4.128 17 C -0.146 4.146 18 C 0.060 3.940 19 N -0.318 5.318 20 C 0.427 3.573 21 O -0.488 6.488 22 N -0.377 5.377 23 C -0.027 4.027 24 C -0.114 4.114 25 H 0.111 0.889 26 C -0.154 4.154 27 C -0.158 4.158 28 C -0.153 4.153 29 C -0.119 4.119 30 H 0.107 0.893 31 C 0.003 3.997 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.138 0.862 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.162 0.838 40 H 0.250 0.750 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.101 0.899 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.493 -12.290 -19.954 24.070 hybrid contribution -0.563 0.842 1.569 1.868 sum 4.930 -11.448 -18.384 22.211 Atomic orbital electron populations 1.21918 0.95641 1.00709 1.00087 1.20825 0.96033 0.96020 0.89990 0.95838 1.20848 1.33148 1.13430 0.89976 0.92194 1.25667 0.94655 0.95540 1.01526 1.69973 1.36348 1.23363 1.24937 0.85468 0.78785 0.78780 0.77846 1.19641 1.20377 1.19262 1.84713 1.74772 1.32572 1.00483 1.21717 1.07048 0.99253 0.95026 1.21288 1.00371 0.93084 1.00550 1.21327 1.00271 1.00047 0.92163 1.21360 0.98422 0.96049 0.96977 1.21451 0.99043 0.95000 0.99124 1.17144 0.98859 0.86900 0.91084 1.42536 1.52662 1.11715 1.24915 1.15397 0.78274 0.82255 0.81380 1.90832 1.68210 1.40408 1.49381 1.48247 1.52101 1.10704 1.26627 1.23350 1.02714 0.82604 0.94056 1.23242 1.00671 0.94062 0.93418 0.88891 1.22517 0.98151 0.96676 0.98094 1.22597 1.01043 0.96593 0.95546 1.22515 0.96113 0.95310 1.01346 1.22860 0.98543 0.92877 0.97619 0.89320 1.22691 0.93905 0.95981 0.87144 0.91158 0.94405 0.94541 0.92204 0.86206 0.83246 0.82540 0.83834 0.75029 0.89426 0.91009 0.90882 0.90645 0.90934 0.90487 0.90514 0.90859 0.89904 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.33 71.98 0.60 -5.29 16 2 C 0.10 4.97 1.98 29.85 0.06 5.03 16 3 H 0.02 1.29 6.97 -2.39 -0.02 1.28 16 4 C -0.53 -28.88 8.58 25.60 0.22 -28.66 16 5 H 0.06 3.23 7.71 -2.91 -0.02 3.21 16 6 C 0.03 1.50 5.30 84.66 0.45 1.95 16 7 N -0.91 -49.88 11.40 21.45 0.24 -49.64 16 8 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 12 S -0.17 -7.40 20.03 -56.49 -1.13 -8.53 16 13 C -0.11 -4.57 5.98 22.70 0.14 -4.43 16 14 C -0.13 -4.89 7.96 22.39 0.18 -4.71 16 15 C -0.12 -3.63 10.04 22.27 0.22 -3.40 16 16 C -0.11 -3.09 10.04 22.29 0.22 -2.87 16 17 C -0.12 -4.19 8.74 22.37 0.20 -3.99 16 18 C 0.16 5.91 6.40 38.20 0.24 6.15 16 19 N -0.67 -22.02 5.08 -316.66 -1.61 -23.63 16 20 C 0.72 23.24 8.45 179.05 1.51 24.76 16 21 O -0.61 -22.83 13.76 -4.01 -0.06 -22.88 16 22 N -0.64 -15.44 3.31 -819.76 -2.71 -18.16 16 23 C 0.10 1.72 6.55 87.37 0.57 2.29 16 24 C -0.09 -1.25 4.10 -8.23 -0.03 -1.28 16 25 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 26 C -0.12 -1.17 6.37 31.78 0.20 -0.97 16 27 C -0.12 -0.99 6.94 32.04 0.22 -0.77 16 28 C -0.12 -1.07 6.33 31.72 0.20 -0.87 16 29 C -0.10 -1.30 3.91 -9.08 -0.04 -1.34 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 31 C 0.12 2.33 6.58 86.53 0.57 2.90 16 32 H 0.07 3.61 6.28 -2.38 -0.01 3.60 16 33 H 0.04 1.62 5.89 -2.39 -0.01 1.61 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 36 H 0.12 4.97 4.92 -2.91 -0.01 4.95 16 37 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 38 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.14 4.92 5.83 -2.91 -0.02 4.91 16 40 H 0.41 12.57 6.20 -92.71 -0.57 11.99 16 41 H 0.09 1.46 7.29 -2.38 -0.02 1.44 16 42 H 0.07 1.34 6.80 -2.39 -0.02 1.32 16 43 H 0.07 0.75 7.24 -2.39 -0.02 0.73 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.07 0.68 7.20 -2.39 -0.02 0.66 16 49 H 0.08 1.37 7.21 -2.39 -0.02 1.36 16 50 H 0.07 1.49 7.88 -2.39 -0.02 1.47 16 Total: -1.00 -64.66 395.86 2.89 -61.77 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.39 Total: 32.58 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 5.74 Total: -15.50 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -4.08 Total: -91.42 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.06 Total: -22.88 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: -7.40 SS G_CDS: -1.13 Total: -8.53 kcal Total: -64.66 2.89 -61.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123440499.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.994 kcal (2) G-P(sol) polarization free energy of solvation -64.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds