Wall clock time and date at job start Tue Mar 31 2020 06:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47597 * 2 1 4 4 C 1.50700 * 109.47416 * 239.99593 * 2 1 3 5 5 H 1.07998 * 120.00083 * 240.00214 * 4 2 1 6 6 C 1.37873 * 119.99911 * 60.00192 * 4 2 1 7 7 N 1.31514 * 119.99797 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00099 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46992 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47308 * 120.00166 * 8 6 4 11 11 H 1.48506 * 109.46801 * 239.99666 * 8 6 4 12 12 S 1.81408 * 109.46883 * 119.99765 * 2 1 3 13 13 C 1.76205 * 102.99934 * 286.12771 * 12 2 1 14 14 C 1.38772 * 120.10359 * 0.12245 * 13 12 2 15 15 C 1.38205 * 119.98919 * 180.27277 * 14 13 12 16 16 C 1.38287 * 120.19502 * 359.72616 * 15 14 13 17 17 C 1.38265 * 120.20482 * 359.97438 * 16 15 14 18 18 C 1.38633 * 120.01196 * 0.02562 * 17 16 15 19 19 N 1.40187 * 120.09983 * 179.97438 * 18 17 16 20 20 C 1.34778 * 119.99733 * 33.75130 * 19 18 17 21 21 O 1.21592 * 120.00018 * 354.72258 * 20 19 18 22 22 N 1.34782 * 119.99815 * 174.72356 * 20 19 18 23 23 C 1.48333 * 128.19753 * 0.02715 * 22 20 19 24 24 C 1.56838 * 104.34611 * 137.67816 * 23 22 20 25 25 H 1.08997 * 112.79731 * 264.53964 * 24 23 22 26 26 C 1.54275 * 108.95361 * 138.50911 * 24 23 22 27 27 C 1.55171 * 104.07980 * 224.28376 * 26 24 23 28 28 C 1.55036 * 102.04130 * 39.96384 * 27 26 24 29 29 C 1.54285 * 104.10622 * 320.02785 * 28 27 26 30 30 H 1.08999 * 111.97209 * 262.27986 * 29 28 27 31 31 C 1.48328 * 128.19848 * 179.97438 * 22 20 19 32 32 H 1.09001 * 109.46661 * 64.12775 * 1 2 3 33 33 H 1.09002 * 109.47033 * 184.12474 * 1 2 3 34 34 H 1.09001 * 109.47256 * 304.12919 * 1 2 3 35 35 H 0.97004 * 119.99988 * 180.02562 * 7 6 4 36 36 H 1.08002 * 120.00726 * 359.97424 * 14 13 12 37 37 H 1.07999 * 119.90548 * 179.73969 * 15 14 13 38 38 H 1.08004 * 119.89972 * 180.02562 * 16 15 14 39 39 H 1.08007 * 119.99454 * 180.02562 * 17 16 15 40 40 H 0.97005 * 120.00264 * 213.74862 * 19 18 17 41 41 H 1.08996 * 110.45804 * 256.87178 * 23 22 20 42 42 H 1.09002 * 110.46337 * 19.45073 * 23 22 20 43 43 H 1.09004 * 110.52555 * 342.80867 * 26 24 23 44 44 H 1.08997 * 110.52958 * 105.55994 * 26 24 23 45 45 H 1.09002 * 110.84187 * 281.82910 * 27 26 24 46 46 H 1.08998 * 111.03592 * 158.18586 * 27 26 24 47 47 H 1.09000 * 110.53089 * 201.33028 * 28 27 26 48 48 H 1.09000 * 110.52705 * 78.72283 * 28 27 26 49 49 H 1.08994 * 110.46435 * 103.12319 * 31 22 20 50 50 H 1.09003 * 110.57217 * 340.59951 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 3.1466 -2.2871 -3.6035 10 1 1.1663 -1.5869 -4.8160 11 1 3.1468 -0.1875 -4.8164 12 16 2.1346 -0.8551 1.4812 13 6 1.8171 0.3070 2.7671 14 6 1.2287 1.5286 2.4716 15 6 0.9859 2.4406 3.4813 16 6 1.3224 2.1376 4.7879 17 6 1.9033 0.9204 5.0923 18 6 2.1507 -0.0007 4.0862 19 7 2.7401 -1.2352 4.3927 20 6 2.4718 -1.8366 5.5687 21 8 1.7963 -1.2659 6.4032 22 7 2.9524 -3.0706 5.8196 23 6 3.7877 -3.9257 4.9414 24 6 4.8638 -4.5377 5.9045 25 1 5.7963 -3.9734 5.9089 26 6 5.0674 -6.0248 5.5480 27 6 5.0921 -6.7427 6.9234 28 6 3.9786 -5.9934 7.6994 29 6 4.1627 -4.5174 7.2898 30 1 4.7339 -3.9570 8.0300 31 6 2.7720 -3.8946 7.0397 32 1 -0.3633 0.4485 -0.9247 33 1 -0.3633 -1.0250 0.0739 34 1 -0.3634 0.5766 0.8507 35 1 0.7083 1.1607 -3.4844 36 1 0.9650 1.7685 1.4522 37 1 0.5318 3.3926 3.2492 38 1 1.1301 2.8537 5.5732 39 1 2.1644 0.6872 6.1141 40 1 3.3410 -1.6567 3.7584 41 1 3.1830 -4.7101 4.4865 42 1 4.2732 -3.3237 4.1733 43 1 4.2370 -6.3901 4.9437 44 1 6.0132 -6.1665 5.0251 45 1 6.0589 -6.6148 7.4104 46 1 4.8484 -7.7998 6.8175 47 1 4.1157 -6.1118 8.7743 48 1 2.9947 -6.3536 7.3989 49 1 2.0309 -4.6748 6.8664 50 1 2.4768 -3.2705 7.8832 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123440723.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:20 Heat of formation + Delta-G solvation = -2.311471 kcal Electronic energy + Delta-G solvation = -29729.634688 eV Core-core repulsion = 25847.495744 eV Total energy + Delta-G solvation = -3882.138944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.79412 -39.51928 -37.98388 -34.94757 -34.66004 -34.09439 -31.07729 -30.82389 -30.01376 -29.89002 -28.47826 -25.92167 -25.39973 -24.32388 -22.62938 -22.20877 -21.32419 -21.14329 -19.76901 -19.44634 -18.43507 -17.47674 -16.66449 -16.37810 -16.10698 -15.94119 -15.29217 -15.13588 -14.94462 -14.53539 -14.31246 -14.07354 -13.70697 -13.63675 -13.36763 -13.23588 -12.77987 -12.65064 -12.49213 -12.30889 -11.95950 -11.73071 -11.56626 -11.43137 -11.29232 -11.12669 -11.09916 -11.07904 -11.04482 -10.95420 -10.87150 -10.61293 -10.51790 -10.24916 -10.06693 -9.77501 -9.45112 -9.09661 -8.96942 -8.90356 -8.53317 -7.92500 -6.54986 -6.25190 -4.34606 1.62298 1.78275 2.35213 2.57614 3.16796 3.18204 3.26445 3.30910 3.59268 3.84061 3.99187 4.16408 4.17696 4.26634 4.34832 4.79897 4.85835 4.92745 5.01369 5.04413 5.06973 5.12508 5.28047 5.35040 5.37132 5.39366 5.48262 5.51556 5.56814 5.63927 5.66848 5.74891 5.77200 5.85334 5.89058 5.96346 5.98962 6.09529 6.28530 6.53235 6.54755 6.63224 6.72670 6.79258 6.82408 6.93252 7.04115 7.28398 7.37778 7.57578 7.74490 7.89257 7.98885 8.53812 8.64564 9.29796 10.80690 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009837 B = 0.002804 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.822485 B = 9984.759337 C =12490.501409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.100 3.900 3 H 0.052 0.948 4 C -0.510 4.510 5 H 0.067 0.933 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.906 3.094 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.281 1.281 12 S -0.175 6.175 13 C -0.089 4.089 14 C -0.118 4.118 15 C -0.118 4.118 16 C -0.125 4.125 17 C -0.109 4.109 18 C 0.164 3.836 19 N -0.673 5.673 20 C 0.731 3.269 21 O -0.577 6.577 22 N -0.642 5.642 23 C 0.102 3.898 24 C -0.101 4.101 25 H 0.090 0.910 26 C -0.119 4.119 27 C -0.124 4.124 28 C -0.119 4.119 29 C -0.107 4.107 30 H 0.087 0.913 31 C 0.130 3.870 32 H 0.096 0.904 33 H 0.038 0.962 34 H 0.021 0.979 35 H 0.266 0.734 36 H 0.139 0.861 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.140 0.860 40 H 0.408 0.592 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.854 -9.757 18.033 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 H 0.070 0.930 4 C -0.550 4.550 5 H 0.085 0.915 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.733 3.267 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 S 0.072 5.928 13 C -0.205 4.205 14 C -0.143 4.143 15 C -0.139 4.139 16 C -0.147 4.147 17 C -0.131 4.131 18 C 0.063 3.937 19 N -0.320 5.320 20 C 0.434 3.566 21 O -0.454 6.454 22 N -0.379 5.379 23 C -0.021 4.021 24 C -0.120 4.120 25 H 0.109 0.891 26 C -0.157 4.157 27 C -0.162 4.162 28 C -0.157 4.157 29 C -0.126 4.126 30 H 0.105 0.895 31 C 0.007 3.993 32 H 0.115 0.885 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.157 0.843 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.157 0.843 40 H 0.245 0.755 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.736 -10.335 18.427 22.176 hybrid contribution -0.020 0.668 -1.333 1.492 sum 6.717 -9.667 17.094 20.755 Atomic orbital electron populations 1.22138 0.96268 1.00128 1.01817 1.21093 0.95667 0.97354 0.88634 0.93010 1.20680 1.32447 1.13220 0.88612 0.91469 1.24894 0.94667 0.94959 0.98880 1.69866 1.35814 1.22542 1.24062 0.86303 0.78717 0.79628 0.82058 1.19492 1.20704 1.20707 1.85012 1.78213 1.27208 1.02362 1.21776 1.03200 0.99593 0.95918 1.21323 0.99658 0.92624 1.00649 1.21025 1.00860 0.99227 0.92772 1.20931 1.00821 0.96581 0.96318 1.21159 1.00520 0.92164 0.99286 1.16947 0.99855 0.85049 0.91857 1.42525 1.49356 1.21080 1.19075 1.15232 0.79565 0.79492 0.82311 1.90895 1.43772 1.64126 1.46627 1.48113 1.55439 1.14600 1.19764 1.23102 0.91787 0.94184 0.93068 1.23249 0.97946 0.96610 0.94243 0.89121 1.22517 1.02290 0.93461 0.97386 1.22604 0.98835 0.99118 0.95616 1.22528 0.99398 0.93644 1.00115 1.22879 0.95988 0.96586 0.97152 0.89478 1.22436 0.96141 0.93374 0.87363 0.88538 0.94255 0.96033 0.92436 0.84332 0.86213 0.86247 0.84280 0.75510 0.90211 0.90697 0.90880 0.91286 0.91420 0.91371 0.91480 0.91011 0.90959 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.64 37.16 0.32 -3.07 16 2 C 0.10 2.42 1.97 -27.88 -0.05 2.37 16 3 H 0.05 1.34 6.88 -51.92 -0.36 0.98 16 4 C -0.51 -13.42 8.58 -34.44 -0.30 -13.72 16 5 H 0.07 1.78 7.71 -52.49 -0.40 1.37 16 6 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 7 N -0.89 -23.82 11.29 55.43 0.63 -23.19 16 8 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 S -0.18 -3.70 20.06 -107.50 -2.16 -5.86 16 13 C -0.09 -1.75 6.11 -38.91 -0.24 -1.99 16 14 C -0.12 -2.24 8.27 -39.40 -0.33 -2.57 16 15 C -0.12 -1.93 10.04 -39.58 -0.40 -2.32 16 16 C -0.12 -1.95 10.04 -39.55 -0.40 -2.34 16 17 C -0.11 -1.89 8.71 -39.43 -0.34 -2.23 16 18 C 0.16 3.00 6.34 -83.42 -0.53 2.47 16 19 N -0.67 -10.96 5.02 -14.06 -0.07 -11.03 16 20 C 0.73 11.75 8.44 -86.91 -0.73 11.01 16 21 O -0.58 -10.86 13.97 5.29 0.07 -10.79 16 22 N -0.64 -7.89 3.31 -173.12 -0.57 -8.47 16 23 C 0.10 0.97 6.55 -0.96 -0.01 0.96 16 24 C -0.10 -0.75 4.09 -86.67 -0.35 -1.10 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 C -0.12 -0.73 6.37 -24.91 -0.16 -0.89 16 27 C -0.12 -0.68 6.94 -24.51 -0.17 -0.85 16 28 C -0.12 -0.70 6.33 -24.98 -0.16 -0.85 16 29 C -0.11 -0.79 3.90 -87.99 -0.34 -1.13 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 C 0.13 1.27 6.58 -2.29 -0.02 1.26 16 32 H 0.10 2.46 5.97 -51.93 -0.31 2.15 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.02 0.46 6.05 -51.93 -0.31 0.14 16 35 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.14 2.79 4.64 -52.49 -0.24 2.55 16 37 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.14 2.42 6.10 -52.48 -0.32 2.10 16 40 H 0.41 6.11 6.32 -40.82 -0.26 5.85 16 41 H 0.08 0.72 7.29 -51.93 -0.38 0.34 16 42 H 0.07 0.71 6.79 -51.93 -0.35 0.36 16 43 H 0.07 0.46 7.24 -51.93 -0.38 0.08 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.42 7.20 -51.93 -0.37 0.05 16 49 H 0.07 0.65 7.20 -51.93 -0.37 0.27 16 50 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -29.63 396.43 -12.85 -42.49 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -7.41 Total: 8.81 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -4.29 Total: -13.26 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.02 Total: -42.68 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.79 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -2.16 Total: -5.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.63 -12.85 -42.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123440723.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.177 kcal (2) G-P(sol) polarization free energy of solvation -29.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds